예제 #1
0
void FakeMDEventData::addFakeUniformData(
    typename MDEventWorkspace<MDE, nd>::sptr ws) {
  std::vector<double> params = getProperty("UniformParams");
  if (params.empty())
    return;

  bool randomEvents = true;
  if (params[0] < 0) {
    randomEvents = false;
    params[0] = -params[0];
  }

  if (params.size() == 1) {
    if (randomEvents) {
      for (size_t d = 0; d < nd; ++d) {
        params.push_back(ws->getDimension(d)->getMinimum());
        params.push_back(ws->getDimension(d)->getMaximum());
      }
    } else // regular events
    {
      size_t nPoints = size_t(params[0]);
      double Vol = 1;
      for (size_t d = 0; d < nd; ++d)
        Vol *= (ws->getDimension(d)->getMaximum() -
                ws->getDimension(d)->getMinimum());

      if (Vol == 0 || Vol > std::numeric_limits<float>::max())
        throw std::invalid_argument(
            " Domain ranges are not defined properly for workspace: " +
            ws->getName());

      double dV = Vol / double(nPoints);
      double delta0 = std::pow(dV, 1. / double(nd));
      for (size_t d = 0; d < nd; ++d) {
        double min = ws->getDimension(d)->getMinimum();
        params.push_back(min * (1 + FLT_EPSILON) - min + FLT_EPSILON);
        double extent = ws->getDimension(d)->getMaximum() - min;
        size_t nStrides = size_t(extent / delta0);
        if (nStrides < 1)
          nStrides = 1;
        params.push_back(extent / static_cast<double>(nStrides));
      }
    }
  }
  if ((params.size() != 1 + nd * 2))
    throw std::invalid_argument(
        "UniformParams: needs to have ndims*2+1 arguments ");

  if (randomEvents)
    addFakeRandomData<MDE, nd>(params, ws);
  else
    addFakeRegularData<MDE, nd>(params, ws);

  ws->splitBox();
  Kernel::ThreadScheduler *ts = new ThreadSchedulerFIFO();
  ThreadPool tp(ts);
  ws->splitAllIfNeeded(ts);
  tp.joinAll();
  ws->refreshCache();
}
예제 #2
0
  void vtkSplatterPlotFactory::doCreate(typename MDEventWorkspace<MDE, nd>::sptr ws) const
  {
    bool VERBOSE = true;
    CPUTimer tim;
    // Acquire a scoped read-only lock to the workspace (prevent segfault
    // from algos modifying ws)
    ReadLock lock(*ws);

    // Find out how many events to plot, and the percentage of the largest
    // boxes to use.
    size_t totalPoints = ws->getNPoints();
    size_t numPoints = m_numPoints;

    if (numPoints > totalPoints)
    {
      numPoints = totalPoints;
    }

    double percent_to_use = m_percentToUse;
    // Fail safe limits on fraction of boxes to use
    if (percent_to_use <= 0)
    {
      percent_to_use = 5;
    }

    if (percent_to_use > 100)
    {
      percent_to_use = 100;
    }

    // First we get all the boxes, up to the given depth; with or wo the
    // slice function
    std::vector<API::IMDNode *> boxes;
    if (this->slice)
    {
      ws->getBox()->getBoxes(boxes, 1000, true, this->sliceImplicitFunction);
    }
    else
    {
      ws->getBox()->getBoxes(boxes, 1000, true);
    }

    if (VERBOSE)
    {
      std::cout << tim << " to retrieve the "<< boxes.size() << " boxes down."<< std::endl;
    }

    std::string new_name = ws->getName();
    if (new_name != m_wsName || m_buildSortedList)
    {
      m_wsName = new_name;
      m_buildSortedList = false;
      m_sortedBoxes.clear();
      // get list of boxes with signal > 0 and sort
      // the list in order of decreasing signal
      for (size_t i = 0; i < boxes.size(); i++)
      {
        MDBox<MDE,nd> * box = dynamic_cast<MDBox<MDE,nd> *>(boxes[i]);
        if (box)
        {
          size_t newPoints = box->getNPoints();
          if (newPoints > 0)
          {
            m_sortedBoxes.push_back(box);
          }
        }
      }

      if (VERBOSE)
      {
        std::cout << "START SORTING" << std::endl;
      }
      std::sort(m_sortedBoxes.begin(), m_sortedBoxes.end(),
                CompareNormalizedSignal);
      if (VERBOSE)
      {
        std::cout << "DONE SORTING" << std::endl;
      }
    }
    size_t num_boxes_to_use = static_cast<size_t>(percent_to_use * static_cast<double>(m_sortedBoxes.size()) / 100.0);
    if (num_boxes_to_use >= m_sortedBoxes.size())
    {
      num_boxes_to_use = m_sortedBoxes.size()-1;
    }

    // restrict the number of points to the
    // number of points in boxes being used
    size_t total_points_available = 0;
    for (size_t i = 0; i < num_boxes_to_use; i++)
    {
      size_t newPoints = m_sortedBoxes[i]->getNPoints();
      total_points_available += newPoints;
    }

    if (numPoints > total_points_available)
    {
      numPoints = total_points_available;
    }

    size_t points_per_box = 0;
    // calculate the average number of points to use per box
    if (num_boxes_to_use > 0)
    {
      points_per_box = numPoints / num_boxes_to_use;
    }

    if (points_per_box < 1)
    {
      points_per_box = 1;
    }

    if (VERBOSE)
    {
      std::cout << "numPoints                 = " << numPoints << std::endl;
      std::cout << "num boxes in all          = " << boxes.size() << std::endl;
      std::cout << "num boxes above zero      = " << m_sortedBoxes.size() << std::endl;
      std::cout << "num boxes to use          = " << num_boxes_to_use << std::endl;
      std::cout << "total_points_available    = " << total_points_available << std::endl;
      std::cout << "points needed per box     = " << points_per_box << std::endl;
    }

    // First save the events and signals that we actually use.
    // For each box, get up to the average number of points
    // we want from each box, limited by the number of points
    // in the box.  NOTE: since boxes have different numbers
    // of events, we will not get all the events requested.
    // Also, if we are using a smaller number of points, we
    // won't get points from some of the boxes with lower signal.

    std::vector<float>            saved_signals;
    std::vector<const coord_t*>   saved_centers;
    std::vector<size_t>           saved_n_points_in_cell;
    saved_signals.reserve(numPoints);
    saved_centers.reserve(numPoints);
    saved_n_points_in_cell.reserve(numPoints);
  
    size_t pointIndex = 0;
    size_t box_index  = 0;
    bool   done       = false;
    while (box_index < num_boxes_to_use && !done)
    {
      MDBox<MDE,nd> *box = dynamic_cast<MDBox<MDE,nd> *>(m_sortedBoxes[box_index]);
      box_index++;
      if (NULL == box)
      {
        continue;
      }
      float signal_normalized = static_cast<float>(box->getSignalNormalized());
      size_t newPoints = box->getNPoints();
      size_t num_from_this_box = points_per_box;
      if (num_from_this_box > newPoints)
      {
        num_from_this_box = newPoints;
      }
      const std::vector<MDE> & events = box->getConstEvents();
      size_t startPointIndex = pointIndex;
      size_t event_index = 0;
      while (event_index < num_from_this_box && !done)
      {
        const MDE & ev = events[event_index];
        event_index++;
        const coord_t * center = ev.getCenter();
        // Save location
        saved_centers.push_back(center);
        pointIndex++;
        if (pointIndex >= numPoints)
        {
          done = true;
        }
      }
      box->releaseEvents();
      // Save signal
      saved_signals.push_back(signal_normalized);
      // Save cell size
      saved_n_points_in_cell.push_back(pointIndex-startPointIndex);
    } 

    numPoints = saved_centers.size();
    size_t numCells = saved_signals.size();

    if (VERBOSE)
    {
      std::cout << "Recorded data for all points" << std::endl;
      std::cout << "numPoints = " << numPoints << std::endl;
      std::cout << "numCells  = " << numCells << std::endl;
    }

    // Create the point list, one position for each point actually used
    vtkPoints *points = vtkPoints::New();
    points->Allocate(numPoints);
    points->SetNumberOfPoints(numPoints);

    // The list of IDs of points used, one ID per point, since points
    // are not reused to form polygon facets, etc.
    vtkIdType *ids = new vtkIdType[numPoints];

    // Only one scalar for each cell, NOT one per point
    vtkFloatArray *signal = vtkFloatArray::New();
    signal->Allocate(numCells);
    signal->SetName(m_scalarName.c_str());

    // Create the data set.  Need space for each cell, not for each point
    vtkUnstructuredGrid *visualDataSet = vtkUnstructuredGrid::New();
    this->dataSet = visualDataSet;
    visualDataSet->Allocate(numCells);
    // Now copy the saved point, cell and signal info into vtk data structures
    pointIndex = 0;
    for (size_t cell_i = 0; cell_i < numCells; cell_i++)
    {
      size_t startPointIndex = pointIndex;
      for (size_t point_i = 0; point_i < saved_n_points_in_cell[cell_i]; point_i++)
      {
        points->SetPoint(pointIndex, saved_centers[pointIndex]);
        ids[pointIndex] = pointIndex;
        pointIndex++;
      }
      signal->InsertNextTuple1(saved_signals[cell_i]);
      visualDataSet->InsertNextCell(VTK_POLY_VERTEX, saved_n_points_in_cell[cell_i], ids+startPointIndex);
    }

    if (VERBOSE)
    {
      std::cout << tim << " to create " << pointIndex << " points." << std::endl;
    }

    // Shrink to fit
    //points->Squeeze();
    signal->Squeeze();
    visualDataSet->Squeeze();

    // Add points and scalars
    visualDataSet->SetPoints(points);
    visualDataSet->GetCellData()->SetScalars(signal);

    delete [] ids;
  }