void CSeqBasicCommand::Execute( CCgiContext& ctx )
{
const CNcbiRegistry& reg = ctx.GetConfig();
/* load in the html template file */
string baseFile = reg.Get( "filesystem", "HtmlBaseFile" );
auto_ptr<CHTMLPage> page( new CHTMLPage( NcbiEmptyString, baseFile ) );
/* set up to replace <@VIEW@> in template file with html returned
from CreateView */
page->AddTagMap( "QUICKSEARCH", CreateQuickSearch(ctx) );
page->AddTagMap( "VIEW", CreateView( ctx ) );
/* actual page output */
ctx.GetResponse().WriteHeader();
page->Print(ctx.GetResponse().out(), CNCBINode::eHTML );
}
void CHelloCommand::Execute( CCgiContext& ctx )
{
const CNcbiRegistry& reg = ctx.GetConfig();
// load in the html template file
string baseFile = reg.Get( "filesystem", "HtmlBaseFile" );
auto_ptr<CHTMLPage> page( new CHTMLPage( NcbiEmptyString, baseFile ) );
// set up to replace <@VIEW@> in template file with html returned
// from CreateView
page->AddTagMap( "VIEW", CreateView( ctx ) );
// actual page output
ctx.GetResponse().WriteHeader();
page->Print(ctx.GetResponse().out(), CNCBINode::eHTML );
}
/* carries out the construction of the webpage when the
* cmd=advanced is set in the query string. */
void CSeqAdvancedGOCommand::Execute( CCgiContext& ctx )
{
const CNcbiRegistry& reg = ctx.GetConfig();
/* load in the html template file */
string baseFile = reg.Get( "filesystem", "HtmlBaseFile" );
auto_ptr<CHTMLPage> page( new CHTMLPage( NcbiEmptyString, baseFile ) );
page->AddTagMap("QUICKSEARCH", CreateSpacer( ctx ));
/* calls parent (CSeqBasicCommand) CreateViewi,
* to add the "Advanced Search" table: allows
* user to enter parameters for search. */
page->AddTagMap( "VIEW", CreateView( ctx ) );
/* actual page output */
ctx.GetResponse().WriteHeader();
page->Print(ctx.GetResponse().out(), CNCBINode::eHTML );
}
void CBlastHitMatrixCGIApplication::x_GetSeqAnnot(CCgiContext& ctx)
{
const CNcbiRegistry & reg = ctx.GetConfig();
string blastURL = reg.Get("NetParams", "BlastURL");
string url = (string)blastURL + "?CMD=Get&RID=" + m_RID + "&FORMAT_TYPE=ASN.1&FORMAT_OBJECT=Alignment";
SConnNetInfo* net_info = ConnNetInfo_Create(NULL);
// create HTTP connection
CConn_HttpStream inHttp(url,net_info);
try {
m_Annot.Reset(new CSeq_annot);
auto_ptr<CObjectIStream> is
(CObjectIStream::Open(eSerial_AsnText, inHttp));
*is >> *m_Annot;
}
catch (CException& e) {
m_Annot.Reset();
NCBI_THROW(CBlastHitMatrixCGIException, eInvalidSeqAnnot, "Exception reading SeqAnnot via url " + url + ", exception message: " + e.GetMsg());
}
}
