/** @cond doxygenLibsbmlInternal */
void CompModelPlugin::renameIDs(List* allElements, const string& prefix)
{
if (prefix=="") return; //Nothing to prepend.
vector<pair<string, string> > renamedSIds;
vector<pair<string, string> > renamedUnitSIds;
vector<pair<string, string> > renamedMetaIds;
//PrefixTransformer trans(prefix);
for (unsigned long el=0; el < allElements->getSize(); ++el)
{
SBase* element = static_cast<SBase*>(allElements->get(el));
string id = element->getId();
string metaid = element->getMetaId();
//element->transformIdentifiers(&trans);
element->prependStringToAllIdentifiers(prefix);
if (element->getTypeCode() == SBML_LOCAL_PARAMETER) {
element->setId(id); //Change it back. This would perhaps be better served by overriding 'prependStringToAllIdentifiers' but hey.
}
string newid = element->getId();
string newmetaid = element->getMetaId();
if (id != newid) {
int type = element->getTypeCode();
if (type==SBML_UNIT_DEFINITION) {
renamedUnitSIds.push_back(make_pair(id, newid));
}
else if (type==SBML_COMP_PORT) {
//Do nothing--these can only be referenced from outside the Model, so they need to be handled specially.
// (In the default case, we throw them away).
}
else {
//This is a little dangerous, but hey! What's a little danger between friends!
//(What we are assuming is that any attribute you can get with 'getId' is of the type 'SId')
renamedSIds.push_back(make_pair(id, newid));
}
}
if (metaid != newmetaid) {
renamedMetaIds.push_back(make_pair(metaid, newmetaid));
}
}
for (unsigned long el=0; el<allElements->getSize(); el++) {
SBase* element = static_cast<SBase*>(allElements->get(el));
for (size_t id=0; id<renamedSIds.size(); id++)
{
element->renameSIdRefs(renamedSIds[id].first, renamedSIds[id].second);
}
for (size_t uid=0; uid<renamedUnitSIds.size(); uid++)
{
element->renameUnitSIdRefs(renamedUnitSIds[uid].first, renamedUnitSIds[uid].second);
}
for (size_t mid=0; mid<renamedMetaIds.size(); mid++)
{
element->renameMetaIdRefs(renamedMetaIds[mid].first, renamedMetaIds[mid].second);
}
}
}
