inline unsigned getLaneNumber(const flowcell::TileMetadataList& tiles)
{
ISAAC_ASSERT_MSG(
tiles.end()
== std::find_if(
tiles.begin(),
tiles.end(),
boost::bind(&flowcell::TileMetadata::getLane, _1)
!= tiles.front().getLane()),
"Expected all tiles to belong to the same lane");
return tiles.front().getLane();
}
void ParallelSeedLoader<ReaderT, KmerT>::loadSeeds(
const flowcell::TileMetadataList &tiles,
const matchFinder::TileClusterInfo &tileClusterBarcode,
std::vector<Seed<KmerT> > &seeds,
common::ScopedMallocBlock &mallocBlock)
{
// Start and execute the threads
ISAAC_THREAD_CERR << "Loading data on " << inputLoadersMax_ << " threads" << std::endl;
std::vector<flowcell::TileMetadata>::const_iterator nextTile = tiles.begin();
BaseT::reset(tiles, seeds, tileClusterBarcode);
threads_.execute(boost::bind(&ParallelSeedLoader::load, this,
boost::ref(tileClusterBarcode),
boost::ref(nextTile),
tiles.end(), _1),
inputLoadersMax_);
BaseT::sortSeeds(seeds, mallocBlock, threads_, coresMax_);
}
