inline unsigned getLaneNumber(const flowcell::TileMetadataList& tiles)
{
ISAAC_ASSERT_MSG(
tiles.end()
== std::find_if(
tiles.begin(),
tiles.end(),
boost::bind(&flowcell::TileMetadata::getLane, _1)
!= tiles.front().getLane()),
"Expected all tiles to belong to the same lane");
return tiles.front().getLane();
}
const std::vector<std::vector<unsigned > > SeedMemoryManager<KmerT>::getNotFoundMatchesCount(
const flowcell::TileMetadataList &unprocessedTiles,
const flowcell::BarcodeMetadataList &barcodeMetadataList,
const ReadMetadataList &readMetadataList,
const matchFinder::TileClusterInfo &foundMatches) const
{
ISAAC_ASSERT_MSG(unprocessedTiles.front().getIndex() <= unprocessedTiles.back().getIndex(),
"Expected tiles ordered by index");
std::vector<std::vector<unsigned > > ret(readMetadataList.size(), std::vector<unsigned>(
unprocessedTiles.back().getIndex() + 1));
BOOST_FOREACH(const flowcell::ReadMetadata &readMetadata, readMetadataList_)
{
const unsigned readIndex = readMetadata.getIndex();
BOOST_FOREACH(const flowcell::TileMetadata &tileMetadata, unprocessedTiles)
{
const unsigned tileIndex = tileMetadata.getIndex();
const std::vector<matchFinder::ClusterInfo> &oneTileInfo = foundMatches.at(tileIndex);
// match only clusters where no matches were found so far
ISAAC_ASSERT_MSG(oneTileInfo.size() == tileMetadata.getClusterCount(), "allTiles and foundMatches geometries must match");
ret.at(readIndex).at(tileIndex) =
std::count_if(oneTileInfo.begin(), oneTileInfo.end(),
boost::bind(&willLoadSeeds,
boost::ref(barcodeMetadataList), _1, readIndex));
}
}
return ret;
}