Esempio n. 1
0
template<class T> static bool load_nc_array(const NcFile& ncf, const string& name, vector<T>& dest, bool required = true, int offset = 0, int count = -1)
{
	NcVar *v = load_nc_variable(ncf, name.c_str(), required);
	if (v)
	{
		vector<long> offsets = list_of(offset).repeat(v->num_dims()-1, 0);
		v->set_cur(&offsets.front());
		vector<long> counts (v->num_dims());
		long* shape = v->edges();
		transform(shape, shape + v->num_dims(), offsets.begin(), counts.begin(), minus<long>());
		delete shape;
		if (count > 0)
		{
			counts[0] = count;
		}
		dest.resize(product(counts));
		bool success = v->get(&dest.front(), &counts.front());
		if (!success)
		{
			dest.resize(0);
			check(!required, string("NetcdfDataset::load_nc_array<") + typeid(T).name() + "> " + name + '\n' + "failed with offset " + str(offsets) + ", counts " + str(counts));
		}
		return success;
	}
	return false;
}
Esempio n. 2
0
bool ReadAstro::open(const char *path)
{
    assert(!m_ncfile);
    m_ncfile = new NcFile(path, NcFile::ReadOnly);
    if (!m_ncfile->is_valid())
    {
        close();
        sendError("failed to open NetCDF file %s", path);
        return false;
    }

    if (m_ncfile->get_format() == NcFile::BadFormat)
    {
        close();
        sendError("bad NetCDF file");
        return false;
    }

    fprintf(stderr, "dims=%d, vars=%d, attrs=%d\n",
            m_ncfile->num_dims(), m_ncfile->num_vars(), m_ncfile->num_atts());

    for (int i = 0; i < m_ncfile->num_dims(); ++i)
    {
        fprintf(stderr, "%s: %ld\n",
                m_ncfile->get_dim(i)->name(),
                m_ncfile->get_dim(i)->size());
    }

    for (int i = 0; i < m_ncfile->num_vars(); ++i)
    {
        fprintf(stderr, "%s: dims=%d atts=%d vals=%ld type=%d\n",
                m_ncfile->get_var(i)->name(),
                m_ncfile->get_var(i)->num_dims(),
                m_ncfile->get_var(i)->num_atts(),
                m_ncfile->get_var(i)->num_vals(),
                m_ncfile->get_var(i)->type());
        //int dims = m_ncfile->get_var(i)->num_dims();
        NcVar *var = m_ncfile->get_var(i);
        for (int j = 0; j < var->num_dims(); ++j)
        {
            fprintf(stderr, "   %s: %ld edge=%ld\n",
                    var->get_dim(j)->name(),
                    var->get_dim(j)->size(),
                    var->edges()[j]);
        }
    }

    for (int i = 0; i < m_ncfile->num_atts(); ++i)
    {
        fprintf(stderr, "%s\n", m_ncfile->get_att(i)->name());
    }

    return true;
}
Esempio n. 3
0
static string get_nc_string(const NcFile& ncf, const string& name, int offset = 0, bool required = true)
{
	static array<long, 2> offsets = {{0, 0}};
	static array<long, 2> counts = {{1, 0}};
	NcVar *v = load_nc_variable(ncf, name.c_str(), required);
	if (v)
	{
		long* shape = v->edges();
		offsets.front() = offset;
		counts.back() = shape[1];
		v->set_cur(&offsets.front());
		char* temp = new char [shape[1]];
		delete shape;
		bool success = v->get(temp, &counts.front());
		if(!success)
		{
			check(!required, " index " + str(offset) + " out of bounds for " + name + " in netcdf file");
		}
		string s(temp);
		delete [] temp;
		return s;
	}
	return "";
}
Esempio n. 4
0
RadarData_t ReadRadarFile(const string &filename,
                          const float latmin, const float latmax,
                          const float lonmin, const float lonmax)
{
    RadarData_t inputData;

    // Sets the internal netcdf error handling to nonfatal for this scope
    NcError error_handler(NcError::verbose_nonfatal);

    NcFile radarFile(filename.c_str());

    if (!radarFile.is_valid())
    {
        cerr << "ERROR: Could not open radar file: " << filename << " for reading.\n";

        // Error is indicated by the lack of initialization of
        // the filename member of the struct.
        return(inputData);
    }

    NcVar* latVar = radarFile.get_var("lat");

    if (NULL == latVar)
    {
        cerr << "ERROR: invalid data file.  No variable called 'lat'!\n";
        radarFile.close();
        return(inputData);
    }

    long latCnt = latVar->num_vals();
    double* latVals = new double[latCnt];
    latVar->get(latVals, latCnt);
    inputData.latUnits = GrabAttribute(latVar, 0);
    inputData.latSpacing = strtod(GrabAttribute(latVar, 1).c_str(), NULL);

    const long minLatIndex = lower_bound(latVals, latmin, latCnt);
    const long maxLatIndex = upper_bound(latVals, latmax, latCnt);

    delete latVals;
    latCnt = (maxLatIndex - minLatIndex) + 1;
    latVar->set_cur(minLatIndex);
    inputData.latVals = new double[latCnt];
    latVar->get(inputData.latVals, latCnt);


    NcVar* lonVar = radarFile.get_var("lon");

    if (NULL == lonVar)
    {
        cerr << "ERROR: invalid data file.  No variable called 'lon'!\n";
        radarFile.close();
        return(inputData);
    }

    long lonCnt = lonVar->num_vals();
    double* lonVals = new double[lonCnt];
    lonVar->get(lonVals, lonCnt);
    inputData.lonUnits = GrabAttribute(lonVar, 0);
    inputData.lonSpacing = strtod(GrabAttribute(lonVar, 1).c_str(), NULL);

    const long minLonIndex = lower_bound(lonVals, lonmin, lonCnt);
    const long maxLonIndex = upper_bound(lonVals, lonmax, lonCnt);

    delete lonVals;
    lonCnt = (maxLonIndex - minLonIndex) + 1;
    lonVar->set_cur(minLonIndex);
    inputData.lonVals = new double[lonCnt];
    lonVar->get(inputData.lonVals, lonCnt);

    NcVar* reflectVar = NULL;
    reflectVar = radarFile.get_var("value");

    if ( reflectVar == NULL )
    {
        // Try this variable name
        reflectVar = radarFile.get_var("Reflectivity");
    }

    if (reflectVar == NULL)
    {
        cerr << "ERROR: invalid data file.  No variable called 'value'!\n";
        radarFile.close();
        return(inputData);
    }


    inputData.dataEdges = reflectVar->edges();	// [0] - time, [1] - lat, [2] - lon
    inputData.dataEdges[1] = latCnt;
    inputData.dataEdges[2] = lonCnt;
    inputData.dataVals = new double[inputData.dataEdges[0] * inputData.dataEdges[1] * inputData.dataEdges[2]];
    reflectVar->set_cur(0, minLatIndex, minLonIndex);
    reflectVar->get(inputData.dataVals, inputData.dataEdges);

    inputData.var_LongName = GrabAttribute(reflectVar, 0);
    inputData.var_Units = "dBZ";//GrabAttribute(reflectVar, 1);


    NcVar* timeVar = radarFile.get_var("time");

    if (NULL == timeVar)
    {
        cerr << "ERROR: invalid data file.  No variable called 'time'!\n";
        radarFile.close();
        return(inputData);
    }

    inputData.scanTime = timeVar->as_long(0);
    inputData.timeUnits = GrabAttribute(timeVar, 0);

    NcAtt* titleAttrib = radarFile.get_att("title");

    inputData.fileTitle = (NULL == titleAttrib ? "" : titleAttrib->as_string(0));

    delete titleAttrib;

    radarFile.close();

    // Success!
    inputData.inputFilename = filename;


    return(inputData);
}