void _hh_reg_() {
int _vectorized = 1;
_initlists();
ion_reg("na", -10000.);
ion_reg("k", -10000.);
_na_sym = hoc_lookup("na_ion");
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 2);
_extcall_thread = (Datum*)ecalloc(1, sizeof(Datum));
_thread_mem_init(_extcall_thread);
_thread1data_inuse = 0;
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 1, _thread_mem_init);
_nrn_thread_reg(_mechtype, 0, _thread_cleanup);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
_nrn_thread_table_reg(_mechtype, _check_table_thread);
hoc_register_prop_size(_mechtype, 19, 7);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 hh /home/hines/neuron/nrnmpi/src/nrnoc/../../../nrn/src/nrnoc/hh.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _is_reg() {
int _vectorized = 1;
_initlists();
ion_reg("ca", -10000.);
ion_reg("cs", 2.0);
ion_reg("ns", 2.0);
_ca_sym = hoc_lookup("ca_ion");
_cs_sym = hoc_lookup("cs_ion");
_ns_sym = hoc_lookup("ns_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 6);
_extcall_thread = (Datum*)ecalloc(5, sizeof(Datum));
_thread_mem_init(_extcall_thread);
_thread1data_inuse = 0;
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 1, _thread_mem_init);
_nrn_thread_reg(_mechtype, 0, _thread_cleanup);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 12, 8);
hoc_register_dparam_semantics(_mechtype, 0, "ca_ion");
hoc_register_dparam_semantics(_mechtype, 1, "ca_ion");
hoc_register_dparam_semantics(_mechtype, 2, "ca_ion");
hoc_register_dparam_semantics(_mechtype, 3, "cs_ion");
hoc_register_dparam_semantics(_mechtype, 4, "cs_ion");
hoc_register_dparam_semantics(_mechtype, 5, "ns_ion");
hoc_register_dparam_semantics(_mechtype, 6, "ns_ion");
hoc_register_dparam_semantics(_mechtype, 7, "cvodeieq");
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 Is /home/ovcharen/dev/release/mod2c/test/validation/mod/is.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static void* scons(Object*) {
#if HAVE_IV
SymChooser* sc = nil;
IFGUI
const char* caption = "Choose a Variable Name or";
if (ifarg(1)) {
caption = gargstr(1);
}
Style* style = new Style(Session::instance()->style());
style->attribute("caption", caption);
if (ifarg(2)) {
Symbol* sym = hoc_lookup(gargstr(2));
int type = RANGEVAR;
if (sym) {
type = sym->type;
}
sc = new SymChooser(new SymDirectory(type), WidgetKit::instance(), style, nil, 1);
}else{
sc = new SymChooser(nil, WidgetKit::instance(), style);
}
Resource::ref(sc);
ENDGUI
return (void*)sc;
#else
return (void*)0;
#endif /* HAVE_IV */
}
void _hh2_reg() {
int _vectorized = 0;
_initlists();
ion_reg("na", -10000.);
ion_reg("k", -10000.);
_na_sym = hoc_lookup("na_ion");
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_dparam_size(_mechtype, 6);
hoc_register_cvode(_mechtype, _ode_count, 0, 0, 0);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 hh2 /Users/jiemei/Desktop/combined_v2/trial/relay/x86_64/hh2.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
JNIEXPORT jdouble JNICALL Java_neuron_Neuron_hDoubleMethod__Ljava_lang_String_2I
(JNIEnv *env, jclass, jstring name, jint narg) {
jnisave
const char* cn = env->GetStringUTFChars(name, 0);
Symbol* sym = hoc_lookup(cn);
env->ReleaseStringUTFChars(name, cn);
jnirestore
return hoc_call_func(sym, narg);
}
void OcPointer_reg() {
class2oc("Pointer", cons, destruct, members, NULL, NULL, s_memb);
// now make the val variable an actual double
Symbol* sv = hoc_lookup("Pointer");
Symbol* sx = hoc_table_lookup("val", sv->u.ctemplate->symtable);
sx->type = VAR;
sx->arayinfo = NULL;
sv->u.ctemplate->steer = steer_val;
}
void _kca_reg() {
int _vectorized = 0;
_initlists();
ion_reg("k", -10000.);
ion_reg("ca", -10000.);
_k_sym = hoc_lookup("k_ion");
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 12, 5);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 kca /home/heberto/Downloads/Branco_2010/x86_64/kca.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _hhrx_reg() {
int _vectorized = 1;
_initlists();
ion_reg("na", -10000.);
ion_reg("k", -10000.);
_na_sym = hoc_lookup("na_ion");
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 29, 7);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 hhrx /home/mohit/IRBlock_Vanderbilt-master-2/compare/x86_64/hhrx.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _SK_E2_reg() {
int _vectorized = 1;
_initlists();
ion_reg("k", -10000.);
ion_reg("ca", -10000.);
_k_sym = hoc_lookup("k_ion");
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 10, 5);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 SK_E2 /Users/BaekJeongHun/GitHub/OD_GIF/L5bPCmodelsEH/x86_64/SK_E2.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _K_ahp_debug_Bh_reg() {
int _vectorized = 1;
_initlists();
ion_reg("k", -10000.);
ion_reg("ca", -10000.);
_k_sym = hoc_lookup("k_ion");
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_dparam_size(_mechtype, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 k_ahp_Bh /Users/maoss2/NEURON/CA1_cell_test/Stimulation_case_per_case/CA1_Electrophysiologic_Models/CA1_Electrophysiologic_Models/Mod_Files/x86_64/K_ahp_debug_Bh.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _IAHP_reg() {
int _vectorized = 1;
_initlists();
ion_reg("k", -10000.);
ion_reg("ca", -10000.);
_k_sym = hoc_lookup("k_ion");
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_dparam_size(_mechtype, 6);
nrn_writes_conc(_mechtype, 0);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 IAHP /home/park/github/SingleCompartmentAL/x86_64/IAHP.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void make_mechanism() {
char buf[256];
int i, cnt;
Symbol* sp;
char* mname = gargstr(1);
//printf("mname=%s\n", mname);
check(mname);
char* classname = gargstr(2);
//printf("classname=%s\n", classname);
char* parnames = nil;
if (ifarg(3)) {
parnames = new char[strlen(gargstr(3)) + 1];
strcpy(parnames, gargstr(3));
}
//if(parnames) printf("parnames=%s\n", parnames);
Symbol* classsym = hoc_lookup(classname);
if (classsym->type != TEMPLATE) {
hoc_execerror(classname, "not a template");
}
cTemplate* tp = classsym->u.ctemplate;
Symlist* slist = tp->symtable;
char** m = make_m(true, cnt, slist, mname, parnames);
common_register(m, classsym, slist, alloc_mech, i);
for (sp = slist->first; sp; sp = sp->next) {
if (sp->type == VAR && sp->cpublic) {
sprintf(buf, "%s_%s", sp->name, m[1]);
Symbol* sp1 = hoc_lookup(buf);
sp1->u.rng.index = sp->u.oboff;
}
}
for (i=0; i < cnt; ++i) {
if (m[i]) {
delete [] m[i];
}
}
delete [] m;
delete [] parnames;
ret(1.);
}
void bbs_done() {
#if USEBBS
Symbol* sym = hoc_lookup("ParallelContext");
sym = hoc_which_template(sym);
hoc_Item* q, *ql;
ql = sym->u.ctemplate->olist;
q = ql->next;
if (q != ql) {
Object* ob = OBJ(q);
OcBBS* bbs = (OcBBS*)ob->u.this_pointer;
if (bbs->is_master()) {bbs->done();}
}
#endif
}
void _kextna_reg() {
int _vectorized = 1;
_initlists();
ion_reg("k", -10000.);
ion_reg("na", -10000.);
_k_sym = hoc_lookup("k_ion");
_na_sym = hoc_lookup("na_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 5);
_extcall_thread = (Datum*)ecalloc(4, sizeof(Datum));
_thread_mem_init(_extcall_thread);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 1, _thread_mem_init);
_nrn_thread_reg(_mechtype, 0, _thread_cleanup);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 14, 7);
nrn_writes_conc(_mechtype, 0);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 kextna /home/neuro/Documents/from_axon/ca1n1-mod/x86_64/kextna.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _kht_reg() {
int _vectorized = 0;
_initlists();
ion_reg("k", -10000.);
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_dparam_size(_mechtype, 3);
hoc_register_cvode(_mechtype, _ode_count, 0, 0, 0);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 kht /Users/lampochka/Desktop/GitHub/Spencermodel/x86_64/kht.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
JNIEXPORT jlong JNICALL Java_neuron_Neuron_getNewHObject
(JNIEnv *env, jclass, jstring name, jint narg){
jnisave
const char* cn = env->GetStringUTFChars(name, 0);
// Symbol* s = hoc_table_lookup(cn, hoc_top_level_symlist);
Symbol* s = hoc_lookup(cn);
if (!s || s->type != TEMPLATE) {
printf("getNewHObject could not lookup %s or it is not a template.\n", cn);
return 0;
}
env->ReleaseStringUTFChars(name, cn);
Object* o = hoc_newobj1(s, narg);
hoc_obj_ref(o);
jnirestore
return (jlong)o;
}
void _coarse_diffdemo_reg() {
int _vectorized = 1;
_initlists();
ion_reg("A", 2.0);
_A_sym = hoc_lookup("A_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 6, 2);
nrn_writes_conc(_mechtype, 0);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 cdiffdemo /Users/danielaaron/Documents/Research/NEURON/current/STEPS-NEURON/Diffusion Demo/x86_64/coarse_diffdemo.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _calH_reg() {
int _vectorized = 0;
_initlists();
ion_reg("ca", -10000.);
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 14, 3);
hoc_register_cvode(_mechtype, _ode_count, 0, 0, 0);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 calH /home/bandi/workspace/UCL/Poirazi2003/ModelDB_NEURON/mechanism/x86_64/calH.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _IT2_reg() {
int _vectorized = 1;
_initlists();
ion_reg("ca", -10000.);
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_dparam_size(_mechtype, 5);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 it2 /home/park/Programming/hoc/Belmabrouk/mod/x86_64/IT2.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _ca_debug_bh_reg() {
int _vectorized = 1;
_initlists();
ion_reg("ca", -10000.);
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 12, 3);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 ca_debug_Bh /Users/ossenimazidabiodoun/Documents/CA1_Electrophysiologic_Models/CA1_Electrophysiologic_Models/Bhalla_Model_Fonctionnel/Mod_Files/x86_64/ca_debug_bh.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _kaprox_reg() {
int _vectorized = 0;
_initlists();
ion_reg("k", -10000.);
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 9, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 kap /home/nmsutton/Documents/Software/MemoryModule/MemoryModule/obliques/x86_64/kaprox.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _it2_reg() {
int _vectorized = 0;
_initlists();
ion_reg("Ca", 2.0);
_Ca_sym = hoc_lookup("Ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_dparam_size(_mechtype, 5);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 it2 /Users/jiemei/Desktop/combined_v2/trial/interneuron/x86_64/it2.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _na_reg() {
int _vectorized = 1;
_initlists();
ion_reg("na", -10000.);
_na_sym = hoc_lookup("na_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 28, 5);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 na /Users/imagining/Documents/NIH_BRAIN/Action Potential/x86_64/na.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _cal2_reg() {
int _vectorized = 0;
_initlists();
ion_reg("ca", -10000.);
_ca_sym = hoc_lookup("ca_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 9, 5);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 cal /Users/Nicolas/Desktop/database/NEURON/ca3b/x86_64/cal2.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void nrniv_recalc_ptrs() {
// PlayRecord and PreSyn pointers
net_cvode_instance->recalc_ptrs();
hoc_List* hl;
hoc_Item* q;
#if HAVE_IV
// update pointers used by Graph
if (!grsym_) {
grsym_ = hoc_lookup("Graph");
assert(grsym_->type == TEMPLATE);
}
hl = grsym_->u.ctemplate->olist;
ITERATE(q, hl) {
Object* obj = OBJ(q);
Graph* g = (Graph*)obj->u.this_pointer;
if (g) {g->update_ptrs();}
}
void _NaxSH10_ChannelML_reg() {
int _vectorized = 1;
_initlists();
ion_reg("na", 1.0);
_na_sym = hoc_lookup("na_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 78, 3);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 NaxSH10_ChannelML /home/Simon/NML2_Test/AOB_mitral_cell/x86_64/NaxSH10_ChannelML.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _NaTs2_t_reg() {
int _vectorized = 1;
_initlists();
ion_reg("na", -10000.);
_na_sym = hoc_lookup("na_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 18, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 NaTs2_t /home/lastis/Desktop/Neurons/day4/hay_model/mod/x86_64/NaTs2_t.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _KA_i1_reg() {
int _vectorized = 0;
_initlists();
ion_reg("k", -10000.);
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
hoc_register_prop_size(_mechtype, 10, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 KA_i1 /home/neuro/Documents/from_axon/ca1n1-mod/x86_64/KA_i1.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _Na_soma_reg() {
int _vectorized = 1;
_initlists();
ion_reg("na", 1.0);
_na_sym = hoc_lookup("na_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
_nrn_thread_table_reg(_mechtype, _check_table_thread);
hoc_register_prop_size(_mechtype, 18, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 Na_soma /home/osboxes/optimizer_canon/tests/ca1_pc_simplification/mod_files/x86_64/Na_soma.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
void _NaxSH10_ChannelML_reg() {
int _vectorized = 1;
_initlists();
ion_reg("na", 1.0);
_na_sym = hoc_lookup("na_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 1);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
_nrn_thread_reg(_mechtype, 2, _update_ion_pointer);
_nrn_thread_table_reg(_mechtype, _check_table_thread);
hoc_register_prop_size(_mechtype, 14, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 NaxSH10_ChannelML /home/Simon/Channel_Kinetics/AccessoryOlfactoryBulb/MitralCell/neuroConstruct/AOB_MC_Single_Channel_Tests/generatedNEURON/x86_64/NaxSH10_ChannelML.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}