/// parse the command line options for the program
AnyOption *parseOptions (int argc, char *argv[], algorithm_t &algorithm) {
AnyOption *opt = new AnyOption;
/* parse command line options */
opt->setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt->setOption ("loglevel", 'l');
opt->setOption ("sort", 's');
opt->setFlag ("x", 'x'); /* special debugging flag */
opt->setOption ("restart", 'r');
opt->setOption ("oaconfig", 'c'); /* file that specifies the design */
opt->setOption ("output", 'o'); /* prefix for output files */
opt->setFlag ("generate", 'g'); /* only generate extensions, do not perform LMC check */
opt->setFlag ("coptions"); /* print compile time options */
opt->setOption ("format", 'f'); /* format to write to */
opt->setOption ("mode", 'm'); /* algorithm method */
opt->setOption ("maxk", 'K'); /* max number of columns to extend to */
opt->setOption ("rowsymmetry", 'R'); /* max number of columns to extend to */
opt->setFlag ("streaming"); /* operate in streaming mode */
opt->setOption ("initcolprev", 'I'); /* algorithm method */
opt->addUsage ("Orthonal Arrays: extend orthogonal arrays");
#ifdef OAEXTEND_SINGLECORE
opt->addUsage ("Usage: oaextendmpi [OPTIONS]");
#else
opt->addUsage ("Usage: oaextendsingle [OPTIONS]");
#endif
opt->addUsage ("");
opt->addUsage (" -h --help Prints this help ");
opt->addUsage (" --coptions Show compile time options used ");
opt->addUsage (" -r [FILE] --restart [FILE] Restart with results file ");
opt->addUsage (" -l [LEVEL] --loglevel [LEVEL] Set loglevel to number ");
opt->addUsage (" -s [INTEGER] --sort [INTEGER] Sort input and output arrays (default: 1) ");
opt->addUsage (" -c [FILE] --oaconfig [FILE] Set file with design specification");
opt->addUsage (" -g --generate [FILE] Only generate arrays, do not perform LMC check");
opt->addUsage (" --rowsymmetry [VALUE] Use row symmetry in generation");
opt->addUsage (" -o [STR] --output [FILE] Set prefix for output (default: result) ");
opt->addUsage (" -f [FORMAT] Output format (default: TEXT, or BINARY, D, Z). Format D is "
"binary difference, format Z is binary with zero-difference ");
opt->addUsage (" --initcolprev [INTEGER] Initialization method of new column (default: 1)");
opt->addUsage (
" --maxk [INTEGER] Maximum number of columns to exten to (default: extracted from config file) ");
opt->addUsage (
" --streaming Operate in streaming mode. Generated arrays will be written to disk "
"immediately. ");
std::string ss = printfstring (" -m [MODE] Algorithm (") + algorithm_t_list () + ")\n";
opt->addUsage (ss.c_str ());
// opt->printUsage();
opt->addUsage ("");
opt->addUsage ("Example: ./oaextendsingle -l 2");
opt->processCommandArgs (argc, argv);
if (opt->getValue ("mode") != NULL || opt->getValue ('m') != NULL) {
int vv = atoi (opt->getValue ('m')); // set custom loglevel
algorithm = (algorithm_t)vv;
} else {
algorithm = MODE_AUTOSELECT;
}
return opt;
}
int main(int argc, char * argv[], MPI_Comm commWorld)
{
#else
int main(int argc, char * argv[])
{
MPI_Comm commWorld;
#endif
std::string fileName;
int reduceDM = 10;
int reduceS= 1;
#ifndef PARTICLESRENDERER
std::string fullScreenMode = "";
bool stereo = false;
#endif
int nmaxsample = 200000;
std::string display;
bool inSitu = false;
bool quickSync = true;
int sleeptime = 1;
{
AnyOption opt;
#define ADDUSAGE(line) {{std::stringstream oss; oss << line; opt.addUsage(oss.str());}}
ADDUSAGE(" ");
ADDUSAGE("Usage:");
ADDUSAGE(" ");
ADDUSAGE(" -h --help Prints this help ");
ADDUSAGE(" -i --infile # Input snapshot filename ");
ADDUSAGE(" -I --insitu Enable in-situ rendering ");
ADDUSAGE(" --sleep # start up sleep in sec [1] ");
ADDUSAGE(" --noquicksync disable syncing with simulation [enabled] ");
ADDUSAGE(" --reduceDM # cut down DM dataset by # factor [10]. 0-disable DM");
ADDUSAGE(" --reduceS # cut down stars dataset by # factor [1]. 0-disable S");
#ifndef PARTICLESRENDERER
ADDUSAGE(" --fullscreen # set fullscreen mode string");
ADDUSAGE(" --stereo enable stereo rendering");
#endif
ADDUSAGE(" -s --nmaxsample # set max number of samples for DD [" << nmaxsample << "]");
ADDUSAGE(" -D --display # set DISPLAY=display, otherwise inherited from environment");
opt.setFlag ( "help" , 'h');
opt.setOption( "infile", 'i');
opt.setFlag ( "insitu", 'I');
opt.setOption( "reduceDM");
opt.setOption( "sleep");
opt.setOption( "reduceS");
opt.setOption( "fullscreen");
opt.setFlag("stereo");
opt.setOption("nmaxsample", 's');
opt.setOption("display", 'D');
opt.setFlag ( "noquicksync");
opt.processCommandArgs( argc, argv );
if( ! opt.hasOptions() || opt.getFlag( "help" ) || opt.getFlag( 'h' ) )
{
/* print usage if no options or requested help */
opt.printUsage();
::exit(0);
}
char *optarg = NULL;
if (opt.getFlag("insitu")) inSitu = true;
if ((optarg = opt.getValue("infile"))) fileName = std::string(optarg);
if ((optarg = opt.getValue("reduceDM"))) reduceDM = atoi(optarg);
if ((optarg = opt.getValue("reduceS"))) reduceS = atoi(optarg);
#ifndef PARTICLESRENDERER
if ((optarg = opt.getValue("fullscreen"))) fullScreenMode = std::string(optarg);
if (opt.getFlag("stereo")) stereo = true;
#endif
if ((optarg = opt.getValue("nmaxsample"))) nmaxsample = atoi(optarg);
if ((optarg = opt.getValue("display"))) display = std::string(optarg);
if ((optarg = opt.getValue("sleep"))) sleeptime = atoi(optarg);
if (opt.getValue("noquicksync")) quickSync = false;
if ((fileName.empty() && !inSitu) ||
reduceDM < 0 || reduceS < 0)
{
opt.printUsage();
::exit(0);
}
#undef ADDUSAGE
}
MPI_Comm comm = MPI_COMM_WORLD;
int mpiInitialized = 0;
MPI_Initialized(&mpiInitialized);
if (!mpiInitialized)
MPI_Init(&argc, &argv);
else
comm = commWorld;
int nranks, rank;
MPI_Comm_size(comm, &nranks);
MPI_Comm_rank(comm, &rank);
char processor_name[MPI_MAX_PROCESSOR_NAME];
int namelen;
MPI_Get_processor_name(processor_name,&namelen);
fprintf(stderr, "bonsai_renderer:: Proc id: %d @ %s , total processes: %d (mpiInit) \n", rank, processor_name, nranks);
if (rank == 0)
{
char hostname[256];
gethostname(hostname,256);
char * display = getenv("DISPLAY");
fprintf(stderr, "root: %s display: %s \n", hostname, display);
}
if (!display.empty())
{
std::string var="DISPLAY="+display;
putenv((char*)var.c_str());
}
if (rank == 0)
fprintf(stderr, " Sleeping for %d seconds \n", sleeptime);
sleep(sleeptime);
using BonsaiCatalystDataT = BonsaiCatalystData;
BonsaiCatalystDataT *rDataPtr;
if (inSitu)
{
rDataPtr = new BonsaiCatalystDataT(rank,nranks,comm);
}
else
{
if ((rDataPtr = readBonsai<BonsaiCatalystDataT>(rank, nranks, comm, fileName, reduceDM, reduceS)))
{}
else
{
if (rank == 0)
fprintf(stderr, " I don't recognize the format ... please try again , or recompile to use with old tipsy if that is what you use ..\n");
MPI_Finalize();
::exit(-1);
}
rDataPtr->computeMinMax();
rDataPtr->setNewData();
}
assert(rDataPtr != 0);
auto callbackFunc = [&](const int code)
{
int quitL = (code == -1) || terminateRenderer; /* exit code */
int quitG;
MPI_Allreduce(&quitL, &quitG, 1, MPI_INT, MPI_SUM, comm);
if (quitG)
{
MPI_Finalize();
::exit(0);
}
if (inSitu )
if (fetchSharedData(quickSync, *rDataPtr, rank, nranks, comm, reduceDM, reduceS))
{
rDataPtr->setNewData();
}
};
bonsaistd::function<void(int)> callback = callbackFunc;
callback(0); /* init data set */
renderer(
argc, argv,
rank, nranks, comm,
*rDataPtr,
fullScreenMode.c_str(),
stereo,
callback);
// while(1) {}
return 0;
}
int main(int argc, char** argv)
#endif
/*
#else
int WinMain(
HINSTANCE hInstance,
HINSTANCE hPrevInstance,
LPSTR lpCmdLine,
int nCmdShow)
#endif
*/
{
string datapath;
AnyOption *opt = new AnyOption();
opt->addUsage( "" );
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( " -h --help Prints this help " );
opt->addUsage( " -d --data-path /dir Data files path " );
opt->addUsage( "" );
opt->setFlag( "help", 'h' );
opt->setOption( "data-path", 'd' );
opt->processCommandArgs( argc, argv );
if( opt->getFlag( "help" ) || opt->getFlag( 'h' ) )
{
GWDBG_OUTPUT("Usage")
opt->printUsage();
delete opt;
return 0;
}
if( opt->getValue( 'd' ) != NULL || opt->getValue( "data-size" ) != NULL )
datapath = opt->getValue('d');
delete opt;
try
{
#ifdef GP2X
GW_PlatformGP2X platform;
#elif defined(GW_PLAT_PANDORA)
GW_PlatformPandora platform;
#elif defined(GW_PLAT_S60)
GW_PlatformS60 platform;
#elif defined(GW_PLAT_WIZ)
GW_PlatformWIZ platform;
#elif defined(GW_PLAT_ANDROID)
GW_PlatformAndroid platform;
#elif defined(GW_PLAT_IOS)
GW_PlatformIOS platform;
#else
GW_PlatformSDL platform(640, 480);
#endif
if (!datapath.empty())
platform.datapath_set(datapath);
platform.initialize();
GW_GameList gamelist(&platform);
GW_Menu menu(&platform, &gamelist);
menu.Run();
platform.finalize();
} catch (GW_Exception &e) {
GWDBG_OUTPUT(e.what().c_str())
fprintf(stderr, "%s\n", e.what().c_str());
return 1;
}
return 0;
}
/**
Utilizing AnyOption class, take the command line and parse it for valid options. Handle usage printout as well.
@param argc argc from main()
@param char**argv array of char* directly from main()
@returns If an error occurs, return false. Currently no errors. Always returns true.
*/
bool parsecmd(int argc, char**argv)
{
stringstream str;
// Setup all default values if not already set by simple strings and values above.
if (getenv("WEBRTC_SERVER"))
mainserver = xGetDefaultServerName();
if (getenv("WEBRTC_CONNECT"))
{
stunserver = "STUN ";
stunserver += xGetPeerConnectionString();
}
peername = xGetPeerName();
AnyOption *opt = new AnyOption();
opt->addUsage("Usage: ");
opt->addUsage("");
opt->addUsage(" -h --help Prints this help ");
opt->addUsage(" --server <servername|IP>[:<serverport>] Main sever and optional port.");
opt->addUsage(
" --stun <stunserver|IP>[:<port>] STUN server (and optionally port).\n Default is " STUNSERVER_DEFAULT);
opt->addUsage(
" --peername <Name> Use this name as my client/peer name online.");
opt->addUsage("");
opt->addUsage("Environment variables can be used as defaults as well.");
opt->addUsage(" WEBRTC_SERVER - Main server name.");
opt->addUsage(" WEBRTC_CONNECT - STUN server name with port.");
opt->addUsage(" USERNAME - Peer user name.");
opt->addUsage("");
opt->setFlag("help", 'h');
opt->setOption("server");
opt->setOption("stun");
opt->setOption("peername");
opt->processCommandArgs(argc, argv);
/* 6. GET THE VALUES */
if (opt->getFlag("help") || opt->getFlag('h'))
{
opt->printUsage();
exit(1);
}
if (opt->getValue("server"))
{
cout << "New main server is " << opt->getValue("server") << endl;
string serverloc = opt->getValue("server");
size_t colonpos = serverloc.find(':');
mainserver = serverloc.substr(0,colonpos);
if(colonpos != string::npos)
{
stringstream sstrm;
sstrm << serverloc.substr(colonpos+1);
sstrm >> mainserver_port;
}
//
// Function to parse the input options (both command lines and in the options file ModessRD.options)
//
AnyOption *parseInputOptions( int argc, char **argv ) {
// parse input options
AnyOption *opt = new AnyOption();
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "| NCPA Infrasound |" );
opt->addUsage( "| Normal Modes for Range-Dependent Environments |" );
opt->addUsage( "| Two-Way Coupled Mode Solution |" );
opt->addUsage( "| Single Frequency: Effective Sound Speed Approximation |" );
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "Usage: " );
opt->addUsage( "By default the program computes the 1D transmission loss (TL)" );
opt->addUsage( "at the ground or the specified receiver height and saves the data to 2 files:" );
opt->addUsage( " file tloss_rd2wcm_1d.nm - considering attenuation in the atmosphere" );
opt->addUsage( " file tloss_rd2wcm_1d.lossless.nm - no attenuation" );
opt->addUsage( "Additionally, if the flag --write_2D_TLoss is present on the command line the 2D TL is saved to file tloss_rd_2d.nm" );
opt->addUsage( "The options below can be specified in a colon-separated file \"Modess.options\" or at the command line. Command-line options override file options." );
opt->addUsage( " --help -h Print this message and exit" );
opt->addUsage( "" );
opt->addUsage( " The atmosphere can be specified from one of 2 different sources:");
opt->addUsage( " 1. An .env file containing the atmospheric specifications at certain ranges:" );
opt->addUsage( " use option --g2senvfile <filename>" );
opt->addUsage( " 2. Several ASCII files stored in a given directory:" );
opt->addUsage( " use option --use_1D_profiles_from_dir <mydirname>" );
//opt->addUsage( "The program requires an .env file containing the atmospheric specifications at certain ranges" );
opt->addUsage( "The following options apply:" );
opt->addUsage( "" );
opt->addUsage( "REQUIRED (no default values):" );
//opt->addUsage( " --atmosfile <filename> Uses an ASCII atmosphere file" );
opt->addUsage( " --g2senvfile <filename> Uses an .env binary file containing multiple 1D profiles" );
opt->addUsage( " --atmosfileorder The order of the (z,t,u,v,w,p,d) fields in the ASCII file (Ex: 'ztuvpd')" );
opt->addUsage( " --skiplines Lines at the beginning of the ASCII file to skip" );
opt->addUsage( " --azimuth Degrees in range [0,360), clockwise from North" );
opt->addUsage( " --freq Frequency [Hz]" );
opt->addUsage( "" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --maxheight_km Calculation grid height in km above MSL [150 km]" );
opt->addUsage( " --zground_km Height of the ground level above MSL [0 km]" );
opt->addUsage( " --Nz_grid Number of points on the z-grid from ground to maxheight [20000]" );
opt->addUsage( " --sourceheight_km Source height in km Above Ground Level (AGL) [0]" );
opt->addUsage( " --receiverheight_km Receiver height in km AGL [0]" );
opt->addUsage( " --maxrange_km Maximum horizontal distance from origin to propagate [1000 km]" );
opt->addUsage( " --Nrng_steps Number of range steps to propagate [1000]" );
opt->addUsage( " --ground_impedance_model Name of the ground impedance models to be employed:" );
opt->addUsage( " [rigid], others TBD" );
opt->addUsage( " --Lamb_wave_BC If ==1 it sets admittance = -1/2*dln(rho)/dz; [ 0 ]" );
opt->addUsage( " --wind_units Use it to specify 'kmpersec' if the winds are given in km/s [mpersec]" );
opt->addUsage( " --use_attn_file Use it to specify a file name containing user-provided" );
opt->addUsage( " attenuation coefficients to be loaded instead of " );
opt->addUsage( " the default Sutherland-Bass attenuation. " );
opt->addUsage( " The text file should contain two columns: " );
opt->addUsage( " height (km AGL) and " );
opt->addUsage( " attenuation coefficients in np/m." );
opt->addUsage( "" );
opt->addUsage( " --use_profile_ranges_km" );
opt->addUsage( " e.g. --use_profile_ranges_km 0_20_50_80.5_300 " );
opt->addUsage( " The profiles at certain ranges specified by numbers" );
opt->addUsage( " (in km) in a string such as 0_20_50_80.5_300 are");
opt->addUsage( " requested in the propagation. Note that underscores" );
opt->addUsage( " are necessary to separate the numbers." );
opt->addUsage( " Note also that these are requested ranges;" );
opt->addUsage( " however the left-closest profile available" );
opt->addUsage( " in the .env file will actually be used; " );
opt->addUsage( " for instance we request the profile at 300 km " );
opt->addUsage( " but in the .env file the left-closest profile" );
opt->addUsage( " may be available at 290 km and it is the one used." );
opt->addUsage( " Example: >> ../bin/ModessRD2WCM --atmosfile g2sgcp2011012606L.jordan.env ");
opt->addUsage( " --atmosfileorder zuvwtdp --azimuth 90 --freq 0.01 ");
opt->addUsage( " --use_profiles_ranges_km 100_200_250 --maxrange_km 500 ");
opt->addUsage( "" );
opt->addUsage( " --use_profiles_at_steps_km" );
opt->addUsage( " e.g. --use_profiles_at_steps_km 100" );
opt->addUsage( " The profiles are requested at equidistant intervals " );
opt->addUsage( " specified by this option [1000]" );
opt->addUsage( "" );
opt->addUsage( " --use_1D_profiles_from_dir" );
opt->addUsage( " e.g. --use_1D_profiles_from_dir myprofiles" );
opt->addUsage( " This option allows to use the ascii profiles stored in" );
opt->addUsage( " the specified directory. The profiles must have names" );
opt->addUsage( " 'profiles0001', 'profiles0002', etc. and will be" );
opt->addUsage( " used in alphabetical order at the provided ranges" );
opt->addUsage( " e.g. in conjunction with either" );
opt->addUsage( " option '--use_profile_ranges_km' " );
opt->addUsage( " or option '--use_profiles_at_steps_km'" );
opt->addUsage( " If there are more requested ranges than existing" );
opt->addUsage( " profiles then the last profile is used repeatedly" );
opt->addUsage( " as necessary." );
opt->addUsage( " Example: >> ../bin/ModessRD2WCM --atmosfileorder zuvwtdp --skiplines 1" );
opt->addUsage( " --azimuth 90 --freq 0.1 --use_1D_profiles_from_dir myprofiles" );
opt->addUsage( " --use_profile_ranges_km 0_100_300_500 " );
opt->addUsage( "" );
opt->addUsage( "FLAGS (no value required):" );
opt->addUsage( " --write_2D_TLoss Outputs the 2D transmission loss to" );
opt->addUsage( " default file: tloss_rd2wcm_2d.nm" );
opt->addUsage( "" );
opt->addUsage( "" );
opt->addUsage( " The format of the output files are as follows (column order):" );
opt->addUsage( " tloss_rd2wcm_1d.nm: r, 4*PI*Re(P), 4*PI*Im(P), (incoherent TL)" );
opt->addUsage( " tloss_rd2wcm_1d.lossless.nm:" );
opt->addUsage( " tloss_rd2wcm_2d.nm: r, z, 4*PI*Re(P), 4*PI*Im(P)" );
opt->addUsage( "" );
opt->addUsage( " Examples to run (in the 'samples' directory):" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModessRD2WCM --use_1D_profiles_from_dir profiles --atmosfileorder zuvwtdp --skiplines 1 --azimuth 90 --freq 0.1 --use_profile_ranges_km 0_100_200_300 --maxrange_km 500" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModessRD2WCM --g2senvfile g2sgcp2011012606L.jordan.env --atmosfileorder zuvwtdp --skiplines 1 --azimuth 90 --freq 0.1 --use_profile_ranges_km 0_100_200_250 --maxrange_km 500" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModessRD2WCM --use_1D_profiles_from_dir profiles --atmosfileorder zuvwtdp --skiplines 1 --azimuth 90 --freq 0.1 --maxrange_km 500" );
opt->addUsage( "" );
opt->addUsage( " Note: if options --use_profile_ranges_km/--use_profiles_at_steps_km are not used then we fall back on the range-independent case using the first available atm. profile." );
opt->addUsage( "" );
// Set up the actual flags, etc.
opt->setFlag( "help", 'h' );
opt->setFlag( "write_2D_TLoss" );
opt->setFlag( "plot" );
opt->setOption( "atmosfile" );
opt->setOption( "atmosfileorder" );
opt->setOption( "g2senvfile" );
opt->setOption( "wind_units" );
opt->setOption( "use_1D_profiles_from_dir" );
opt->setOption( "slicefile" );
opt->setOption( "skiplines" );
opt->setOption( "azimuth" );
opt->setOption( "freq" );
opt->setOption( "maxrange_km" );
opt->setOption( "sourceheight_km" );
opt->setOption( "receiverheight_km" );
opt->setOption( "maxheight_km" );
opt->setOption( "zground_km" );
opt->setOption( "stepsize" );
opt->setOption( "Nz_grid" );
opt->setOption( "Nrng_steps" );
opt->setOption( "ground_impedance_model" );
opt->setOption( "Lamb_wave_BC" );
opt->setOption( "use_profile_ranges_km" );
opt->setOption( "use_profiles_at_steps_km" );
opt->setOption( "use_attn_file" );
// Process the command-line arguments
opt->processFile( "./ModessRD2WCM.options" );
opt->processCommandArgs( argc, argv );
if( ! opt->hasOptions()) { // print usage if no options
opt->printUsage();
delete opt;
exit( 1 );
}
// Check to see if help text was requested
if ( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ) {
opt->printUsage();
exit( 1 );
}
return opt;
}
/**
* @brief Filter arrays in a file and write filtered arrays to output file
* @param argc Number of command line arguments
* @param argv Command line arguments
* @return
*/
int main (int argc, char *argv[]) {
AnyOption opt;
/* parse command line options */
opt.setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt.setOption ("output", 'o');
opt.setOption ("verbose", 'v');
opt.setOption ("na", 'a');
opt.setOption ("index", 'i');
opt.setOption ("format", 'f');
opt.addUsage ("Orthonal Array Filter: filter arrays");
opt.addUsage ("Usage: oaanalyse [OPTIONS] [INPUTFILE] [VALUESFILE] [THRESHOLD] [OUTPUTFILE]");
opt.addUsage (" The VALUESFILE is a binary file with k*N double values. Here N is the number of arrays");
opt.addUsage (" and k the number of analysis values.");
opt.addUsage ("");
opt.addUsage (" -h --help Prints this help ");
opt.addUsage (" -v --verbose Verbose level (default: 1) ");
opt.addUsage (" -a Number of values in analysis file (default: 1) ");
opt.addUsage (" --index Index of value to compare (default: 0) ");
opt.addUsage (" -f [FORMAT] Output format (default: TEXT, or BINARY; B) ");
opt.processCommandArgs (argc, argv);
print_copyright ();
/* parse options */
if (opt.getFlag ("help") || opt.getFlag ('h') || opt.getArgc () < 4) {
opt.printUsage ();
exit (0);
}
int verbose = opt.getIntValue ('v', 1);
int na = opt.getIntValue ('a', 1);
int index = opt.getIntValue ("index", 0);
std::string format = opt.getStringValue ('f', "BINARY");
arrayfile::arrayfilemode_t mode = arrayfile_t::parseModeString (format);
/* read in the arrays */
std::string infile = opt.getArgv (0);
std::string anafile = opt.getArgv (1);
double threshold = atof (opt.getArgv (2));
std::string outfile = opt.getArgv (3);
if (verbose)
printf ("oafilter: input %s, threshold %f (analysisfile %d values, index %d)\n", infile.c_str (),
threshold, na, index);
arraylist_t *arraylist = new arraylist_t;
int n = readarrayfile (opt.getArgv (0), arraylist);
if (verbose)
printf ("oafilter: filtering %d arrays\n", n);
// read analysis file
FILE *afid = fopen (anafile.c_str (), "rb");
if (afid == 0) {
printf (" could not read analysisfile %s\n", anafile.c_str ());
exit (0);
}
double *a = new double[n * na];
fread (a, sizeof (double), n * na, afid);
fclose (afid);
std::vector< int > gidx;
;
for (int jj = 0; jj < n; jj++) {
double val = a[jj * na + index];
if (val >= threshold)
gidx.push_back (jj);
if (verbose >= 2)
printf ("jj %d: val %f, threshold %f\n", val >= threshold, val, threshold);
}
// filter
arraylist_t *filtered = new arraylist_t;
selectArrays (*arraylist, gidx, *filtered);
/* write arrays to file */
if (verbose)
cout << "Writing " << filtered->size () << " arrays (input " << arraylist->size () << ") to file "
<< outfile << endl;
writearrayfile (outfile.c_str (), *filtered, mode);
/* free allocated structures */
delete[] a;
delete arraylist;
delete filtered;
return 0;
}
AnyOption *parseInputOptions( int argc, char **argv ) {
// parse input options
AnyOption *opt = new AnyOption();
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "| NCPA Infrasound |" );
opt->addUsage( "| Normal Modes Broadband |" );
opt->addUsage( "| Based on either: Effective Sound Speed Approximation - see ModESS |" );
opt->addUsage( "| Wide_Angle High-Mach code - see WMod |" );
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( "The options below can be specified in a colon-separated file \"ModBB.options\"");
opt->addUsage( "or at the command line. Command-line options override file options." );
opt->addUsage( "Be sure to precede all options with two minuses (--)." );
opt->addUsage( " --help -h Print this message and exit" );
opt->addUsage( "" );
opt->addUsage( "One of two algorithms can be used to perform pulse propagation." );
opt->addUsage( "The first is based on the Effective Sound Speed Approximation (as in ModESS);" );
opt->addUsage( "the second is based on the the Wide_Angle High-Mach solution ");
opt->addUsage( "of the wave equation (see implementation in WMod)." );
opt->addUsage( "ModESS is faster but it is accurate for (launch) angles less than 30 deg and" );
opt->addUsage( "low wind speeds. WMod extends the validity to higher angles" );
opt->addUsage( "and high Mach numbers but it runs slower." );
opt->addUsage( "Options --use_modess and --use_wmod allow the user to choose");
opt->addUsage( "the desired algorithm when computing the dispersion data (see step 1 below)." );
opt->addUsage( "" );
opt->addUsage( "To propagate a pulse, 2 steps must be completed:");
opt->addUsage( " 1. A dispersion file must be available or computed" );
opt->addUsage( " using the option --out_disp_src2rcv_file ." );
// opt->addUsage( " use either option --out_dispersion_files or --out_disp_src2rcv_file" );
opt->addUsage( " 2. Perform pulse propagation for one of several scenarios:");
opt->addUsage( " a. source-to-receiver at one range (option --pulse_prop_src2rcv)");
opt->addUsage( " b. source-to-receiver at several equally spaced ranges " );
opt->addUsage( " (option --pulse_prop_src2rcv_grid)");
// opt->addUsage( " c. computing the whole 2D pressure field " );
// opt->addUsage( " (most expensive - option --pulse_prop_grid)" );
opt->addUsage( " The source type can be one of the following:" );
opt->addUsage( " delta function -> see option --get_impulse_resp" );
opt->addUsage( " built-in pulse choice 1 -> see option --use_builtin_pulse1" );
opt->addUsage( " built-in pulse choice 2 -> see option --use_builtin_pulse2" );
opt->addUsage( " user-provided spectrum file -> see option --src_spectrum_file" );
opt->addUsage( " user-provided waveform file -> see option --src_waveform_file" );
opt->addUsage( "" );
// opt->addUsage( "To compute a dispersion file: one of the following 2 options is REQUIRED:" );
opt->addUsage( "To compute a dispersion file: the following option is REQUIRED:" );
opt->addUsage( " --out_disp_src2rcv_file <dispersion filename>");
opt->addUsage( " Output dispersion curves and modal values for" );
opt->addUsage( " source-to-receiver propagation to the specified file." );
// opt->addUsage( " --out_dispersion_files <dispersion filename stub>");
// opt->addUsage( " Output dispersion curves and modal values on a 2D grid" );
// opt->addUsage( " to binary files at each frequency. The resulting filenames" );
// opt->addUsage( " have the stub and frequency appended: " );
// opt->addUsage( " e.g. <stub><freq>_nm.bin." );
// opt->addUsage( " This option is computationally expensive." );
opt->addUsage( "" );
// opt->addUsage( " Examples (run in the 'samples' directory):" );
// opt->addUsage( "" );
// opt->addUsage( " a. Compute dispersion file that will be used to compute the pressure pulse at 1 receiver. Assume that we want to end up with a pulse having a spectrum with a maximum frequency of f_max=0.5 Hz. Also assume that we want the pulse represented on a time record of T=512 seconds. The number of positive frequencies necessary for the calculation is T*f_max = 256 i.e.256 frequencies between 0 and 0.5 Hz. Thus we know f_max=0.5 Hz and f_step=f_max/256=0.001953125 Hz. The corresponding run command is:" );
opt->addUsage( " Example (run in the 'samples' directory):" );
opt->addUsage( "" );
opt->addUsage( " Example to obtain a dispersion file that will be used to compute" );
opt->addUsage( " the propagated pressure pulse at a distant receiver. " );
opt->addUsage( " Assume that we want to end up with a pulse having a spectrum" );
opt->addUsage( " with a maximum frequency of f_max=0.5 Hz. " );
opt->addUsage( " Also assume that we want the pulse represented on a time record " );
opt->addUsage( " of T=512 seconds. The number of positive frequencies necessary " );
opt->addUsage( " for the calculation is T*f_max = 256 i.e.256 frequencies " );
opt->addUsage( " between f_min=f_step and 0.5 Hz. The step in frequency is " );
opt->addUsage( " f_step=f_max/256=0.001953125 Hz." );
opt->addUsage( " The corresponding run command is:" );
opt->addUsage( "" );
opt->addUsage( " >> ../bin/ModBB --out_disp_src2rcv_file myDispersionFile.dat " );
opt->addUsage( " --atmosfile NCPA_canonical_profile_zuvwtdp.dat --atmosfileorder zuvwtdp " );
opt->addUsage( " --skiplines 0 --azimuth 90 --f_step 0.001953125 --f_max 0.5 --use_modess" );
opt->addUsage( "" );
opt->addUsage( " Each line in this dispersion file has (4 + 4*n_modes) entries" );
opt->addUsage( " in the following format:" );
opt->addUsage( " freq n_modes rho_src rho_rcv Re(k_pert_m) Im(k_pert_m) V_m(z_src) V_m(z_rcv)" );
opt->addUsage( " where m varies from 1 to n_modes. k_pert_m, and V_m are" );
opt->addUsage( " the m_th wavenumber and mode amplitude respectively." );
opt->addUsage( " z_src and z_rcv stand for source and receiver height respectively." );
opt->addUsage( "" );
// opt->addUsage( " b. Compute dispersion files for propagation to all receivers on a 2D grid: for 256 frequencies from 0 to 0.5 Hz in steps of 0.5/256 Hz:" );
// opt->addUsage( "" );
// opt->addUsage( " >> ../bin/ModBB --out_dispersion_files disprs --atmosfile NCPA_canonical_profile_zuvwtdp.dat --atmosfileorder zuvwtdp --skiplines 0 --azimuth 90 --f_step 0.001953125 --f_max 0.5 --use_modess" );
opt->addUsage( "" );
opt->addUsage( "In addition the following options are REQUIRED:" );
opt->addUsage( " --use_modess Prompts the use of ModESS algorithm." );
opt->addUsage( " --use_wmod Prompts the use of WMod algorithm." );
opt->addUsage( " Note that --use_modess and --use_wmod are mutually exclusive." );
opt->addUsage( " --atmosfile <filename> Uses an ASCII atmosphere file" );
opt->addUsage( " referenced to Mean Sea Level (MSL)." );
opt->addUsage( " --atmosfileorder The order of the (z,t,u,v,w,p,d) fields in " );
opt->addUsage( " the ASCII file (Ex: 'ztuvpd')" );
opt->addUsage( " --skiplines Lines at the beginning of the ASCII file to skip" );
opt->addUsage( " --azimuth Value in range [0,360), clockwise from North" );
opt->addUsage( " --f_step The frequency step" );
opt->addUsage( " --f_max Maximum frequency to propagate" );
opt->addUsage( " Note that in this case the array of frequencies is [f_step:f_step:f_max]." );
opt->addUsage( "" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --f_min Minimum frequency [f_step Hz] " );
opt->addUsage( " --maxheight_km Calculation grid height in km above MSL [150 km]" );
opt->addUsage( " --zground_km Height of the ground level above MSL [0 km]" );
opt->addUsage( " --Nz_grid Number of points on the z-grid from the ground" );
opt->addUsage( " to maxheight [20000]" );
opt->addUsage( " --sourceheight_km Source height in km Above Ground Level (AGL) [0]" );
opt->addUsage( " --receiverheight_km Receiver height in km AGL [0]" );
opt->addUsage( " --maxrange_km Maximum horizontal distance from origin to propagate" );
opt->addUsage( " [1000 km]" );
opt->addUsage( " --ground_impedance_model Name of the ground impedance models to be employed:" );
opt->addUsage( " [rigid], TBD" );
opt->addUsage( " --Lamb_wave_BC For a rigid ground: if ==1 it sets" );
opt->addUsage( " admittance= = -1/2*dln(rho)/dz; [ 0 ]" );
opt->addUsage( " --wind_units Use it to specify 'kmpersec' if the winds are given" );
opt->addUsage( " in km/s [ mpersec ]" );
opt->addUsage( " --use_attn_file Option to specify a file name containing" );
opt->addUsage( " user-provided attenuation coefficients " );
opt->addUsage( " to be loaded instead of the default" );
opt->addUsage( " Sutherland-Bass attenuation. " );
opt->addUsage( " The text file should contain two columns: " );
opt->addUsage( " height (km AGL) and " );
opt->addUsage( " attenuation coefficients in np/m." );
opt->addUsage( " --c_min Specify the minimum phase speed (in m/sec)." );
opt->addUsage( " This is used in conjunction with the --wvnum_filter" );
opt->addUsage( " flag which turns on wavenumber filtering by" );
opt->addUsage( " phase speed. See also the --wvnum_filter flag" );
opt->addUsage( " and the --c_max option." );
opt->addUsage( " --c_max Specify the maximum phase speed (in m/sec)." );
opt->addUsage( "" );
opt->addUsage( "FLAGS (no value required after the flag itself):" );
opt->addUsage( " --turnoff_WKB Turn off the WKB least phase speed estimation," );
opt->addUsage( " an approximation that speeds-up ground-to-ground" );
opt->addUsage( " propagation. If either or both the source and " );
opt->addUsage( " receiver are not on the ground [height=0] " );
opt->addUsage( " the approximation is turned off by default" );
opt->addUsage( " regardless whether the flag is mentioned" );
opt->addUsage( " in the command line or not." );
opt->addUsage( " --use_zero_attn Set attenuation to zero.");
opt->addUsage( " Reads the dispersion file and sets the");
opt->addUsage( " imaginary part of the wavenumber to zero.");
opt->addUsage( " --wvnum_filter Applies wavenumber filtering by phase speed" );
opt->addUsage( " and should be followed by specification of" );
opt->addUsage( " the parameters:" );
opt->addUsage( " --c_min minimum phase speed (in m/sec)." );
opt->addUsage( " --c_max maximum phase speed (in m/sec)." );
opt->addUsage( "" );
opt->addUsage( "" );
opt->addUsage( "Options for PULSE PROPAGATION:" );
opt->addUsage( " --pulse_prop_src2rcv <dispersion filename> ");
opt->addUsage( " Propagate pulse from source to 1 receiver");
opt->addUsage( " at a distance specified by option --range_R_km; " );
opt->addUsage( " --range_R_km Propagate pulse to this range [km]" );
opt->addUsage( " --waveform_out_file <waveform filename> Name of the waveform output file" );
opt->addUsage( "" );
opt->addUsage( " --pulse_prop_src2rcv_grid <dispersion filename> ");
opt->addUsage( " Propagate pulse from source to array of ");
opt->addUsage( " horizontally equally-spaced receivers" );
opt->addUsage( "" );
opt->addUsage( " REQUIRED additional options:" );
opt->addUsage( " --f_center The center frequency of the built-in pulse choices 1 and 2" );
opt->addUsage( " (f_center<=f_max/5)" );
opt->addUsage( " --R_start_km Propagation from this range to R_end_km in DR_km steps." );
opt->addUsage( " --R_end_km Pulse is propagated from R_start_km to this range." );
opt->addUsage( " --DR_km Range step to propagate from R_start_km to R_end_km." );
opt->addUsage( " --waveform_out_file <waveform filename> ");
opt->addUsage( " Name of the waveform output file." );
opt->addUsage( "" );
opt->addUsage( " OPTIONAL [defaults]:" );
opt->addUsage( " --max_celerity Maximum celerity [340 m/s]." );
opt->addUsage( " --nfft Number of points used in the FFT computation. ");
opt->addUsage( " Defaults to [4*f_max/f_step]." );
opt->addUsage( "" );
opt->addUsage( "" );
opt->addUsage( "SOURCE TYPE input options: Use one of the following 4 options" );
opt->addUsage( " to specify the source type:" );
opt->addUsage( " --get_impulse_resp Flag to use a delta function as source and" );
opt->addUsage( " to output the impulse response." );
opt->addUsage( " --use_builtin_pulse1 Flag to request the use of the built-in source pulse." );
opt->addUsage( " Note: Use --f_center to request the central frequency" );
opt->addUsage( " of the pulse. f_center is restricted to a maximum" );
opt->addUsage( " value of fmax/5 where fmax is the maximum frequency" );
opt->addUsage( " defined by the dispersion file." );
opt->addUsage( " The input waveform and spectrum are also saved for the" );
opt->addUsage( " user's reference such that:" );
opt->addUsage( " The built-in source spectrum is outputted in the file." );
opt->addUsage( " 'source_spectrum_input.dat' with the format." );
opt->addUsage( " | Freq (Hz) | Re(S) | Imag(S) |." );
opt->addUsage( " The input source waveform is outputted in the file." );
opt->addUsage( " 'source_waveform_input.dat' with the format." );
opt->addUsage( " | Time [s] | Amplitude |." );
opt->addUsage( " --use_builtin_pulse2 Flag to request a second shape of built-in source pulse." );
opt->addUsage( " The input waveform and spectrum are also saved for the" );
opt->addUsage( " user's reference such that:" );
opt->addUsage( " The built-in source spectrum is outputted in the file." );
opt->addUsage( " 'source_spectrum_input.dat' with the format." );
opt->addUsage( " | Freq (Hz) | Re(S) | Imag(S) |." );
opt->addUsage( " The input source waveform is outputted in the file." );
opt->addUsage( " 'source_waveform_input.dat' with the format." );
opt->addUsage( " | Time [s] | Amplitude |." );
opt->addUsage( " --src_spectrum_file Specify the file name of the source spectrum");
opt->addUsage( " at positive frequencies. The file must have 3 columns" );
opt->addUsage( " | Freq | Real(Spectrum) | Imag(Spectrum) |" );
opt->addUsage( " Note that the frequencies provided in the file" );
opt->addUsage( " must match the frequencies in the dispersion file." );
opt->addUsage( " --src_waveform_file Specify the file name of the user-provided " );
opt->addUsage( " source waveform. The file must have 2 columns" );
opt->addUsage( " |Time | Amplitude |" );
opt->addUsage( " If none of then source type options are specified the delta function source");
opt->addUsage( " is the default i.e. the output is the impulse response." );
opt->addUsage( "" );
opt->addUsage( " Example: Pulse propagation to a point on the ground at range_R_km" );
opt->addUsage( " and output the impulse response:" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModBB --pulse_prop_src2rcv myDispersionFile.dat --range_R_km 240 " );
opt->addUsage( " --waveform_out_file mywavf.dat --get_impulse_resp" );
opt->addUsage( "" );
opt->addUsage( " Example: Pulse propagation to a point on the ground at range_R_km" );
opt->addUsage( " and employ the user-provided source spectrum:" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModBB --pulse_prop_src2rcv myDispersionFile.dat --range_R_km 240 " );
opt->addUsage( " --waveform_out_file mywavf.dat --max_celerity 300 " );
opt->addUsage( " --src_spectrum_file source_spectrum_example.dat" );
opt->addUsage( "" );
opt->addUsage( " Example: Pulse propagation to several points on the ground 20 km apart" );
opt->addUsage( " and employ the user-provided source waveform:" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModBB --pulse_prop_src2rcv_grid myDispersionFile.dat " );
opt->addUsage( " --R_start_km 240 --DR_km 20 --R_end_km 300 --waveform_out_file mywavf.dat " );
opt->addUsage( " --src_waveform_file source_waveform_input_example.dat" );
opt->addUsage( "" );
opt->addUsage( "" );
/*
// This functionality works but was disabled because of too long computation times.
opt->addUsage( " To compute a 2D field:" );
opt->addUsage( " --pulse_prop_grid <dispersion directory name> ");
opt->addUsage( " Compute/view pulse on the 2D spatial x-z grid of 'height_km'");
opt->addUsage( " and 'width_km' starting at 'R_start_km" );
opt->addUsage( "" );
opt->addUsage( " --------------------------------------------------------------" );
opt->addUsage( " height_km | |" );
opt->addUsage( " | Pressure field computed within |" );
opt->addUsage( " | a 2D (width_km x height_km) grid |" );
opt->addUsage( " | 'ntsteps' times |" );
opt->addUsage( " | every 'tmstep' seconds |" );
opt->addUsage( " | |" );
opt->addUsage( " | |" );
opt->addUsage( " -------------x------------------------------------------------" );
opt->addUsage( " R_start_km" );
opt->addUsage( "" );
opt->addUsage(" Additional parameters:" );
opt->addUsage( " --R_start_km The grid (viewing window) starts at R_start_km" );
opt->addUsage( " --width_km Grid width" );
opt->addUsage( " --max_celerity Reference speed [m/s]; in conjunction with R_start_km");
opt->addUsage( " it is determining where inside the grid the field is at");
opt->addUsage( " a time step; a value smaller than the speed of sound");
opt->addUsage( " at the ground is suggested." );
opt->addUsage( " --tmstep 2D pressure field is calculated at this specified time step." );
opt->addUsage( " --ntsteps Number of times the 2D pressure field is calculated");
opt->addUsage( " 'tmstep' seconds apart." );
opt->addUsage( "" );
opt->addUsage( " OPTIONAL [defaults]:" );
opt->addUsage( " --height_km The height of the 2D grid. [maximum height]" );
opt->addUsage( " --frame_file_stub Each 2D grid is saved into a file with the name");
opt->addUsage( " frame_file_stub_<time_of_start>; Default:[Pressure2D]." );
opt->addUsage( "" );
opt->addUsage( " Example: >> ../bin/ModBB --pulse_prop_grid mydispersionFolder --R_start_km 220 --width_km 50 --height_km 25 --max_celerity 300 --tmstep 30 --ntsteps 5 --frame_file_stub myPressure --use_builtin_pulse" );
opt->addUsage( "" );
*/
// Set up the actual flags, etc.
opt->setFlag( "help", 'h' );
opt->setFlag( "use_modess" );
opt->setFlag( "use_wmod" );
opt->setFlag( "get_impulse_resp" );
opt->setFlag( "use_builtin_pulse1" );
opt->setFlag( "use_builtin_pulse2" );
opt->setFlag( "turnoff_WKB");
opt->setFlag( "plot");
opt->setFlag( "use_zero_attn");
opt->setFlag( "wvnum_filter");
opt->setOption( "atmosfile" );
opt->setOption( "atmosfileorder" );
opt->setOption( "wind_units" );
opt->setOption( "skiplines" );
opt->setOption( "azimuth" );
opt->setOption( "maxrange_km" );
opt->setOption( "sourceheight_km" );
opt->setOption( "receiverheight_km" );
opt->setOption( "maxheight_km" );
opt->setOption( "zground_km" );
opt->setOption( "stepsize" );
opt->setOption( "Nz_grid" );
opt->setOption( "Nrng_steps" );
opt->setOption( "out_TL_2D" );
opt->setOption( "ground_impedance_model" );
opt->setOption( "Lamb_wave_BC" );
opt->setOption( "f_min" );
opt->setOption( "f_step" );
opt->setOption( "f_max" );
opt->setOption( "f_center" );
opt->setOption( "pulse_prop_grid" );
opt->setOption( "pulse_prop_src2rcv" );
opt->setOption( "pulse_prop_src2rcv_grid" );
opt->setOption( "R_start_km" );
opt->setOption( "R_end_km" );
opt->setOption( "DR_km" );
opt->setOption( "max_celerity" );
opt->setOption( "range_R_km" );
opt->setOption( "out_dispersion_files" );
opt->setOption( "out_disp_src2rcv_file" );
opt->setOption( "waveform_out_file" );
opt->setOption( "width_km" );
opt->setOption( "height_km" );
opt->setOption( "tmstep" );
opt->setOption( "ntsteps" );
opt->setOption( "frame_file_stub" );
opt->setOption( "disp_dirname" );
opt->setOption( "src_spectrum_file" );
opt->setOption( "src_waveform_file" );
opt->setOption( "nfft" );
opt->setOption( "use_attn_file" );
opt->setOption( "c_min" );
opt->setOption( "c_max" );
// Process the command-line arguments
opt->processFile( "./ModBB.options" );
opt->processCommandArgs( argc, argv );
if( ! opt->hasOptions()) { // print usage if no options
opt->printUsage();
delete opt;
exit( 1 );
}
// Check to see if help text was requested
if ( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ) {
opt->printUsage();
exit( 1 );
}
return opt;
}
int main(int argc, char **argv){
// nekonstantni nastaveni generatoru nahodnych cisel
srand((unsigned int)time(0));
// server cast
clock_t t1, t2;
t1 = clock();
int NP = 50;
double F = 0.7;
double CR = 0.6;
int Generations = 10;
int pocet_neuronu = 5;
char *nejlepsi_jedinec = "nejlepsi_jedinec.txt";
char *data = "data.txt";
int tichy = 0;
// parsovani parametru
AnyOption *opt = new AnyOption();
opt->setVerbose(); /* print warnings about unknown options */
opt->autoUsagePrint(true); /* print usage for bad options */
opt->addUsage( "" );
opt->addUsage( "NNSA (Neural Network Space Arcade) - Testovani rekuretni neuronove site na jednoduche arkade" );
opt->addUsage( "" );
opt->addUsage( "Pouziti: " );
opt->addUsage( "" );
opt->addUsage( " -h --help Zobrazi tuto napovedu " );
opt->addUsage( " -n jedinec.txt Nejlepsi jedinec " );
opt->addUsage( " -d data.txt Udaje o jednotlivych generacich " );
opt->addUsage( " " );
opt->addUsage( " --NP 60 Velikost populace " );
opt->addUsage( " --F 0.7 Mutacni konstanta " );
opt->addUsage( " --CR 0.8 Prah krizeni " );
opt->addUsage( " --generations 100 Pocet kol slechteni populace " );
opt->addUsage( " --neurons 4 Pocet neuronu v neuronove siti " );
opt->addUsage( " --quiet 1 Neukecany rezim " );
opt->addUsage( "" );
opt->setFlag( "help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt->setOption('n');
opt->setOption('d');
opt->setOption("NP");
opt->setOption("F");
opt->setOption("CR");
opt->setOption("generations");
opt->setOption("neurons");
opt->setOption("quiet");
opt->processCommandArgs(argc, argv);
NP = atoi(opt->getValue("NP"));
F = atof(opt->getValue("F"));
CR = atof(opt->getValue("CR"));
Generations = atoi(opt->getValue("generations"));
pocet_neuronu = atoi(opt->getValue("neurons"));
nejlepsi_jedinec = opt->getValue('n');
data = opt->getValue('d');
tichy = atoi(opt->getValue("quiet"));
cout << "Parametry diferencialni evoluce:" << endl;
cout << " -> Velikost populace NP = " << NP << endl;
cout << " -> Mutacni konstanta F = " << F << endl;
cout << " -> Prah krizeni CR = " << CR << endl;
cout << " -> Pocet generaci = " << Generations << endl;
cout << " -> Pocet neuronu = " << pocet_neuronu << endl;
DiferencialniEvoluce *d1 = new DiferencialniEvoluce(NP, F, CR, Generations, pocet_neuronu, &ohodnoceni, tichy, data);
d1->UlozNejlepsiJedinec(nejlepsi_jedinec);
// 32bit - pretece cca po 36 minutach
t2 = clock();
cout << "Doba behu programu: " << ((double) (t2 - t1))/CLOCKS_PER_SEC << endl;
return 0;
}