void __create_symlink(path const & from, path const & to, std::error_code *ec) {
if (::symlink(from.c_str(), to.c_str()) == -1)
set_or_throw(ec, "create_symlink", from, to);
else if (ec)
ec->clear();
}
ConfigParser::ConfigParser(const path & configFile) :
m_configFilePath(configFile)
{
ifstream fin(configFile.c_str());
string configBuffer;
string buff;
if (fin.is_open())
{
while (fin.good())
{
getline(fin, buff);
// if this isn't just an empty line or a comment
if (buff[0] != '\0' && buff[0] != '#')
configBuffer += buff + '\n';
}
}
else
{
string errMsg = "Cannot read configuration file \"";
errMsg += configFile.c_str();
errMsg += '\"';
LogManager::getInstancePtr()->log(errMsg, LogManager::L_ERROR);
throw FSException(errMsg, __FILE__, __LINE__);
}
fin.close();
m_fsyncHomePath = getFsyncHomePath();
generatePairs(configBuffer);
}
//------------------------------------------------------------------------------
void FileCopier::copy (path const& srcpath, path const& dstpath, path const& dsppath) {
// declare variables
long unsigned buf_count = 0;
long unsigned buf_trigger = bufs_per_update;
FileSize initialBytes = status.bytes;
// update status
status.fileTotal = file_size(srcpath);
status.srcPath = srcpath;
status.dstPath = dstpath;
status.dspPath = dsppath;
// open files
ifstream src(srcpath.c_str());
ofstream dst;
if (!safe_mode) dst.open(dstpath.c_str(), ios_base::out | ios_base::binary);
printStart(status);
while (src) {
if (buf_count++ == buf_trigger) {
buf_trigger += bufs_per_update;
FileSize newbytes = bufs_per_update * BUFSIZ;
status.bytes += newbytes;
status.fileBytes += newbytes;
printUpdate(status);
}
src.read(buf, BUFSIZ);
if (!safe_mode) dst.write(buf, src.gcount());
}
src.close();
if (!safe_mode) dst.close();
status.bytes = initialBytes + status.fileTotal;
}
void rename(const path& from, const path& to, std::error_code& ec) noexcept
{
if (::rename(from.c_str(), to.c_str())) {
ec = {errno, std::system_category()};
} else {
ec.clear();
}
}
void __last_write_time(const path& p, file_time_type new_time,
std::error_code *ec)
{
using namespace std::chrono;
std::error_code m_ec;
// We can use the presence of UTIME_OMIT to detect platforms that do not
// provide utimensat.
#if !defined(UTIME_OMIT)
// This implementation has a race condition between determining the
// last access time and attempting to set it to the same value using
// ::utimes
struct ::stat st;
file_status fst = detail::posix_stat(p, st, &m_ec);
if (m_ec && !status_known(fst)) {
set_or_throw(m_ec, ec, "last_write_time", p);
return;
}
struct ::timeval tbuf[2];
tbuf[0].tv_sec = st.st_atime;
tbuf[0].tv_usec = 0;
const bool overflowed = !detail::set_times_checked<microseconds>(
&tbuf[1].tv_sec, &tbuf[1].tv_usec, new_time);
if (overflowed) {
set_or_throw(make_error_code(errc::invalid_argument), ec,
"last_write_time", p);
return;
}
if (::utimes(p.c_str(), tbuf) == -1) {
m_ec = detail::capture_errno();
}
#else
struct ::timespec tbuf[2];
tbuf[0].tv_sec = 0;
tbuf[0].tv_nsec = UTIME_OMIT;
const bool overflowed = !detail::set_times_checked<nanoseconds>(
&tbuf[1].tv_sec, &tbuf[1].tv_nsec, new_time);
if (overflowed) {
set_or_throw(make_error_code(errc::invalid_argument),
ec, "last_write_time", p);
return;
}
if (::utimensat(AT_FDCWD, p.c_str(), tbuf, 0) == -1) {
m_ec = detail::capture_errno();
}
#endif
if (m_ec)
set_or_throw(m_ec, ec, "last_write_time", p);
else if (ec)
ec->clear();
}
//------------------------------------------------------------------------------
void rename(const path &op, const path &np)
{
const int r = ::rename(op.c_str(), np.c_str());
if(r != 0)
{
n_throw(system::system_error)
<< ei_msg_c("rename() failed.")
<< ei_path(op)
<< system::ei_error_code(system::error_code(
errno, system::system_category()));
}
}
bool equivalent(const path& p1, const path& p2, std::error_code& ec) noexcept
{
struct stat st1;
struct stat st2;
if (::stat(p1.c_str(), &st1) || ::stat(p2.c_str(), &st2)) {
ec = {errno, std::system_category()};
return false;
} else {
ec.clear();
return st1.st_dev == st2.st_dev && st1.st_ino == st2.st_ino;
}
}
void __last_write_time(const path& p, file_time_type new_time,
std::error_code *ec)
{
using namespace std::chrono;
std::error_code m_ec;
#if !defined(_LIBCXX_USE_UTIMENSAT)
// This implementation has a race condition between determining the
// last access time and attempting to set it to the same value using
// ::utimes
struct ::stat st;
file_status fst = detail::posix_stat(p, st, &m_ec);
if (m_ec && !status_known(fst)) {
set_or_throw(m_ec, ec, "last_write_time", p);
return;
}
auto atime = detail::extract_atime(st);
struct ::timeval tbuf[2];
tbuf[0].tv_sec = atime.tv_sec;
tbuf[0].tv_usec = duration_cast<microseconds>(nanoseconds(atime.tv_nsec)).count();
const bool overflowed = !FSTime::set_times_checked<microseconds>(
&tbuf[1].tv_sec, &tbuf[1].tv_usec, new_time);
if (overflowed) {
set_or_throw(make_error_code(errc::invalid_argument), ec,
"last_write_time", p);
return;
}
if (::utimes(p.c_str(), tbuf) == -1) {
m_ec = detail::capture_errno();
}
#else
struct ::timespec tbuf[2];
tbuf[0].tv_sec = 0;
tbuf[0].tv_nsec = UTIME_OMIT;
const bool overflowed = !FSTime::set_times_checked<nanoseconds>(
&tbuf[1].tv_sec, &tbuf[1].tv_nsec, new_time);
if (overflowed) {
set_or_throw(make_error_code(errc::invalid_argument),
ec, "last_write_time", p);
return;
}
if (::utimensat(AT_FDCWD, p.c_str(), tbuf, 0) == -1) {
m_ec = detail::capture_errno();
}
#endif
if (m_ec)
set_or_throw(m_ec, ec, "last_write_time", p);
else if (ec)
ec->clear();
}
bool filesys::create_directory(const path & p)
{
/*
*/
# if OS_WINDOWS
return CreateDirectory(p.c_str(), 0) != 0;
# elif OS_LINUX
int32 stat = mkdir(p.c_str(), 777);
return stat != 0;
# else
# endif
return false;
}
filesys::DirectoryIterator::DirectoryIterator(const path & p, const path& filter /* = "*.*"*/) :
hdl(nullptr),
i(0), n(0),
current(""), basePath("")
{
/*
WIN32_FIND_DATA ffd;
path p2 = filesys::concat(p, filter);
basePath = p;
hdl = FindFirstFile(p2.c_str(), &ffd);
if (hdl == INVALID_HANDLE_VALUE)
hdl = nullptr;
current = filesys::concat(basePath,path(ffd.cFileName));
if (path(ffd.cFileName) == "." || path(ffd.cFileName) == "..")
operator ++();
*/
# if OS_WINDOWS || OS_LINUX
basePath = p;
i = 0;
struct dirent **nameList = nullptr;
n = scandir(p.c_str(),&nameList,filter_dirEntry, alphasort);
if(n <= 0) {
hdl = nullptr;
n = 0;
return;
}
hdl = (void*)nameList;
current = filesys::concat(basePath,filesys::path(nameList[i]->d_name));
free(nameList[i++]);
# else
# endif
}
HashTable<string,std::vector<string> > read_configuration_file(const path cfg_path)
{
assert(is_regular_file(cfg_path));
auto hash_table=HashTable<std::string,std::vector<std::string>>();
std::ifstream cfg_file(cfg_path.c_str());
std::string line;
std::vector<std::string> parts;
while ( std::getline(cfg_file,line) )
{
split( parts,line,boost::is_any_of("=") );
switch (parts.size())
{
case 0 :
throw std::string("Malformed configuration file : "+line);
break;
case 1 : // probably empty line
break;
case 2 :
std::string key=parts[0];
std::string value=parts[1];
if (!hash_table.isKey(key))
{
hash_table[key]=std::vector<std::string>();
}
hash_table[key].push_back(value);
break;
}
}
return hash_table;
}
OPENPSTD_SHARED_EXPORT void PSTDFileAccess::Open(path filename)
{
boost::unique_lock<boost::recursive_mutex> m_lock(*this->mutex);
this->realPath = path(filename.c_str());
this->d = PSTDFile::Open(this->realPath);
this->Change();
}
/**
* Finds a particular fasta header in a fasta file and returns the associated sequence
**/
static int getEntryFromFasta(const path& fasta_path, const string& header, string& sequence)
{
// Setup stream to sequence file and check all is well
std::ifstream inputStream (fasta_path.c_str());
if (!inputStream.is_open())
{
std::cerr << "ERROR: Could not open the sequence file: " << fasta_path << endl;
return 0;
}
string id;
string seq;
// Read a record
while(inputStream.good() && readRecord(inputStream, id, seq) == 0)
{
stringstream ssHeader;
ssHeader << id;
if (header.compare(ssHeader.str()) == 0)
{
inputStream.close();
sequence = seq;
return 0;
}
seq.clear();
}
inputStream.close();
return -1;
}
/**
* Finds the nth entry from the fasta file and returns the associated sequence
**/
static int getEntryFromFasta(const path& fasta_path, uint32_t n, string& header, string& sequence)
{
// Setup stream to sequence file and check all is well
std::ifstream inputStream (fasta_path.c_str());
if (!inputStream.is_open())
{
std::cerr << "ERROR: Could not open the sequence file: " << fasta_path << endl;
return 0;
}
std::string id;
std::string seq;
uint32_t i = 1;
// Read a record
while(inputStream.good() && readRecord(inputStream, id, seq) == 0)
{
if (i == n)
{
inputStream.close();
header.swap(id);
sequence = seq;
return 0;
}
seq.clear();
i++;
}
inputStream.close();
return -1;
}
path absolute(const path& filename)
{
if ( !filename.empty() )
{
#if (( defined( _POSIX_VERSION ) && _POSIX_VERSION >= 200809l ) || defined( __GLIBC__ ))
// Preferred - POSIX-2008 and glibc will allocate the path buffer
char* res = ::realpath(filename.c_str(), NULL);
if ( res )
{
path s = res;
::free(res);
return s;
}
#else
#ifdef _GNU_SOURCE
// Maybe we can rely on the GNU extension
char* res = ::canonicalize_file_name( filename.c_str() );
if ( res )
{
std::string s = res;
::free(res);
return s;
}
#elif ((( defined( _POSIX_VERSION ) && _POSIX_VERSION >= 200112L ) || ( defined( _XOPEN_VERSION ) && _XOPEN_VERSION >= 500 )) && defined( PATH_MAX ))
/// @todo PATH_MAX may be huge or -1, according to man pages for realpath
char resolved[PATH_MAX + 1];
char* res = ::realpath(filename.c_str(), resolved);
if ( res )
{
return resolved;
}
#else
#error "No way to get absolute file path!"
#endif // if 1
#endif // if ( defined( _POSIX_VERSION ) && _POSIX_VERSION >= 200809l )
}
return path();
}
void resize_file(const path& p, uintmax_t size, std::error_code& ec) noexcept
{
if (::truncate(p.c_str(), static_cast<off_t>(size))) {
ec = {errno, std::system_category()};
} else {
ec.clear();
}
}
bool __remove(const path& p, std::error_code *ec) {
if (ec) ec->clear();
if (::remove(p.c_str()) == -1) {
set_or_throw(ec, "remove", p);
return false;
}
return true;
}
void current_path(const path& p, std::error_code& ec) noexcept
{
if (chdir(p.c_str()) == 0) {
ec = {errno, std::system_category()};
} else {
ec.clear();
}
}
std::string ShortName(path const& p) {
std::wstring out(MAX_PATH + 1, 0);
DWORD len = GetShortPathName(p.c_str(), &out[0], out.size());
if (!len)
return p.string();
out.resize(len);
return ConvertLocal(out);
}
bool filesys::exists(const path & p)
{
# if OS_WINDOWS || OS_LINUX
struct stat buffer;
return stat(p.c_str(), &buffer) == 0;
# else
return false;
# endif
}
// ----------------------------------------------------------------------------
path Editor::toRelative(path p)
{
stringc path = p.c_str();
s32 ix = path.findLast('/');
if (ix == -1) return p;
stringc ret = path.subString(ix+1, path.size() - ix);
return ret;
} // toRelative
/// Removes a file.
///
/// \param file The file to remove.
///
/// \throw fs::system_error If the call to unlink(2) fails.
void
fs::unlink(const path& file)
{
if (::unlink(file.c_str()) == -1) {
const int original_errno = errno;
throw fs::system_error(F("Removal of %s failed") % file,
original_errno);
}
}
bool __create_directory(const path& p, std::error_code *ec)
{
if (ec) ec->clear();
if (::mkdir(p.c_str(), static_cast<int>(perms::all)) == 0)
return true;
if (errno != EEXIST || !is_directory(p))
set_or_throw(ec, "create_directory", p);
return false;
}
struct stat lstat(path p, std::error_code& ec)
{
struct stat st;
if (::lstat(p.c_str(), &st) != 0) {
ec = {errno, std::system_category()};
} else {
ec.clear();
}
return st;
}
bool create_directory(const path& p, std::error_code& ec) noexcept
{
auto error = mkdir(p.c_str(), static_cast<int>(perms::all));
if (error && !is_directory(p)) {
ec = {errno, std::system_category()};
} else {
ec.clear();
}
return !error;
}
BackgroundImageContents::BackgroundImageContents(path filename, GError** error)
{
XOJ_INIT_TYPE(BackgroundImageContents);
this->filename = filename;
this->ref = 1;
this->pageId = -1;
this->attach = false;
this->pixbuf = gdk_pixbuf_new_from_file(filename.c_str(), error);
}
path canonical(const path& p, std::error_code& ec)
{
char tmp[PATH_MAX];
if (realpath(p.c_str(), tmp) == nullptr) {
ec = {errno, std::system_category()};
} else {
ec.clear();
}
return path(tmp);
}
void directory_iterator::open_dir(const path &p, error_code &ec) noexcept {
DIR *dp = opendir(p.c_str());
if (!dp)
{
ec = error_code(errno, std::system_category());
return;
}
_imp = std::make_shared<imp>(p, dp);
}
bool remove(const path& p, std::error_code& ec) noexcept
{
if (!exists(p, ec)) return false;
if (::remove(p.c_str())) {
ec = {errno, std::system_category()};
return false;
} else {
ec.clear();
return true;
}
}
void __permissions(const path& p, perms prms, std::error_code *ec)
{
const bool resolve_symlinks = !bool(perms::symlink_nofollow & prms);
const bool add_perms = bool(perms::add_perms & prms);
const bool remove_perms = bool(perms::remove_perms & prms);
_LIBCPP_ASSERT(!(add_perms && remove_perms),
"Both add_perms and remove_perms are set");
bool set_sym_perms = false;
prms &= perms::mask;
if (!resolve_symlinks || (add_perms || remove_perms)) {
std::error_code m_ec;
file_status st = resolve_symlinks ? detail::posix_stat(p, &m_ec)
: detail::posix_lstat(p, &m_ec);
set_sym_perms = is_symlink(st);
if (m_ec) return set_or_throw(m_ec, ec, "permissions", p);
_LIBCPP_ASSERT(st.permissions() != perms::unknown,
"Permissions unexpectedly unknown");
if (add_perms)
prms |= st.permissions();
else if (remove_perms)
prms = st.permissions() & ~prms;
}
const auto real_perms = detail::posix_convert_perms(prms);
# if defined(AT_SYMLINK_NOFOLLOW) && defined(AT_FDCWD)
const int flags = set_sym_perms ? AT_SYMLINK_NOFOLLOW : 0;
if (::fchmodat(AT_FDCWD, p.c_str(), real_perms, flags) == -1) {
return set_or_throw(ec, "permissions", p);
}
# else
if (set_sym_perms)
return set_or_throw(make_error_code(errc::operation_not_supported),
ec, "permissions", p);
if (::chmod(p.c_str(), real_perms) == -1) {
return set_or_throw(ec, "permissions", p);
}
# endif
if (ec) ec->clear();
}