AliAnalysisGrid* CreateAlienHandler(TString mode="test",TString fname="testName"){
AliAnalysisAlien *plugin = new AliAnalysisAlien();
plugin->SetOverwriteMode();
plugin->SetExecutableCommand("aliroot -q -b");
plugin->SetRunMode(mode.Data());
plugin->SetNtestFiles(20);
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
//plugin->SetROOTVersion("v5-34-26");
plugin->SetAliROOTVersion("v5-07-20");
plugin->SetAliPhysicsVersion("vAN-20160203");
// Declare input data to be processed.
plugin->SetNrunsPerMaster(100);
plugin->SetSplitMaxInputFileNumber(15); // 3 in the LEGO trains
plugin->SetGridDataDir("/alice/data/2013/LHC13c/");
plugin->SetGridWorkingDir(Form("%s/",fname.Data()));
plugin->SetRunPrefix("000");
plugin->SetDataPattern("/ESDs/pass2/*/AliESDs.root");
plugin->SetAnalysisMacro("TaskDeuteronTreeTest.C");
plugin->SetExecutable("TaskDeuteronTreeTest.sh");
plugin->SetJDLName("TaskDeuteronTreeTest.jdl");
Int_t runnumbers[]={195596,195592};
for(Int_t irun=0;irun<2;irun++){
Printf("%d %d",irun,runnumbers[irun]);
plugin->AddRunNumber(runnumbers[irun]);
}
TString extraLibs;
plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_PHYSICS/include");
//plugin->SetAdditionalLibs("libCORRFW.so libPWGTools.so libPWGCFCorrelationsBase.so libPWGCFCorrelationsDPhi.so AliAnalysisTaskPhiCorrelations.cxx AliAnalysisTaskPhiCorrelations.h");
//plugin->SetAnalysisSource("AliAnalysisTaskPhiCorrelations.cxx");
plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
//plugin->SetDefaultOutputs(0);
//plugin->SetOutputFiles("AnalysisResults.root.root");
plugin->SetMergeViaJDL(kTRUE);
plugin->SetOneStageMerging(kFALSE);
//plugin->SetMaxMergeFiles(40);
//plugin->SetMaxMergeStages(4);
plugin->SetTTL(50000);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// Optionally modify split mode (default 'se')
//plugin->SetSplitMaxInputFileNumber();
plugin->SetSplitMode("se");
return plugin;
}
AliAnalysisGrid* CreateAlienHandler(const char* mode, bool isMC){
AliAnalysisAlien *plugin = new AliAnalysisAlien();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
plugin->SetRunMode(gridmode.Data());
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
plugin->SetAliPhysicsVersion("vAN-20170425-1");
plugin->SetExecutableCommand("aliroot -b -q");
// Declare the analysis source files names separated by blancs. To be compiled runtime
// using ACLiC on the worker nodes.
//plugin->SetAdditionalLibs("libPWGLFnuclex.so");
plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_PHYSICS/include");
// Declare all libraries (other than the default ones for the framework. These will benloaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
// To only save certain files, use SetDefaultOutputs(kFALSE), and then
// SetOutputFiles("list.root other.filename") to choose which files to save
plugin->SetDefaultOutputs();
//plugin->SetOutputFiles("list.root");
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro(Form("%s.C",kTaskName.Data()));
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
plugin->SetSplitMaxInputFileNumber(kJobSplitting);
// Optionally modify the executable name (default analysis.sh)
plugin->SetExecutable(Form("%s.sh",kTaskName.Data()));
// set number of test files to use in "test" mode
plugin->SetNtestFiles(2);
// file containing a list of chuncks to be used for testing
plugin->SetFileForTestMode("testdata");
// Optionally resubmit threshold.
plugin->SetMasterResubmitThreshold(90);
// Optionally set time to live (default 30000 sec)
plugin->SetTTL(30000);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify the name of the generated JDL (default analysis.jdl)
plugin->SetJDLName(Form("%s.jdl",kTaskName.Data()));
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// Optionally modify split mode (default 'se')
plugin->SetSplitMode("se");
return plugin;
}
AliAnalysisGrid *CreateAlienHandler()
{
AliAnalysisAlien *plugin = new AliAnalysisAlien();
//plugin->SetOverwriteMode();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
//plugin->SetRunMode("test");
plugin->SetRunMode("full");
//plugin->SetRunMode("terminate");
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
plugin->SetROOTVersion("v5-34-08-6");
plugin->SetAliROOTVersion("vAN-20141031");
// Set the path for finding the data
plugin->SetGridDataDir("/alice/data/2010/LHC10h/");
plugin->SetDataPattern("ESDs/pass2/AOD086/*/AliAOD.root"); // for testing over multiple files
//plugin->SetDataPattern("ESDs/pass2/AOD086/0001/AliAOD.root"); // for testing over a single file
plugin->SetRunPrefix("000");
//plugin->AddRunNumber(137161);
gROOT->ProcessLine(".L AddRunNumbers.C");
int added = AddRunNumbers(plugin,0,95,"lhc10h");
if(added<0) return NULL;
// Set the path for the output
plugin->SetGridWorkingDir("TaskExample"); // $HOME/TaskExample
plugin->SetGridOutputDir("OutputTesting_X005"); // $HOME/TaskExample/OutputTesting
// Specify the source code for the analysis
plugin->SetAnalysisSource("AliAnalysisTaskExample.cxx"); // class file
plugin->SetAdditionalLibs("AliAnalysisTaskExample.h AliAnalysisTaskExample.cxx"); // header space class
// Default outputs (?)
plugin->SetDefaultOutputs(); // ALWAYS use default outputs, code warns then crashes if not
// The rest of these are optional, though some are very useful
plugin->SetSplitMaxInputFileNumber(100); // default 100 input files/subjob
plugin->SetMaxInitFailed(5); // default (?) jobs fail to kill waiting subjobs
plugin->SetMasterResubmitThreshold(90); // default (?) resubmit threshold
plugin->SetTTL(50000); // default 30000 sec time to live
plugin->SetAnalysisMacro("TaskExample.C"); // default "MyAnalysis.C"
plugin->SetExecutable("TaskExample.sh"); // default "analysis.sh"
plugin->SetJDLName("TaskExample.jdl"); // default "analysis.jdl"
plugin->SetInputFormat("xml-single"); // default "xml-single"
plugin->SetPrice(1); // default 1 price to modify job
plugin->SetSplitMode("se"); // default "se"
return plugin;
}
//___________________________________________________________
AliAnalysisAlien *CreateAlienHandler(Bool_t isProof){
//if(!AliAnalysisGrid::CreateToken()) return NULL;
if(!FindDependentPackages()) return NULL;
AliAnalysisAlien *alienplugin = new AliAnalysisAlien;
// common settings
alienplugin->SetAliROOTVersion(aliroot_version);
alienplugin->SetROOTVersion(root_version);
alienplugin->SetAPIVersion(api_version);
alienplugin->SetAdditionalLibs("libPWGHFhfe.so");
alienplugin->SetDefaultOutputs(kTRUE);
if(isProof){
// proof mode
if(analysis_mode.Contains("test")) alienplugin->SetRunMode("test");
alienplugin->SetProofCluster("alice_caf.cern.ch");
alienplugin->SetRootVersionForProof(root_version);
alienplugin->SetAliRootMode("aliroot");
} else {
// grid mode
alienplugin->SetRunMode(analysis_mode.Data());
// default setting that need no deeper logic
alienplugin->SetJDLName("hfeanalysis.jdl");
alienplugin->SetExecutable("hfeanalysis.sh");
alienplugin->SetAnalysisMacro("hfeanalysis.C");
alienplugin->SetValidationScript("hfevalidate.sh");
alienplugin->SetGridWorkingDir("hfeanalysis");
/*alienplugin->SetOutputArchive();
alienplugin->SetDefaultOutputs();*/
alienplugin->SetOverwriteMode();
alienplugin->SetFastReadOption();
alienplugin->SetSplitMaxInputFileNumber(5);
alienplugin->SetTTL(30000);
alienplugin->SetInputFormat("xml-single");
alienplugin->SetPrice(1);
alienplugin->SetSplitMode("se");
alienplugin->SetNtestFiles(1);
// Merging setting, only needed in terminate or full mode
if(analysis_mode.Contains("full") || analysis_mode.Contains("terminate")){
alienplugin->SetMergeViaJDL();
alienplugin->SetMaxMergeFiles(50);
alienplugin->SetMaxMergeStages(5);
}
}
return alienplugin;
}
AliAnalysisGrid *CreateAlienHandler()
{
AliAnalysisAlien *plugin = new AliAnalysisAlien();
plugin->SetRunMode("test"); // generate files and make local test on my PC
//plugin->SetRunMode("offline"); // generate files that can be modified; no submission
//plugin->SetRunMode("submit"); // submit files generated with offline mode
//plugin->SetRunMode("full"); // generate files and submit
//plugin->SetRunMode("terminate"); // do merging only in one job
plugin->SetAPIVersion("V1.1x");
plugin->SetAliPhysicsVersion("vAN-20151115-1");
plugin->SetNtestFiles(1);
//plugin->SetROOTVersion("v5-34-08-6");
//plugin->SetAliROOTVersion("vAN-20141031");
plugin->SetGridDataDir("/alice/data/2010/LHC10h/");
plugin->SetDataPattern("ESDs/pass2/AOD160/0008/AliAOD.root");
plugin->SetRunPrefix("000");
int runNumber[] = {139510, 139507};
int size = sizeof(runNumber)/sizeof(runNumber[0]);
for(int i=0; i<size; i++) {
plugin->AddRunNumber(runNumber[i]);
}
//plugin->AddRunNumber(139510);
plugin->SetGridWorkingDir("TaskFlow"); // $HOME/TaskFlow
plugin->SetGridOutputDir("OutputFlow"); // TaskFlow/OutputFlow
// plugin->AddIncludePath("-I$ROOTSYS/include -I$ALICE_ROOT/include");
plugin->SetAnalysisSource("AliAnalysisTaskFlow.cxx");
plugin->SetAdditionalLibs("AliAnalysisTaskFlow.h AliAnalysisTaskFlow.cxx");
plugin->SetDefaultOutputs();
plugin->SetOutputToRunNo();
plugin->SetAnalysisMacro("Flow.C");
plugin->SetSplitMaxInputFileNumber(400);
plugin->SetMasterResubmitThreshold(90);
plugin->SetTTL(20000);
plugin->SetJDLName("Flow.jdl");
plugin->SetExecutable("Flow.sh");
// plugin->SetExecutableCommand("aliroot -b -q");
return plugin;
}
//_______________________________| CreateAlienHandler |________________________________
AliAnalysisGrid* CreateAlienHandler()
{
AliAnalysisAlien *Plugin = new AliAnalysisAlien();
Plugin->SetRunMode(fPluginMode.Data());
Plugin->SetUser(fUsername.Data());
Plugin->SetAPIVersion("V1.1x");
Plugin->SetROOTVersion("v5-34-30-alice-12");
Plugin->SetAliROOTVersion("v5-07-20-4");
Plugin->SetAliPhysicsVersion("vAN-20160129-1");
Plugin->SetNtestFiles(1);
Plugin->SetFileForTestMode(TestFilesWPlugin.Data());
// Set data search pattern for DATA grid Mode
Plugin->SetGridDataDir("/alice/sim/2013/LHC13b2_efix_p1"); // specify MC sample
if(readAOD) Plugin->SetDataPattern("AOD/*AliAOD.root");// specify AOD set
else Plugin->SetDataPattern("*/AliESDs.root");
Int_t totruns=0;
//gROOT->LoadMacro("$ALICE_PHYSICS/PWGHF/vertexingHF/AddGoodRuns.C");
gROOT->LoadMacro("AddGoodRuns.C");
totruns += AddGoodRuns(Plugin,"LHC13b","LHC13b2_efix_p1"); //Set accordingly
Plugin->SetNrunsPerMaster(totruns);
Plugin->SetGridWorkingDir("SingleTrkEff/LHC13b2_efix_p1/16Feb2016/");
Plugin->SetGridOutputDir("out");
Plugin->SetExecutable("STE16Feb2016.sh");
Plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_PHYSICS -I$ALICE_PHYSICS/include -I$ALICE_PHYSICS/ITS -I$ALICE_PHYSICS/TPC -I$ALICE_PHYSICS/CONTAINERS -I$ALICE_PHYSICS/STEER/STEER -I$ALICE_PHYSICS/STEER/STEERBase -I$ALICE_PHYSICS/STEER/ESD -I$ALICE_PHYSICS/STEER/AOD -I$ALICE_PHYSICS/TRD -I$ALICE_PHYSICS/macros -I$ALICE_PHYSICS/ANALYSIS -I$ALICE_PHYSICS/OADB -g");
Plugin->SetSplitMaxInputFileNumber(5);
Plugin->SetDefaultOutputs(kTRUE);
Plugin->SetMergeViaJDL(kTRUE); // Merge Via JDL
Plugin->SetOneStageMerging(kFALSE);
Plugin->SetMaxMergeStages(2);
Plugin->SetAnalysisMacro("STE16Feb2016.C");
Plugin->SetJDLName("STE16Feb2016.jdl");
return Plugin;
}
void RunMacro(){
// check the function for asymmetric TPC cut in ConfigHFEemcalMod....the rest is still necessary????
// Firstly, set some variables
const char* launch = "grid"; // grid, local (if your data is on your local machine, doesn't connect at all)
const char* mode = "test"; //test, full, terminate (test= connect to grid but run locally, full= run on grid, terminate= merge output on grid)
Bool_t pre_final_stage = kTRUE; //TRUE = merging done on grid, FALSE = merge happens locally
Int_t cyclenumber = 1;
Bool_t debug = kTRUE;
char* work_dir = "PhiCorrelations_LHC16q_0_20_noveto";
char* output_dir = "output_2018_10_22_FAST";
Int_t ttl = 50000;
Int_t noffiles = 40;
Int_t runcycle[]={0,1,31};
//Int_t runcycle[]={0,16,31};
Bool_t UseParfiles = kFALSE;
// load libraries
LoadLibraries();
// create and customize the alien handler
AliAnalysisAlien *alienHandler = new AliAnalysisAlien();
alienHandler->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/EMCAL -I$ALICE_ROOT/PYTHIA6 -I$ALICE_ROOT/ANALYSIS -I$ALICE_PHYSICS/PWGGA -I$ALICE_PHYSICS/PWGHF -I$ALICE_PHYSICS/PWGHF/hfe -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_PHYSICS/OADB -I$ALICE_PHYSICS/PWGHF/base -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_PHYSICS/OADB/macros -I$ALICE_PHYSICS/PWGCF/Correlations -I$ALICE_PHYSICS/PWGCF -I$ALICE_PHYSICS/PWGCF/Correlations/Base -I$ALICE_PHYSICS/include -g");
alienHandler->SetAdditionalLibs("AliAnalysisTaskHadronPhiCorr_current.cxx AliAnalysisTaskHadronPhiCorr_current.h AddTaskHadronPhiCorr_current.C libpythia6.so libEGPythia6.so libAliPythia6.so libPWGHFhfe.so libCDB.so libSTEER.so libCORRFW.so libPWGflowBase.so libPWGflowTasks.so libGui.so libProof.so libMinuit.so libXMLParser.so libRAWDatabase.so libRAWDatarec.so libCDB.so libSTEERBase.so libSTEER.so libTPCbase.so libTOFbase.so libTOFrec.so libTRDbase.so libVZERObase.so libVZEROrec.so libT0base.so libT0rec.so libPWGTools.so libPWGCFCorrelationsBase.so");
alienHandler->SetAnalysisSource("AliAnalysisTaskHadronPhiCorr_current.cxx");
//alienHandler->SetOverwriteMode();
alienHandler->SetRunMode(mode);
alienHandler->SetNtestFiles(2);
//alienHandler->SetAPIVersion("V1.1x");
alienHandler->SetAliPhysicsVersion("vAN-20170731-1");
//alienHandler->SetFileForTestMode("File_LHC12dPass1.txt"); //txt file that tells where to look for local files if launch=local
//alienHandler->SetGridDataDir("/alice/sim/LHC10d4/");
//alienHandler->SetDataPattern("*ESDs.root");
alienHandler->SetGridDataDir("//alice/data/2016/LHC16q/");
alienHandler->SetDataPattern("*/pass1_FAST/AOD/*/*AOD.root");
//alienHandler->SetDataPattern("*/pass4/AOD/*AOD.root");
alienHandler->SetRunPrefix("000"); // IMPORTANT! Only need for real data, comment this line out for MC data
//LHC12d
//Int_t runArray[] = {186320, 186319, 186318, 186229, 186208, 186205, 186200, 186167, 186165, 186164, 186163, 185912, 185909, 185784, 185778, 185776, 185775, 185768, 185765, 185764, 185757, 185756, 185738, 185735, 185734, 185701, 185699, 185698, 185697, 185695, 185687, 185680, 185589, 185588, 185583, 185582, 185581, 185580, 185578};
//Int_t runArray[] = {186320, 186319, 186318, 186229, 186208, 186205, 186200, 186167, 186165, 186164, 186163, 185912, 185909, 185784, 185778, 185776, 185775, 185768, 185765, 185764, 185757, 185756, 185738, 185735, 185734, 185701, 185699, 185698, 185697, 185695, 185687, 185680, 185589, 185588, 185583, 185582, 185581, 185580, 185578, 185575, 185574, 185565, 185563, 185474, 185465, 185461, 185457, 185375, 185371, 185363, 185362, 185361, 185360, 185359, 185356, 185351, 185350, 185349, 185303, 185302, 185300, 185299, 185296, 185293, 185292, 185291, 185289, 185288, 185284, 185282, 185221, 185217, 185208, 185206, 185203, 185198, 185196, 185189};
//LHC13b
//Int_t runArray[] = {195483, 195482, 195481, 195480, 195479, 195478, 195391, 195389, 195351, 195346, 195344};
//LHC13c
//Int_t runArray[] = {195529, 195531, 195566, 195567, 195568, 195592, 195593, 195596, 195633, 195635, 195644, 195673, 195675, 195677};
//LHC10d4 - MC Data
//Int_t runArray[] = {119159, 119161, 119163, 119841, 119842, 119844, 119845, 119846, 119849, 119853, 119856, 119859, 119862, 120067, 120069, 120072, 120073, 120076, 120079, 120244, 120503, 120504, 120505, 120616, 120617, 120671, 120741, 120750, 120758, 120820, 120821, 120822, 120823, 120824, 120825, 120829};
// Int_t runArray[] = {120073}; //for testing why files were being opened but not closed
//LHC16r - 8 TeV pPb data
//Int_t runArray[] = {266318, 266317, 266316, 266305, 266304, 266300, 266299, 266296, 266208, 266197, 266196, 266193, 266190, 266189, 266187, 266117, 266086, 266085, 266084, 266083, 266081, 266076, 266074, 266034, 265797, 265795, 265789, 265788, 265756, 265754, 265746, 265744, 265742, 265741, 265714, 265713,265709, 265705, 265701, 265700, 265698, 265697, 265696, 265607, 265596, 265594};
//Int_t runArray[] = {266318, 266317, 266316, 266208, 266197, 266196, 266187, 265754, 265744, 265607, 265596, 265594};
//LHC16q - 5 TeV pPb data
Int_t runArray[] = {265525, 265521, 265501, 265500, 265499, 265435, 265427, 265426, 265425, 265424, 265422, 265421, 265420, 265419, 265388, 265387, 265385, 265384, 265383, 265381, 265378, 265377, 265344, 265343, 265342, 265339, 265338, 265336, 265334, 265332, 265309};
for (Int_t i = runcycle[cyclenumber - 1]; i < runcycle[cyclenumber] ; i++)
{
if (i == sizeof(runArray) / sizeof(runArray[1])) break;
alienHandler->AddRunNumber(runArray[i]);
}
printf("\n\nSetting Up alienHandler.\n\n");
alienHandler->SetGridWorkingDir(work_dir);
alienHandler->SetGridOutputDir(output_dir);
alienHandler->SetDefaultOutputs(kTRUE);
alienHandler->SetAnalysisMacro("PhiInvMass.C");
alienHandler->SetSplitMaxInputFileNumber(noffiles);
alienHandler->SetExecutable("PhiInvMass.sh");
alienHandler->SetExecutableCommand("aliroot -b -q");
alienHandler->SetTTL(ttl); //10000
alienHandler->SetInputFormat("xml-single");
alienHandler->SetJDLName("PhiInvMass.jdl");
alienHandler->SetPrice(1);
alienHandler->SetSplitMode("se");
alienHandler->SetMasterResubmitThreshold(10);
alienHandler->SetMergeExcludes("EventStat_temp.root");
alienHandler->SetOutputToRunNo(kTRUE);
alienHandler->SetKeepLogs(kTRUE);
alienHandler->SetMaxMergeFiles(15);
alienHandler->SetMaxMergeStages(7);
alienHandler->SetMergeViaJDL(pre_final_stage);
// alienHandler->SetOneStageMerging(kFALSE); //???????????????????????????????-------------------
if (!alienHandler) return;
// load the necessary macros
//gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
//gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
// Use AliRoot includes to compile our task
gROOT->ProcessLine(".include $ALICE_ROOT/include");
gROOT->ProcessLine(".include $ALICE_ROOT/EMCAL");
gROOT->ProcessLine(".include $ALICE_PHYSICS/include");
gROOT->ProcessLine(".include $ALICE_ROOT/ANALYSIS/");
gROOT->ProcessLine(".include $PWD/.");
gSystem->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/EMCAL -I$ALICE_ROOT/PYTHIA6 -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_PHYSICS/OADB -I$ALICE_PHYSICS/PWGHF/base -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_PHYSICS/OADB -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_PHYSICS/PWGCF/Correlations/Base -I$ALICE_PHYSICS/PWGCF/Correlations -g ");
// gSystem->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/macros -I$ALICE_PHYSICS/include -g");
//printf("\n!!!!!!!!!!!!!!!!!!!!!!\n AliAnalysis Manager \n\n");
AliAnalysisManager *mgr = new AliAnalysisManager("PhiAnalysis");
mgr->SetGridHandler(alienHandler);
AliAODInputHandler* aodH = new AliAODInputHandler();
mgr->SetInputEventHandler(aodH);
// AliESDInputHandler* esdH = new AliESDInputHandler();
// mgr->SetInputEventHandler(esdH);
// AliMCEventHandler* mcH = new AliMCEventHandler();
// mgr->SetMCtruthEventHandler(mcH);
// mcH->SetReadTR(kFALSE);
//gROOT->LoadMacro("AddTaskPhiCorr.C");
gROOT->LoadMacro("./AliAnalysisTaskHadronPhiCorr.cxx++g");
//gROOT->LoadMacro("$ALICE_PHYSICS/OADB/macros/AddTaskPhysicsSelection.C");
//gROOT->LoadMacro("$ALICE_PHYSICS/OADB/COMMON/MULTIPLICITY/macros/AddTaskMultSelection.C");
//gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
//switch on aliphysicsselection
gInterpreter->ProcessLine(Form(".x %s", gSystem->ExpandPathName("$ALICE_PHYSICS/OADB/COMMON/MULTIPLICITY/macros/AddTaskMultSelection.C")));
AliPhysicsSelectionTask* physSelTask = reinterpret_cast<AliPhysicsSelectionTask*>(gInterpreter->ProcessLine(Form(".x %s(kFALSE, kTRUE)", gSystem->ExpandPathName("$ALICE_PHYSICS/OADB/macros/AddTaskPhysicsSelection.C"))));
//Only set true for MC
Bool_t isMC = kFALSE;
gInterpreter->ProcessLine(Form(".x %s(kFALSE)", gSystem->ExpandPathName("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C")));
//create a task
AliAnalysisTaskHadronPhiCorr_current *task1 = reinterpret_cast<AliAnalysisTaskHadronPhiCorr_current*>(gInterpreter->ProcessLine(Form(".x %s(kFALSE, 0.0, 20.0)", gSystem->ExpandPathName("AddTaskHadronPhiCorr_current.C"))));
//AliAnalysisTaskHadronPhiCorr_current *task2 = reinterpret_cast<AliAnalysisTaskHadronPhiCorr_current*>(gInterpreter->ProcessLine(Form(".x %s(true, 10.0, 20.0)", gSystem->ExpandPathName("AddTaskHadronPhiCorr_current.C"))));
//AliAnalysisTaskHadronPhiCorr_current *task3 = reinterpret_cast<AliAnalysisTaskHadronPhiCorr_current*>(gInterpreter->ProcessLine(Form(".x %s(kFALSE, 20.0, 40.0)", gSystem->ExpandPathName("AddTaskHadronPhiCorr_current.C"))));
//AliAnalysisTaskHadronPhiCorr_current *task4 = reinterpret_cast<AliAnalysisTaskHadronPhiCorr_current*>(gInterpreter->ProcessLine(Form(".x %s(kTRUE, 40.0, 90.0)", gSystem->ExpandPathName("AddTaskHadronPhiCorr_current.C"))));
task1->SetKaonEtaCut(0.8);
task1->SetKaonTPCCut(3.0);
task1->SetKaonTOFCut(3.0);
task1->SetTOFVeto(kFALSE);
task1->SetKaonTrkBit(1024);
task1->SetAssocTrkBit(1024);
task1->SetTrigTrkBit(AliAODTrack::kIsHybridGCG);
task1->SetZVertexMin(-10.0);
task1->SetZVertexMax(10.0);
task1->SetZVertexNbins(10);
task1->SetCentEstimator("V0A");
if (!mgr->InitAnalysis())
return;
mgr->PrintStatus();
//fprintf(stdout, "\n!!!!!!!!!!!!!\nAbout to launch analysis... \n");
// Start analysis in grid.
mgr->StartAnalysis(launch);
//printf("\n!!!!!!!!!!!!!\nDone with StartAnalysis(launch)\n");
fflush(stdout);
}
AliAnalysisGrid* runWithHandler()
{
// Check if user has a valid token, otherwise make one. This has limitations.
if (!AliAnalysisGrid::CreateToken()) return NULL;
AliAnalysisAlien *plugin = new AliAnalysisAlien();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
plugin->SetRunMode("full");
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
plugin->SetROOTVersion("v5-26-00b-2");
plugin->SetAliROOTVersion("v4-19-10-AN");
// Declare input data to be processed.
// Method 1: Create automatically XML collections using alien 'find' command.
// Define production directory LFN
//plugin->SetGridDataDir("/alice/sim/LHC10a6");
// On real reconstructed data:
plugin->SetGridDataDir("/alice/data/2009/LHC09d");
// Set data search pattern
//plugin->SetDataPattern("*ESDs.root");
// Data pattern for reconstructed data
plugin->SetDataPattern("*ESDs/pass4/*ESDs.root");
plugin->SetRunPrefix("000"); // real data
// ...then add run numbers to be considered
plugin->AddRunNumber(104824);
// plugin->AddRunNumber(104065); // real data
// plugin->SetOutputSingleFolder("output");
// plugin->SetOutputToRunNo();
// Method 2: Declare existing data files (raw collections, xml collections, root file)
// If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
// XML collections added via this method can be combined with the first method if
// the content is compatible (using or not tags)
// plugin->AddDataFile("tag.xml");
// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
// Define alien work directory where all files will be copied. Relative to alien $HOME.
plugin->SetGridWorkingDir("TrackletsTask");
// Declare alien output directory. Relative to working directory.
plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
// Declare the analysis source files names separated by blancs. To be compiled runtime
// using ACLiC on the worker nodes.
plugin->SetAnalysisSource("AliTrackletsTask.cxx");
// Declare all libraries (other than the default ones for the framework. These will be
// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
plugin->SetAdditionalLibs("AliTrackletsTask.h AliTrackletsTask.cxx");
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
//plugin->SetOutputFiles("Pt.ESD.1.root");
plugin->SetDefaultOutputs();
// Optionally define the files to be archived.
// plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:*.root@ALICE::NIHAM::File");
plugin->SetOutputArchive("log_archive.zip:stdout,stderr");
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro("MacroTrackletsTask.C");
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
plugin->SetSplitMaxInputFileNumber(50);
// Optionally modify the executable name (default analysis.sh)
plugin->SetExecutable("ExecutableTrackletsTask.sh");
// Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
// plugin->SetMaxInitFailed(5);
// Optionally resubmit threshold.
// plugin->SetMasterResubmitThreshold(90);
// Optionally set time to live (default 30000 sec)
plugin->SetTTL(28000);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify the name of the generated JDL (default analysis.jdl)
plugin->SetJDLName("JdlTrackletsTask.jdl");
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// Optionally modify split mode (default 'se')
plugin->SetSplitMode("se");
return plugin;
}
void runCPVAnalysis(const char *runmode = "full")
{
// set if you want to run the analysis locally (kTRUE), or on grid (kFALSE)
// Bool_t local = kFALSE;
Bool_t local = kTRUE;
// if you run on grid, specify test mode (kTRUE) or full grid model (kFALSE)
// Bool_t gridTest = kTRUE;
Bool_t gridTest = kFALSE;
// since we will compile a class, tell root where to look for headers
gROOT->ProcessLine(".include $ROOTSYS/include");
gROOT->ProcessLine(".include $ALICE_ROOT/include");
// create the analysis manager
AliAnalysisManager *mgr = new AliAnalysisManager("AnalysisTaskCPV");
AliESDInputHandler *esdH = new AliESDInputHandler();
mgr->SetInputEventHandler(esdH);
//PID task
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
AliAnalysisTask *taskPID = AddTaskPIDResponse(/*Bool_t isMC=*/ kFALSE, /*Bool_t autoMCesd=*/kTRUE,
/*Bool_t tuneOnData=*/kTRUE);
// // Add physics selection
gROOT->LoadMacro("$ALICE_PHYSICS/OADB/macros/AddTaskPhysicsSelection.C");
AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection();
physSelTask->GetPhysicsSelection()->SetUseBXNumbers(kFALSE);// ---> ???
// load the addtask macro
gROOT->LoadMacro("AddTaskCPV.C");
// create an instance of your analysis task
AliAnalysisTaskCPV *task = AddTaskCPV();
task->SetRCPV(428.3);
task->SelectCollisionCandidates(AliVEvent::kINT7);
if(!mgr->InitAnalysis()) return;
mgr->SetDebugLevel(2);
mgr->PrintStatus();
mgr->SetUseProgressBar(1, 25);
if(local) {
// if you want to run locally, we need to define some input
TChain* chain = new TChain("esdTree");
// add a few files to the chain (change this so that your local files are added)
TGrid::Connect("alien://");
chain->Add("alien:///alice/data/2015/LHC15n/000244340/pass2/15000244340020.100/AliESDs.root");
// start the analysis locally, reading the events from the tchain
mgr->StartAnalysis("local", chain);
} else {
// if we want to run on grid, we create and configure the plugin
AliAnalysisAlien *alienHandler = new AliAnalysisAlien();
alienHandler->SetCheckCopy(kFALSE);
// also specify the include (header) paths on grid
alienHandler->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_PHYSICS/include");
// select the aliphysics version. all other packages
// are LOADED AUTOMATICALLY!
alienHandler->SetAliPhysicsVersion("vAN-20170215-1");
// set the Alien API version
alienHandler->SetAPIVersion("V1.1x");
// select the input data
alienHandler->SetGridDataDir("/alice/data/2015/LHC15n");
alienHandler->SetDataPattern("/pass2/*/AliESDs.root");
const Int_t runList[] = {244340, 244343};
const Int_t nRuns = 2;
// const Int_t runList[] = {244340, 244343, 244351, 244355, 244359,
// 244364, 244377, 244411, 244416, 244418,
// 244421, 244453, 244480, 244481, 244482,
// 244483, 244484, 244531, 244540, 244542,
// 244617, 244618, 244627, 244628};
// const Int_t nRuns = 24;
// MC has no prefix, data has prefix 000
alienHandler->SetRunPrefix("000");
// runnumber
for (Int_t iRun=0; iRun<nRuns; iRun++) {
alienHandler->AddRunNumber(runList[iRun]);
}
// number of files per subjob
alienHandler->SetSplitMaxInputFileNumber(50);
alienHandler->SetExecutable("CPVTask.sh");
// specify how many seconds your job may take
alienHandler->SetTTL(36000);
alienHandler->SetJDLName("CPVTask.jdl");
alienHandler->SetOutputToRunNo(kTRUE);
alienHandler->SetKeepLogs(kTRUE);
// merging: run with kTRUE to merge on grid
// after re-running the jobs in SetRunMode("terminate")
// (see below) mode, set SetMergeViaJDL(kFALSE)
// to collect final results
alienHandler->SetMaxMergeStages(2);
alienHandler->SetMergeViaJDL(kTRUE);
// define the output folders
alienHandler->SetGridWorkingDir("CPVWorkingDir");
alienHandler->SetGridOutputDir("CPVOutputDir_R428");
// connect the alien plugin to the manager
mgr->SetGridHandler(alienHandler);
if(gridTest) {
// speficy on how many files you want to run
alienHandler->SetNtestFiles(1);
// and launch the analysis
alienHandler->SetRunMode("test");
mgr->StartAnalysis("grid");
} else {
// else launch the full grid analysis
alienHandler->SetRunMode(runmode);
mgr->StartAnalysis("grid");
}
}
}
//______________________________________________________________________________
AliAnalysisGrid* CreateAlienHandler(const char *taskname, const char *gridmode,
const char *proofcluster, const char *proofdataset)
{
AliAnalysisAlien *plugin = new AliAnalysisAlien();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
plugin->SetRunMode(gridmode);
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
plugin->SetROOTVersion("v5-34-08");
plugin->SetAliROOTVersion("vAN-20140915");
plugin->SetExecutableCommand("aliroot -b -q");
// Declare input data to be processed.
// Method 1: Create automatically XML collections using alien 'find' command.
// Define production directory LFN
// plugin->SetGridDataDir("/alice/data/2010/LHC10h");
// plugin->SetGridDataDir(" /alice/data/2011/LHC11h_2/"); //sim
// plugin->SetDataPattern("pass2/*AliAOD.root"); // sim
plugin->SetGridDataDir("/alice/data/2011/LHC11h_2/"); //sim
plugin->SetDataPattern("*/pass2/*AliESDs.root"); // sim
plugin->SetRunPrefix("000"); // real data
Int_t runlist[] = { // Counter
170309, 170308, 170306, 170270, 170269, 170268, 170230, 170228, 170204, 170203, // 10
170193, 170163, 170159, 170155, 170081, 170027, 169859, 169858, 169855, 169846, // 20
169838, 169837, 169835, 169417, 169415, 169411, 169238, 169167, 169160, 169156, // 30
169148, 169145, 169144, 169138, 169094, 169091, 169035, 168992, 168988, 168826, // 40
168777, 168514, 168512, 168511, 168467, 168464, 168460, 168458, 168362, 168361, // 50
168342, 168341, 168325, 168322, 168311, 168310, 167988, 167987 // 58
};
for(Int_t i = 0; i < 9; i++)
plugin->AddRunNumber(runlist[i]);
plugin->SetNrunsPerMaster(3);
plugin->SetOutputToRunNo();
// Method 2: Declare existing data files (raw collections, xml collections, root file)
// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
// Define alien work directory where all files will be copied. Relative to alien $HOME.
plugin->SetGridWorkingDir(taskname);
// Declare alien output directory. Relative to working directory.
plugin->SetGridOutputDir("output"); // In this case will be $HOME/taskname/out
// plugin->SetAdditionalLibs("libTree.so libGeom.so libPhysics.so libVMC.so libMinuit.so libSTEERBase.so libESD.so libAOD.so libANALYSIS.so libOADB.so libANALYSISalice.so libCORRFW.so libPWGHFbase.so libPWGflowBase.so libPWGflowTasks.so libPWGHFvertexingHF.so");
// plugin->SetAdditionalLibs("libCORRFW.so libPWGHFbase.so libPWGflowBase.so libPWGflowTasks.so libPWGHFvertexingHF.so");
plugin->SetAnalysisSource("AliAnalysisTaskFlowd.cxx");
//plugin->SetAdditionalLibs("AliAnalysisTaskFlowd.h AliAnalysisTaskFlowd.cxx ");
cout<<"-->>>>>>>>>>>>>>>>>>>>>>>>> 1"<<endl;
// Declare the analysis source files names separated by blancs. To be compiled runtime
// using ACLiC on the worker nodes.
//plugin->SetAdditionalLibs("libPWGHFbase.so libPWGflowBase.so libPWGflowTasks.so libPWGHFvertexingHF.so AliAODMuonReplicator0.so");
cout<<"-->>>>>>>>>>>>>>>>>>>>>>>>> 2"<<endl;
// plugin->SetAdditionalLibs("libTree.so libGeom.so libPhysics.so libVMC.so libMinuit.so libSTEERBase.so libESD.so libAOD.so libANALYSIS.so libOADB.so libANALYSISalice.so libCORRFW.so libPWGHFbase.so libPWGflowBase.so libPWGflowTasks.so libPWGHFvertexingHF.so");
// plugin->SetAnalysisSource("AliAnalysisTaskESDMuonFilterO.cxx");
//plugin->SetAnalysisSource("AliAODMuonReplicator0.cxx");
// Declare all libraries (other than the default ones for the framework. These will be
// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
// plugin->SetAdditionalLibs("AliAODMuonReplicator0_cxx.so");
// plugin->SetAdditionalLibs("AliAnalysisTaskESDMuonFilterO_cxx.so");
//questo
plugin->SetAdditionalLibs("libSTEERBase.so libESD.so AliAnalysisTaskFlowd.h AliAnalysisTaskFlowd.cxx libPWGflowBase.so libPWGflowTasks.so libPWGHFbase.so libPWGHFvertexingHF.so");
plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");
// plugin->SetAdditionalLibs("AliAODMuonReplicator0.h AliAODMuonReplicator0.cxx");
// plugin->SetAdditionalLibs("AliAnalysisTaskESDMuonFilterO.h AliAnalysisTaskESDMuonFilterO.cxx");
//plugin->SetAdditionalLibs("AliAODMuonReplicator0.h AliAODMuonReplicator0.cxx AliAnalysisTaskESDMuonFilterO.h AliAnalysisTaskESDMuonFilterO.cxx");
cout<<"-->>>>>>>>>>>>>>>>>>>>>>>>> 3"<<endl;
// plugin->SetAdditionalLibs("AliAODMuonReplicator0.h AliAODMuonReplicator0.cxx");
// plugin->SetAdditionalLibs("AliAnalysisTaskESDMuonFilterO.h AliAnalysisTaskESDMuonFilterO.cxx");
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
// To only save certain files, use SetDefaultOutputs(kFALSE), and then
// SetOutputFiles("list.root other.filename") to choose which files to save
plugin->SetDefaultOutputs();
//plugin->SetOutputFiles("list.root");
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro(Form("%s.C",taskname));
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
plugin->SetSplitMaxInputFileNumber(10);
// Optionally modify the executable name (default analysis.sh)
plugin->SetExecutable(Form("%s.sh",taskname));
// set number of test files to use in "test" mode
plugin->SetNtestFiles(1);
// file containing a list of chuncks to be used for testin
plugin->SetFileForTestMode("testdata");
// Optionally resubmit threshold.
plugin->SetMasterResubmitThreshold(90);
// Optionally set time to live (default 30000 sec)
plugin->SetTTL(30000);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify the name of the generated JDL (default analysis.jdl)
plugin->SetJDLName(Form("%s.jdl",taskname));
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// Optionally modify split mode (default 'se')
plugin->SetSplitMode("se");
//----------------------------------------------------------
//--- PROOF MODE SPECIFIC SETTINGS ------------
//----------------------------------------------------------
// Proof cluster
plugin->SetProofCluster(proofcluster);
// Dataset to be used
plugin->SetProofDataSet(proofdataset);
// May need to reset proof. Supported modes: 0-no reset, 1-soft, 2-hard
plugin->SetProofReset(0);
// May limit number of workers
plugin->SetNproofWorkers(0);
// May limit the number of workers per slave
plugin->SetNproofWorkersPerSlave(1);
// May use a specific version of root installed in proof
plugin->SetRootVersionForProof("current");
// May set the aliroot mode. Check http://aaf.cern.ch/node/83
plugin->SetAliRootMode("default"); // Loads AF libs by default
// May request ClearPackages (individual ClearPackage not supported)
plugin->SetClearPackages(kFALSE);
// Plugin test mode works only providing a file containing test file locations, used in "local" mode also
plugin->SetFileForTestMode("files.txt"); // file should contain path name to a local directory containg *ESDs.root etc
// Request connection to alien upon connection to grid
plugin->SetProofConnectGrid(kFALSE);
cout<<"-->>>>>>>>>>>>>>>>>>>>>>>>> 4"<<endl;
return plugin;
cout<<"-->>>>>>>>>>>>>>>>>>>>>>>>> 5"<<endl;
}
//######################################################################################################################################
AliAnalysisAlien* CreateAlienHandler ( const char* gridMode, const char* tag, unsigned int nr_test_files, unsigned int TTL,
const char* outdir, const char subworkdir, const char* extradirlvl ) {
AliAnalysisAlien* plugin = new AliAnalysisAlien();
if ( !plugin ) { std::cout << "!!! -->> alien handler could not be created <<-- !!!" << std::endl; return NULL;}
plugin->AddIncludePath("-I.");
plugin->AddIncludePath("-I$ALICE_PHYSICS/include");
plugin->AddIncludePath("-I$ALICE_ROOT/include");
plugin->AddIncludePath("-I$FASTJET/include");
plugin->AddIncludePath("-I/usr/include");
// unsigned int kGridMaxMergeFiles = 100; // Number of files merged in a chunk grid run range
// unsigned int kMaxInitFailed = 10 ; // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
TString kGridOutdir = outdir ; // AliEn output directory. If blank will become output_<kTrainName>
TString kGridSubWorkDir = subworkdir ; // sub working directory not to confuse different run xmls
TString kGridExtraAliendirLevel = extradirlvl ; // sub working directory not to confuse different run xmls
TString kWorkDir = tag; // AliEn work dir; relative to AliEn $HOME
TString kTrainName = "cdfjets"; // *CHANGE ME* (no blancs or special characters)
TString macroName(""); macroName = Form("%s.C", kTrainName.Data());
TString execName(""); execName = Form("%s.sh", kTrainName.Data());
TString jdlName(""); jdlName = Form("%s.jdl", kTrainName.Data());
// Set run mode. Can be "full", "test", "offline", "submit" or "merge"
plugin->SetRunMode(gridMode);
if (std::strcmp(gridMode, "test")) { plugin->SetCheckCopy(kFALSE); }
// Set the number of test files; set to kGridFilesPerJob as to evaluate the memory consumption and ttl on grid
plugin->SetNtestFiles ( nr_test_files );
// Job tag
plugin->SetJobTag(tag);
// AliEn directory containing the input packages
plugin->SetGridWorkingDir(tag);
// Declare alien output directory. Relative to working directory.
plugin->SetGridOutputDir( kGridOutdir.Data() ); // In this case will be $HOME/work/output
// Optionally modify the executable name (default analysis.sh)
plugin->SetExecutable(execName.Data());
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro(macroName.Data());
// Optionally modify the name of the generated JDL (default analysis.jdl)
plugin->SetJDLName(jdlName.Data());
// Use the output files connected to output containers from the analysis manager
// rather than the files defined by SetOutputFiles
plugin->SetDefaultOutputs(kTRUE);
//******************** PLUGIN OPTIONS ************************
// min (nr,4) replicas in grid storage
plugin->SetNumberOfReplicas(2);
// Optionally set time to live
plugin->SetTTL(TTL);
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
plugin->SetSplitMaxInputFileNumber ( nr_test_files );
// Use xrootd tweaks to reduce timeouts in file access
plugin->SetFastReadOption ( kFALSE );
// Maximum initial consecutive subjobs accepted to fail.
// plugin->SetMaxInitFailed ( kMaxInitFailed );
// Optionally resubmit threshold.
// plugin->SetMasterResubmitThreshold(90);
// Number of runs per masterjob
// plugin->SetNrunsPerMaster(1);
// exit from aliensh after submmiting job
plugin->SetDropToShell ( kTRUE );
// Overwrite existing files if any
plugin->SetOverwriteMode();
// write the output to subdirs named after run number
// plugin->SetOutputToRunNo(1);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// We split per SE or file
plugin->SetSplitMode("se");
// MERGING - Enable merging via automatic JDL
plugin->SetMergeViaJDL(kTRUE);
// Maximum number of files to be merged in one chunk
plugin->SetOneStageMerging(kFALSE);
// Maximum number of merging stages
plugin->SetMaxMergeStages(2);
// Optionally set maximum number of files merged in a chunk (default 100, put 0 to ignore)
// plugin->SetMaxMergeFiles ( kGridMaxMergeFiles );
return plugin;
}
AliAnalysisGrid* CreateAlienHandlerPbPb()
{
// Check if user has a valid token, otherwise make one. This has limitations.
// One can always follow the standard procedure of calling alien-token-init then
// source /tmp/gclient_env_$UID in the current shell.
// if (!AliAnalysisGrid::CreateToken()) return NULL;
AliAnalysisAlien *plugin = new AliAnalysisAlien();
plugin->SetOverwriteMode();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
plugin->SetRunMode("test");
// plugin->SetRunMode("offline");
// plugin->SetRunMode("full");
// plugin->SetRunMode("terminate");
plugin->SetNtestFiles(1);
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
plugin->SetROOTVersion("v5-33-02a");
plugin->SetAliROOTVersion("v5-03-19-AN");
// Declare input data to be processed.
// Method 1: Create automatically XML collections using alien 'find' command.
// Define production directory LFN
// On real reconstructed data:
plugin->SetGridDataDir("/alice/data/2011/LHC11h_2");
// Set data search pattern
plugin->SetDataPattern("*/pass2/*/AliESDs.root");
//same for pp MC:
// plugin->SetGridDataDir("/alice/sim/LHC10f6a");
// plugin->SetDataPattern("*/*/AliESDs.root");
// Data pattern for reconstructed data
// plugin->SetDataPattern("*AliAOD.root"); //esta linea sirve para pruebas
plugin->SetRunPrefix("000"); // real data
// ...then add run numbers to be considered
// plugin->SetRunRange(122374,126437); //sim data
//10d
// plugin->AddRunNumber(126437); //sim data
//11h.pass2
plugin->AddRunNumber(170040);
// plugin->SetOutputSingleFolder("output");
plugin->SetOutputToRunNo();
// Method 2: Declare existing data files (raw collections, xml collections, root file)
// If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
// XML collections added via this method can be combined with the first method if
// the content is compatible (using or not tags)
// plugin->AddDataFile("tag.xml");
// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
// Define alien work directory where all files will be copied. Relative to alien $HOME.
plugin->SetGridWorkingDir("work");
// Declare alien output directory. Relative to working directory.
plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
// Declare the analysis source files names separated by blancs. To be compiled runtime
// using ACLiC on the worker nodes.
// plugin->SetAnalysisSource("AliAnalysisHelperJetTasks.cxx AliAnalysisTaskPartonDisc.cxx");
plugin->AddIncludePath("-I. .I$ALIEN_ROOT/api/lib -I$ROOTSYS/lib -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT/PWGDQ/ -I$ALICE_ROOT/PWGDQ/dielectron/macrosLMEE -I$ALICE_ROOT/PWGDQ/dielectron -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/TENDER/Tender -I$ALICE_ROOT/TENDER/TenderSupplies");
// plugin->SetAdditionalLibs("libGui.so libXMLParser.so libSTEERBase.so libESD.so libAOD.so libCDB.so libANALYSIS.so libANALYSISalice.so libCORRFW.so libTender.so libProof.so libRAWDatabase.so libSTEER.so libTOFbase.so libPWGDQdielectron.so");// ConfigLowMassDiE.C")
plugin->SetAdditionalLibs("libGui.so libXMLParser.so libSTEERBase.so libESD.so libAOD.so libCDB.so libANALYSIS.so libANALYSISalice.so libCORRFW.so libTender.so libProof.so libRAWDatabase.so libSTEER.so libTOFbase.so libPWGDQdielectron.so ConfigLowMassDiE.C");
// Declare all libraries (other than the default ones for the framework. These will be
// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
// plugin->SetAdditionalLibs("AliAnalysisHelperJetTasks.h AliAnalysisHelperJetTasks.cxx AliAnalysisTaskPartonDisc.h AliAnalysisTaskPartonDisc.cxx");
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
// plugin->SetOutputFiles("Output.root");
plugin->SetDefaultOutputs();
//or specify files:
//plugin->SetDefaultOutputs(kFALSE);
//plugin->SetOutputFiles("cbaumann_LMEEpp2010_out.root");
// plugin->SetOutputFiles("cbaumann_lowmass_out.root cbaumann_lowmass_CF.root");
// Optionally define the files to be archived.
// plugin->SetOutputArchive("log_archive.zip:stdout,stderr@disk=2 root_archive.zip:*.root@disk=2");
// plugin->SetOutputArchive("log_archive.zip:stdout,stderr");
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro("DielAnalysis.C");
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
// plugin->SetSplitMaxInputFileNumber(2);
// Optionally modify the executable name (default analysis.sh)
plugin->SetExecutable("DielAnalysis.sh");
plugin->SetExecutableCommand("aliroot -b -q");
// Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
// plugin->SetMaxInitFailed(5);
// Optionally resubmit threshold.
// plugin->SetMasterResubmitThreshold(90);
// Optionally set time to live (default 30000 sec)
plugin->SetTTL(30000);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify the name of the generated JDL (default analysis.jdl)
plugin->SetJDLName("DielAnalysis.jdl");
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// Optionally modify split mode (default 'se')
plugin->SetSplitMode("se");
return plugin;
}
//______________________________________________________________________________
AliAnalysisGrid* CreateAlienHandler(Bool_t bAOD, Int_t bunchN, const char *taskname, const char *gridmode, const char *proofcluster, const char *proofdataset)
{
AliAnalysisAlien *plugin = new AliAnalysisAlien();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
plugin->SetRunMode(gridmode);
// Set versions of used packages
plugin->SetAPIVersion("V1.1x");
plugin->SetROOTVersion("v5-34-08");
plugin->SetAliROOTVersion("v5-05-19-AN");
// Declare input data to be processed.
// Method 1: Create automatically XML collections using alien 'find' command.
// Define production directory LFN
plugin->SetGridDataDir("/alice/data/2010/LHC10h/");
// On real reconstructed data:
// plugin->SetGridDataDir("/alice/data/2009/LHC09d");
// Set data search pattern
//plugin->SetDataPattern("*ESDs.root"); // THIS CHOOSES ALL PASSES
// Data pattern for reconstructed data
if(!bAOD){
plugin->SetDataPattern("*ESDs/pass2/*ESDs.root"); // CHECK LATEST PASS OF DATA SET IN ALIENSH
}
else{
plugin->SetDataPattern("*ESDs/pass2/AOD086/*/AliAOD.root");
}
plugin->SetRunPrefix("000"); // real data
// ...then add run numbers to be considered
//plugin->SetRunRange(114917,115322);
if(bunchN==0){
plugin->AddRunNumber(137366);
}
//bunch1
else if(bunchN == 1){
plugin->AddRunNumber(139510);
plugin->AddRunNumber(139507);
plugin->AddRunNumber(139505);
plugin->AddRunNumber(139503);
plugin->AddRunNumber(139465);
plugin->AddRunNumber(139438);
plugin->AddRunNumber(139437);
plugin->AddRunNumber(139360);
plugin->AddRunNumber(139329);
plugin->AddRunNumber(139328);
}
//bunch2
else if(bunchN == 2){
plugin->AddRunNumber(139314);
plugin->AddRunNumber(139310);
plugin->AddRunNumber(139309);
plugin->AddRunNumber(139173);
plugin->AddRunNumber(139107);
plugin->AddRunNumber(139105);
plugin->AddRunNumber(139038);
plugin->AddRunNumber(139037);
plugin->AddRunNumber(139036);
plugin->AddRunNumber(139029);
plugin->AddRunNumber(139028);
plugin->AddRunNumber(138872);
plugin->AddRunNumber(138871);
plugin->AddRunNumber(138870);
plugin->AddRunNumber(138837);
plugin->AddRunNumber(138732);
plugin->AddRunNumber(138730);
plugin->AddRunNumber(138666);
plugin->AddRunNumber(138662);
plugin->AddRunNumber(138653);
}
else if(bunchN == 3){
plugin->AddRunNumber(138652);
plugin->AddRunNumber(138638);
plugin->AddRunNumber(138624);
plugin->AddRunNumber(138621);
plugin->AddRunNumber(138583);
plugin->AddRunNumber(138582);
plugin->AddRunNumber(138579);
plugin->AddRunNumber(138578);
plugin->AddRunNumber(138534);
plugin->AddRunNumber(138469);
}
else if(bunchN == 4){
plugin->AddRunNumber(138442);
plugin->AddRunNumber(138439);
plugin->AddRunNumber(138438);
plugin->AddRunNumber(138396);
plugin->AddRunNumber(138364);
plugin->AddRunNumber(138275);
plugin->AddRunNumber(138225);
plugin->AddRunNumber(138201);
plugin->AddRunNumber(138197);
plugin->AddRunNumber(138192);
}
else if(bunchN == 5){
plugin->AddRunNumber(138190);
plugin->AddRunNumber(137848);
plugin->AddRunNumber(137844);
plugin->AddRunNumber(137752);
plugin->AddRunNumber(137751);
plugin->AddRunNumber(137724);
plugin->AddRunNumber(137722);
plugin->AddRunNumber(137718);
plugin->AddRunNumber(137704);
plugin->AddRunNumber(137693);
}
else if(bunchN == 6){
plugin->AddRunNumber(137692);
plugin->AddRunNumber(137691);
plugin->AddRunNumber(137686);
plugin->AddRunNumber(137685);
plugin->AddRunNumber(137639);
plugin->AddRunNumber(137638);
plugin->AddRunNumber(137608);
plugin->AddRunNumber(137595);
plugin->AddRunNumber(137549);
plugin->AddRunNumber(137546);
}
else if(bunchN == 7){
plugin->AddRunNumber(137544);
plugin->AddRunNumber(137541);
plugin->AddRunNumber(137539);
plugin->AddRunNumber(137531);
plugin->AddRunNumber(137530);
plugin->AddRunNumber(137443);
plugin->AddRunNumber(137441);
plugin->AddRunNumber(137440);
plugin->AddRunNumber(137439);
plugin->AddRunNumber(137434);
}
else if(bunchN == 8){
plugin->AddRunNumber(137432);
plugin->AddRunNumber(137431);
plugin->AddRunNumber(137430);
plugin->AddRunNumber(137366);
plugin->AddRunNumber(137243);
plugin->AddRunNumber(137236);
plugin->AddRunNumber(137235);
plugin->AddRunNumber(137232);
plugin->AddRunNumber(137231);
plugin->AddRunNumber(137162);
plugin->AddRunNumber(137161);
}
else{
stderr<<"BUNCH NOT THERE"<<endl;
return NULL;
}
//plugin->AddRunList("139510, 139507, 139505, 139503, 139465, 139438, 139437, 139360, 139329, 139328, 139314, 139310, 139309, 139173, 139107, 139105, 139038, 139037, 139036, 139029, 139028, 138872, 138871, 138870, 138837, 138732, 138730, 138666, 138662, 138653, 138652, 138638, 138624, 138621, 138583, 138582, 138579, 138578, 138534, 138469, 138442, 138439, 138438, 138396, 138364, 138275, 138225, 138201, 138197, 138192, 138190, 137848, 137844, 137752, 137751, 137724, 137722, 137718, 137704, 137693, 137692, 137691, 137686, 137685, 137639, 137638, 137608, 137595, 137549, 137546, 137544, 137541, 137539, 137531, 137530, 137443, 137441, 137440, 137439, 137434, 137432, 137431, 137430, 137366, 137243, 137236, 137235, 137232, 137231, 137162, 137161");
plugin->SetNrunsPerMaster(1);
plugin->SetOutputToRunNo();
// comment out the next line when using the "terminate" option, unless
// you want separate merged files for each run
plugin->SetMergeViaJDL();
// Method 2: Declare existing data files (raw collections, xml collections, root file)
// If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
// XML collections added via this method can be combined with the first method if
// the content is compatible (using or not tags)
// plugin->AddDataFile("tag.xml");
// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
// Define alien work directory where all files will be copied. Relative to alien $HOME.
plugin->SetGridWorkingDir(taskname);
// Declare alien output directory. Relative to working directory.
plugin->SetGridOutputDir("out"); // In this case will be $HOME/taskname/out
// Declare the analysis source files names separated by blancs. To be compiled runtime
// using ACLiC on the worker nodes.
plugin->SetAnalysisSource("AliBalance.cxx AliAnalysisTaskBF.cxx");
// Declare all libraries (other than the default ones for the framework. These will be
// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
//plugin->AddIncludePath("-I.");
//plugin->SetAdditionalLibs("libPWGCFebye.so");
plugin->SetAdditionalLibs("AliBalance.cxx AliBalance.h AliAnalysisTaskBF.cxx AliAnalysisTaskBF.h");
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
// To only save certain files, use SetDefaultOutputs(kFALSE), and then
// SetOutputFiles("list.root other.filename") to choose which files to save
plugin->SetDefaultOutputs();
//plugin->SetOutputFiles("list.root");
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro(Form("%s.C",taskname));
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
plugin->SetSplitMaxInputFileNumber(100);
// Optionally modify the executable name (default analysis.sh)
plugin->SetExecutable(Form("%s.sh",taskname));
// set number of test files to use in "test" mode
plugin->SetNtestFiles(1);
// Optionally resubmit threshold.
plugin->SetMasterResubmitThreshold(90);
// Optionally set time to live (default 30000 sec)
plugin->SetTTL(90000);
// Optionally set input format (default xml-single)
plugin->SetInputFormat("xml-single");
// Optionally modify the name of the generated JDL (default analysis.jdl)
plugin->SetJDLName(Form("%s.jdl",taskname));
// Optionally modify job price (default 1)
plugin->SetPrice(1);
// Optionally modify split mode (default 'se')
plugin->SetSplitMode("se");
//plugin->SetUseSubmitPolicy();
//plugin->SetKeepLogs();
//----------------------------------------------------------
//--- PROOF MODE SPECIFIC SETTINGS ------------
//----------------------------------------------------------
// Proof cluster
plugin->SetProofCluster(proofcluster);
// Dataset to be used
plugin->SetProofDataSet(proofdataset);
// May need to reset proof. Supported modes: 0-no reset, 1-soft, 2-hard
plugin->SetProofReset(0);
// May limit number of workers
plugin->SetNproofWorkers(0);
// May limit the number of workers per slave
plugin->SetNproofWorkersPerSlave(1);
// May use a specific version of root installed in proof
plugin->SetRootVersionForProof("current");
// May set the aliroot mode. Check http://aaf.cern.ch/node/83
plugin->SetAliRootMode("default"); // Loads AF libs by default
// May request ClearPackages (individual ClearPackage not supported)
plugin->SetClearPackages(kFALSE);
// Plugin test mode works only providing a file containing test file locations, used in "local" mode also
plugin->SetFileForTestMode("files.txt"); // file should contain path name to a local directory containg *ESDs.root etc
// Request connection to alien upon connection to grid
plugin->SetProofConnectGrid(kFALSE);
plugin->Print();
return plugin;
}
AliAnalysisGrid* CreateAlienHandler(const char* mode = "offline")
{
//if (!AliAnalysisGrid::CreateToken()) return NULL;
AliAnalysisAlien *plugin = new AliAnalysisAlien();
plugin->SetRunMode(mode); // "full", "test", "offline", "submit" or "terminate"
plugin->SetMergeViaJDL(kTRUE);
plugin->SetOneStageMerging(kFALSE);
plugin->SetMaxMergeStages(2);
plugin->SetAPIVersion("V1.1x");
plugin->SetROOTVersion("v5-30-03");
plugin->SetAliROOTVersion("v5-02-16-AN");
// add data through aliensh find procedure.
//plugin->SetGridDataDir("/alice/sim/LHC11d2/");
plugin->SetGridDataDir("/alice/data/2011/LHC11e");
//plugin->SetDataPattern("*pass1/*ESDs.root");
//plugin->SetDataPattern("*tag.root");
//plugin->SetDataPattern("*pass1/*tag.root");
plugin->SetDataPattern("*AOD.root");
//plugin->AddRunNumber(119161);
//plugin->AddRunNumber("000162740");
//plugin->AddRunNumber("000161585");
plugin->AddRunNumber("000162644");
// Method 2: Declare existing data files
//plugin->AddDataFile("tag.xml");
// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
plugin->SetGridWorkingDir("eta");
plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
// TString source = "";
// source += "EtaCandidate.cxx ";
// source += "EtaPriCandidate.cxx ";
// source += "EtaConfig.cxx ";
// source += "EtaOutput.cxx ";
// source += "EtaAnalysis.cxx ";
// source += "EtaTask.cxx ";
// plugin->SetAnalysisSource(source);
plugin->SetAnalysisSource("EtaCandidate.cxx EtaPriCandidate.cxx EtaConfig.cxx EtaOutput.cxx EtaAnalysis.cxx EtaTask.cxx");
// TString libs = source;
// libs += "EtaCandidate.h ";
// libs += " EtaPriCandidate.h";
// libs += " EtaConfig.h";
// libs += " EtaOutput.h";
// libs += " EtaAnalysis.h";
// libs += " EtaTask.h";
// plugin->SetAdditionalLibs(libs);
plugin->SetAdditionalLibs("EtaCandidate.h EtaCandidate.cxx EtaPriCandidate.h EtaPriCandidate.cxx EtaConfig.h EtaConfig.cxx EtaOutput.h EtaOutput.cxx EtaAnalysis.h EtaAnalysis.cxx EtaTask.h EtaTask.cxx");
plugin->SetDefaultOutputs(kTRUE);
//plugin->SetDefaultOutputs(kFALSE);
//plugin->SetOutputFiles("eta.output.ESD.root EventStat_temp.root");
// Optionally define the files to be archived.
// plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:*.root@ALICE::NIHAM::File");
// plugin->SetOutputArchive("log_archive.zip:stdout,stderr");
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
plugin->SetAnalysisMacro("EtaAnalysis.C");
plugin->SetExecutable("runEtaAnalysis.sh");
plugin->SetJDLName("EtaAnalysis.jdl");
plugin->SetSplitMaxInputFileNumber(100);
plugin->SetMaxInitFailed(5);
plugin->SetMasterResubmitThreshold(90);
plugin->SetTTL(43200);
plugin->SetInputFormat("xml-single");
plugin->SetPrice(1);
plugin->SetSplitMode("se");
return plugin;
}