static int gCmpTrackHierarchy(const void *va, const void *vb)
/* Compare tracks based on longLabel. */
{
const struct slRef *aa = *((struct slRef **)va);
const struct slRef *bb = *((struct slRef **)vb);
const struct track *a = ((struct track *) aa->val);
const struct track *b = ((struct track *) bb->val);
if ( tdbIsFolder(a->tdb) && !tdbIsFolder(b->tdb))
return -1;
else if (!tdbIsFolder(a->tdb) && tdbIsFolder(b->tdb))
return 1;
if ( tdbIsContainer(a->tdb) && !tdbIsContainer(b->tdb))
return -1;
else if (!tdbIsContainer(a->tdb) && tdbIsContainer(b->tdb))
return 1;
if (!tdbIsContainerChild(a->tdb) && tdbIsContainerChild(b->tdb))
return -1;
else if ( tdbIsContainerChild(a->tdb) && !tdbIsContainerChild(b->tdb))
return 1;
return strcasecmp(a->longLabel, b->longLabel);
}
static void displayFoundTracks(struct cart *cart, struct slRef *tracks, int tracksFound,enum sortBy sortBy)
// Routine for displaying found tracks
{
hPrintf("<div id='found' style='display:none;'>\n"); // This div allows the clear button to empty it
if(tracksFound < 1)
{
hPrintf("<p>No tracks found</p>\n");
}
else
{
struct hash *tdbHash = makeTrackHash(database, chromName);
hPrintf("<form action='%s' name='%s' id='%s' method='post'>\n\n", hgTracksName(),SEARCH_RESULTS_FORM,SEARCH_RESULTS_FORM);
cartSaveSession(cart); // Creates hidden var of hgsid to avoid bad voodoo
int startFrom = 0;
hPrintf("<table id='foundTracks'>\n");
// Opening view in browser button and foundTracks count
#define ENOUGH_FOUND_TRACKS 10
if(tracksFound >= ENOUGH_FOUND_TRACKS)
{
hPrintf("<tr><td nowrap colspan=3>\n");
hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='return to browser' class='viewBtn' style='font-size:.8em;'>");
hPrintf(" <FONT class='selCbCount'></font>\n");
startFrom = cartUsualInt(cart,TRACK_SEARCH_PAGER,0);
if (startFrom > 0 && startFrom < tracksFound)
{
int countUp = 0;
for(countUp=0; countUp < startFrom;countUp++)
{
if (slPopHead(&tracks) == NULL) // memory waste
break;
}
}
hPrintf("</td><td align='right' valign='bottom'>\n");
findTracksPageLinks(tracksFound,startFrom);
hPrintf("</td></tr>\n");
}
// Begin foundTracks table
//hPrintf("<table id='foundTracks'><tr><td colspan='2'>\n");
hPrintf("<tr><td colspan='2'>\n");
hPrintf("</td><td align='right'>\n");
#define PM_BUTTON "<IMG height=18 width=18 onclick=\"return findTracksCheckAllWithWait(%s);\" id='btn_%s' src='../images/%s' title='%s all found tracks'>"
hPrintf("</td></tr><tr bgcolor='#%s'><td>",HG_COL_HEADER);
hPrintf(PM_BUTTON,"true", "plus_all", "add_sm.gif", "Select");
hPrintf(PM_BUTTON,"false","minus_all","remove_sm.gif","Unselect");
hPrintf("</td><td><b>Visibility</b></td><td colspan=2> <b>Track Name</b>\n");
// Sort options?
if(tracksFound >= ENOUGH_FOUND_TRACKS)
{
hPrintf("<span style='float:right;'>Sort:");
cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "0", (sortBy == sbRelevance),"onchange=\"findTracksSortNow(this);\"");
hPrintf("by Relevance");
cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "1", (sortBy == sbAbc), "onchange=\"findTracksSortNow(this);\"");
hPrintf("Alphabetically");
cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "2",(sortBy == sbHierarchy), "onchange=\"findTracksSortNow(this);\"");
hPrintf("by Hierarchy </span>\n");
}
hPrintf("</td></tr>\n");
// Set up json for js functionality
struct dyString *jsonTdbVars = NULL;
int trackCount=0;
boolean containerTrackCount = 0;
struct slRef *ptr;
while((ptr = slPopHead(&tracks)))
{
if(++trackCount > MAX_FOUND_TRACKS)
break;
struct track *track = (struct track *) ptr->val;
jsonTdbSettingsBuild(&jsonTdbVars, track, FALSE); // FALSE: No configuration from track search
if (tdbIsFolder(track->tdb)) // supertrack
hPrintf("<tr bgcolor='%s' valign='top' class='found'>\n","#EED5B7");//"#DEB887");//"#E6B426");//#FCECC0//COLOR_LTGREY);//COLOR_LTGREEN);//COLOR_TRACKLIST_LEVEL1);
else if (tdbIsContainer(track->tdb))
hPrintf("<tr bgcolor='%s' valign='top' class='found'>\n",COLOR_TRACKLIST_LEVEL3);
else
hPrintf("<tr bgcolor='%s' valign='top' class='found'>\n",COLOR_TRACKLIST_LEVEL2);
hPrintf("<td align='center'>\n");
// Determine visibility and checked state
track->visibility = tdbVisLimitedByAncestors(cart, track->tdb, TRUE, TRUE);
boolean checked = ( track->visibility != tvHide );
if(tdbIsContainerChild(track->tdb))
{
checked = fourStateVisible(subtrackFourStateChecked(track->tdb,cart)); // Don't need all 4 states here. Visible=checked&&enabled
checked = (checked && ( track->visibility != tvHide )); // Checked is only if subtrack level vis is also set!
}
// Setup the check box
#define CB_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s_sel' VALUE='%s'>"
if (tdbIsContainerChild(track->tdb) || tdbIsFolderContent(track->tdb)) // subtracks and folder children get "_sel" var. ("_sel" var is temporary on folder children)
hPrintf(CB_HIDDEN_VAR,track->track,checked?"1":CART_VAR_EMPTY);
#define CB_SEEN "<INPUT TYPE=CHECKBOX id='%s_sel_id' VALUE='on' class='selCb' onclick='findTracksClickedOne(this,true);'%s>"
hPrintf(CB_SEEN,track->track,(checked?" CHECKED":""));
hPrintf("</td><td>\n");
// Setup the visibility drop down
#define VIS_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s' VALUE='%s'>"
hPrintf(VIS_HIDDEN_VAR,track->track,CART_VAR_EMPTY); // All tracks get vis hidden var
char extra[512];
if (tdbIsFolder(track->tdb))
{
safef(extra,sizeof(extra),"id='%s_id' onchange='findTracksChangeVis(this)'",track->track);
hideShowDropDownWithClassAndExtra(track->track, (track->visibility != tvHide), "normalText visDD",extra);
}
else
{
safef(extra,sizeof(extra),"id='%s_id' onchange='findTracksChangeVis(this)'",track->track);
hTvDropDownClassWithJavascript(NULL, track->visibility,track->canPack,"normalText seenVis",extra);
}
// If this is a container track, allow configuring...
if (tdbIsContainer(track->tdb) || tdbIsFolder(track->tdb))
{
containerTrackCount++;
hPrintf(" <a href='hgTrackUi?db=%s&g=%s&%s=Search' title='Configure this container track...'><IMG SRC='../images/folderWrench.png'></a> ",database,track->track,TRACK_SEARCH);
}
hPrintf("</td>\n");
// shortLabel has description popup and longLabel has "..." metadata
hPrintf("<td><a target='_top' onclick=\"hgTrackUiPopUp('%s',true); return false;\" href='%s' title='Display track details'>%s</a></td>\n", track->track, trackUrl(track->track, NULL), track->shortLabel);
hPrintf("<td>%s", track->longLabel);
compositeMetadataToggle(database, track->tdb, "...", TRUE, FALSE, tdbHash);
hPrintf("</td></tr>\n");
}
//hPrintf("</table>\n");
// Closing view in browser button and foundTracks count
hPrintf("<tr><td nowrap colspan=3>");
hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='Return to Browser' class='viewBtn' style='font-size:.8em;'>");
hPrintf(" <FONT class='selCbCount'></font>");
if(tracksFound >= ENOUGH_FOUND_TRACKS)
{
hPrintf("</td><td align='right' valign='top'>\n");
findTracksPageLinks(tracksFound,startFrom);
hPrintf("</td></tr>\n");
}
hPrintf("</table>\n");
if(containerTrackCount > 0)
hPrintf("<BR><IMG SRC='../images/folderWrench.png'> Tracks so marked are containers which group related data tracks. Containers may need additional configuration (by clicking on the <IMG SRC='../images/folderWrench.png'> icon) before they can be viewed in the browser.<BR>\n");
//hPrintf("* Tracks so marked are containers which group related data tracks. These may not be visible unless further configuration is done. Click on the * to configure these.<BR><BR>\n");
hPrintf("\n</form>\n");
// be done with json
hWrites(jsonTdbSettingsUse(&jsonTdbVars));
}
#ifdef OMIT
if(!doSearch)
{
hPrintf("<p><b>Recently Done</b><ul>\n"
"<li>Can now page through found tracks 100 at a time.</li>"
"<li>Added <IMG SRC='../images/folderWrench.png'> icon for contqainers with a configuration link. Is this okay?</li>"
"<li>SuperTracks can now be found.</li>"
"<li>Configuration of superTrack children's vis should result in proper superTrack reshaping. (This is really an hgTrackUi feature.)</li>"
"<li>Added sort toggle: Relevance, Alphabetically or by Hierarchy.</li>"
"<li>Composite/view visibilites in hgTrackUi get reshaped to reflect found/selected subtracks. (In demo1: only default state composites; demo2: all composites.)</li>"
"<li>Non-data 'container' tracks (composites and supertracks) have '*' to mark them, and can be configured before displaying. Better suggestions?</li>"
"</ul></p>"
"<p><b>Suggested improvments:</b><ul>\n"
"<li>The metadata values will not be white-listed, but it would be nice to have more descriptive text for them. A short label added to cv.ra?</li>"
"<li>Look and feel of found track list (here) and composite subtrack list (hgTrackUi) should converge. Jim suggests look and feel of hgTracks 'Configure Tracks...' list instead.</li>"
"<li>Drop-down list of terms (cells, antibodies, etc.) should be multi-select with checkBoxes as seen in filterComposites. Perhaps saved for v2.0.</li>"
"</ul></p>\n");
}
#endif///def OMIT
hPrintf("</div>"); // This div allows the clear button to empty it
}
static void displayFoundTracks(struct cart *cart, struct slRef *tracks, int tracksFound,
enum sortBy sortBy)
// Routine for displaying found tracks
{
hPrintf("<div id='found' style='display:none;'>\n"); // This div is emptied with 'clear' button
if (tracksFound < 1)
{
hPrintf("<p>No tracks found</p>\n");
}
else
{
hPrintf("<form action='%s' name='%s' id='%s' method='post'>\n\n",
hgTracksName(),SEARCH_RESULTS_FORM,SEARCH_RESULTS_FORM);
cartSaveSession(cart); // Creates hidden var of hgsid to avoid bad voodoo
int startFrom = 0;
hPrintf("<table id='foundTracks'>\n");
// Opening view in browser button and foundTracks count
#define ENOUGH_FOUND_TRACKS 10
if (tracksFound >= ENOUGH_FOUND_TRACKS)
{
hPrintf("<tr><td nowrap colspan=3>\n");
hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='return to browser' class='viewBtn' "
"style='font-size:.8em;'>");
hPrintf(" <span class='selCbCount'></span>\n");
startFrom = cartUsualInt(cart,TRACK_SEARCH_PAGER,0);
if (startFrom > 0 && startFrom < tracksFound)
{
int countUp = 0;
for (countUp=0; countUp < startFrom;countUp++)
{
if (slPopHead(&tracks) == NULL) // memory waste
break;
}
}
hPrintf("</td><td align='right' valign='bottom'>\n");
findTracksPageLinks(tracksFound,startFrom);
hPrintf("</td></tr>\n");
}
// Begin foundTracks table
//hPrintf("<table id='foundTracks'><tr><td colspan='2'>\n");
hPrintf("<tr><td colspan='2'>\n");
hPrintf("</td><td align='right'>\n");
hPrintf("</td></tr><tr bgcolor='#%s'><td>",HG_COL_HEADER);
#define PM_BUTTON \
"<IMG height=18 width=18 onclick=\"return findTracks.checkAllWithWait(%s);\" " \
"id='btn_%s' src='../images/%s' title='%s all found tracks'>"
hPrintf(PM_BUTTON,"true", "plus_all", "add_sm.gif", "Select");
hPrintf(PM_BUTTON,"false","minus_all","remove_sm.gif","Unselect");
hPrintf("</td><td><b>Visibility</b></td><td colspan=2> <b>Track Name</b>\n");
// Sort options?
if (tracksFound >= ENOUGH_FOUND_TRACKS)
{
hPrintf("<span style='float:right;'>Sort:");
cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "0", (sortBy == sbRelevance),
"onclick=\"findTracks.sortNow(this);\"");
hPrintf("by Relevance");
cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "1", (sortBy == sbAbc),
"onclick=\"findTracks.sortNow(this);\"");
hPrintf("Alphabetically");
cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "2",(sortBy == sbHierarchy),
"onclick=\"findTracks.sortNow(this);\"");
hPrintf("by Hierarchy </span>\n");
}
hPrintf("</td></tr>\n");
// Set up json for js functionality
struct jsonElement *jsonTdbVars = newJsonObject(newHash(8));
int trackCount=0;
boolean containerTrackCount = 0;
struct slRef *ptr;
while((ptr = slPopHead(&tracks)))
{
if (++trackCount > MAX_FOUND_TRACKS)
break;
struct track *track = (struct track *) ptr->val;
jsonTdbSettingsBuild(jsonTdbVars, track, FALSE); // FALSE: No config from track search
if (tdbIsFolder(track->tdb)) // supertrack
hPrintf("<tr class='bgLevel4' valign='top' class='found'>\n");
else if (tdbIsContainer(track->tdb))
hPrintf("<tr class='bgLevel3' valign='top' class='found'>\n");
else
hPrintf("<tr class='bgLevel2' valign='top' class='found'>\n");
hPrintf("<td align='center'>\n");
// Determine visibility and checked state
track->visibility = tdbVisLimitedByAncestors(cart, track->tdb, TRUE, TRUE);
boolean checked = ( track->visibility != tvHide );
if (tdbIsContainerChild(track->tdb))
{
// Don't need all 4 states here. Visible=checked&&enabled
checked = fourStateVisible(subtrackFourStateChecked(track->tdb,cart));
// Checked is only if subtrack level vis is also set!
checked = (checked && ( track->visibility != tvHide ));
}
// Setup the check box
#define CB_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s_sel' VALUE='%s'>"
// subtracks and folder children get "_sel" var. ("_sel" var is temp on folder children)
if (tdbIsContainerChild(track->tdb) || tdbIsFolderContent(track->tdb))
hPrintf(CB_HIDDEN_VAR,track->track,checked?"1":CART_VAR_EMPTY);
#define CB_SEEN "<INPUT TYPE=CHECKBOX id='%s_sel_id' VALUE='on' class='selCb' " \
"onclick='findTracks.clickedOne(this,true);'%s>"
hPrintf(CB_SEEN,track->track,(checked?" CHECKED":""));
hPrintf("</td><td>\n");
// Setup the visibility drop down
#define VIS_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s' VALUE='%s'>"
hPrintf(VIS_HIDDEN_VAR,track->track,CART_VAR_EMPTY); // All tracks get vis hidden var
char extra[512];
if (tdbIsFolder(track->tdb))
{
safef(extra,sizeof(extra),"id='%s_id' onchange='findTracks.changeVis(this)'",
track->track);
hideShowDropDownWithClassAndExtra(track->track, (track->visibility != tvHide),
"normalText visDD",extra);
}
else
{
safef(extra,sizeof(extra),"id='%s_id' onchange='findTracks.changeVis(this)'",
track->track);
hTvDropDownClassWithJavascript(NULL, track->visibility,track->canPack,
"normalText seenVis",extra);
}
// If this is a container track, allow configuring...
if (tdbIsContainer(track->tdb) || tdbIsFolder(track->tdb))
{
containerTrackCount++; // Using onclick ensures return to search tracks on submit
hPrintf(" <IMG SRC='../images/folderWrench.png' style='cursor:pointer;' "
"title='Configure this track container...' "
"onclick='findTracks.configSet(\"%s\");'> ", track->track);
}
//#define SHOW_PARENT_FOLDER
#ifdef SHOW_PARENT_FOLDER
else if (tdbIsContainerChild(track->tdb) || tdbIsFolderContent(track->tdb))
{
struct trackDb *parentTdb =
tdbIsContainerChild(track->tdb) ? tdbGetContainer(track->tdb)
: tdbGetImmediateFolder(track->tdb);
if (parentTdb != NULL) // Using href will not return to search tracks on submit
hPrintf(" <A HREF='../cgi-bin/hgTrackUi?g=%s'><IMG SRC='../images/folderC.png'"
" title='Navigate to parent container...'></A> ", parentTdb->track);
}
#endif///def SHOW_PARENT_FOLDER
hPrintf("</td>\n");
// shortLabel has description popup and longLabel has "..." metadata
hPrintf("<td><a target='_top' onclick=\"popUp.hgTrackUi('%s',true); return false;\" "
"href='%s' title='Display track details'>%s</a></td>\n",
track->track, trackUrl(track->track, NULL), track->shortLabel);
hPrintf("<td>%s", track->longLabel);
compositeMetadataToggle(database, track->tdb, NULL, TRUE, FALSE);
hPrintf("</td></tr>\n");
}
//hPrintf("</table>\n");
// Closing view in browser button and foundTracks count
hPrintf("<tr><td nowrap colspan=3>");
hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='Return to Browser' class='viewBtn' "
"style='font-size:.8em;'>");
hPrintf(" <span class='selCbCount'></span>");
if (tracksFound >= ENOUGH_FOUND_TRACKS)
{
hPrintf("</td><td align='right' valign='top'>\n");
findTracksPageLinks(tracksFound,startFrom);
hPrintf("</td></tr>\n");
}
hPrintf("</table>\n");
if (containerTrackCount > 0)
hPrintf("<BR><IMG SRC='../images/folderWrench.png'> Tracks so marked are containers "
"which group related data tracks. Containers may need additional configuration "
"(by clicking on the <IMG SRC='../images/folderWrench.png'> icon) before they can "
"be viewed in the browser.<BR>\n");
//hPrintf("* Tracks so marked are containers which group related data tracks. These may "
// "not be visible unless further configuration is done. Click on the * to "
// "configure these.<BR><BR>\n");
hPrintf("\n</form>\n");
// be done with json
jsonTdbSettingsUse(jsonTdbVars);
}
hPrintf("</div>"); // This div allows the clear button to empty it
}