void FastaWriter::WriteSequence(const Sequence& seq, const std::string& id, const std::string& comment)
{
assert(m_fileHandle != NULL);
int n = fprintf(m_fileHandle, ">%s %s\n%s\n", id.c_str(), comment.c_str(), seq.c_str());
if (n < 0)
die(m_path);
}
void FastaWriter::WriteSequence(const Sequence& seq, unsigned id,
unsigned multiplicity, const string& comment)
{
assert(m_fileHandle != NULL);
const char *sep = comment.empty() ? "" : " ";
int n = opt::rank < 0
? fprintf(m_fileHandle, ">%llu %zu %u%s%s\n%s\n",
(long long unsigned)id,
seq.length(), multiplicity,
sep, comment.c_str(),
seq.c_str())
: fprintf(m_fileHandle, ">%u:%llu %zu %u%s%s\n%s\n",
opt::rank,
(long long unsigned)id,
seq.length(), multiplicity,
sep, comment.c_str(),
seq.c_str());
if (n < 0)
die(m_path);
}
