void IsisMain() {
// Create a serial number list
UserInterface &ui = Application::GetUserInterface();
QString filename = ui.GetFileName("FROM");
SerialNumberList serialNumberList;
serialNumberList.Add(filename);
// Get the coordinate for updating the camera pointing
// We will want to make the camera pointing match the lat/lon at this
// line sample
double samp1 = ui.GetDouble("SAMP1");
double line1 = ui.GetDouble("LINE1");
Latitude lat1(ui.GetDouble("LAT1"), Angle::Degrees);
Longitude lon1(ui.GetDouble("LON1"), Angle::Degrees);
Distance rad1;
if(ui.WasEntered("RAD1")) {
rad1 = Distance(ui.GetDouble("RAD1"), Distance::Meters);
}
else {
rad1 = GetRadius(ui.GetFileName("FROM"), lat1, lon1);
}
// In order to use the bundle adjustment class we will need a control
// network
ControlMeasure * m = new ControlMeasure;
m->SetCubeSerialNumber(serialNumberList.SerialNumber(0));
m->SetCoordinate(samp1, line1);
// m->SetType(ControlMeasure::Manual);
m->SetType(ControlMeasure::RegisteredPixel);
ControlPoint * p = new ControlPoint;
p->SetAprioriSurfacePoint(SurfacePoint(lat1, lon1, rad1));
p->SetId("Point1");
p->SetType(ControlPoint::Fixed);
p->Add(m);
ControlNet cnet;
// cnet.SetType(ControlNet::ImageToGround);
cnet.AddPoint(p);
// We need the target body
Cube c;
c.open(filename, "rw");
//check for target name
if(c.label()->hasKeyword("TargetName", PvlObject::Traverse)) {
// c.Label()->findKeyword("TargetName");
PvlGroup inst = c.label()->findGroup("Instrument", PvlObject::Traverse);
QString targetName = inst["TargetName"];
cnet.SetTarget(targetName);
}
c.close();
// See if they wanted to solve for twist
if(ui.GetBoolean("TWIST")) {
double samp2 = ui.GetDouble("SAMP2");
double line2 = ui.GetDouble("LINE2");
Latitude lat2(ui.GetDouble("LAT2"), Angle::Degrees);
Longitude lon2(ui.GetDouble("LON2"), Angle::Degrees);
Distance rad2;
if(ui.WasEntered("RAD2")) {
rad2 = Distance(ui.GetDouble("RAD2"), Distance::Meters);
}
else {
rad2 = GetRadius(ui.GetFileName("FROM"), lat2, lon2);
}
ControlMeasure * m = new ControlMeasure;
m->SetCubeSerialNumber(serialNumberList.SerialNumber(0));
m->SetCoordinate(samp2, line2);
m->SetType(ControlMeasure::Manual);
ControlPoint * p = new ControlPoint;
p->SetAprioriSurfacePoint(SurfacePoint(lat2, lon2, rad2));
p->SetId("Point2");
p->SetType(ControlPoint::Fixed);
p->Add(m);
cnet.AddPoint(p);
}
// Bundle adjust to solve for new pointing
try {
BundleAdjust b(cnet, serialNumberList);
b.SetSolveTwist(ui.GetBoolean("TWIST"));
// double tol = ui.GetDouble("TOL");
//int maxIterations = ui.GetInteger("MAXITS");
//b.Solve(tol, maxIterations);
b.SetSolveCmatrix(BundleAdjust::AnglesOnly);
b.SetSolveSpacecraftPosition(BundleAdjust::Nothing);
b.SetErrorPropagation(false);
b.SetOutlierRejection(false);
b.SetSolutionMethod("SPECIALK");
b.SetStandardOutput(true);
b.SetCSVOutput(false);
b.SetResidualOutput(true);
b.SetConvergenceThreshold(ui.GetDouble("SIGMA0"));
b.SetMaxIterations(ui.GetInteger("MAXITS"));
b.SetDecompositionMethod(BundleAdjust::SPECIALK);
b.SolveCholesky();
Cube c;
c.open(filename, "rw");
//check for existing polygon, if exists delete it
if(c.label()->hasObject("Polygon")) {
c.label()->deleteObject("Polygon");
}
Table cmatrix = b.Cmatrix(0);
// Write out a description in the spice table
QString deltackComment = "deltackAdjusted = " + Isis::iTime::CurrentLocalTime();
cmatrix.Label().addComment(deltackComment);
//PvlKeyword description("Description");
//description = "Camera pointing updated via deltack application";
//cmatrix.Label().findObject("Table",Pvl::Traverse).addKeyword(description);
// Update the cube history
c.write(cmatrix);
History h("IsisCube");
c.read(h);
h.AddEntry();
c.write(h);
c.close();
PvlGroup gp("DeltackResults");
gp += PvlKeyword("Status", "Camera pointing updated");
Application::Log(gp);
}
catch(IException &e) {
QString msg = "Unable to update camera pointing for [" + filename + "]";
throw IException(e, IException::Unknown, msg, _FILEINFO_);
}
}
void IsisMain() {
// Get user interface
UserInterface &ui = Application::GetUserInterface();
bool register_ignored = ui.GetBoolean("REGISTERIGNOREDONLY");
// Open the files list in a SerialNumberList for
// reference by SerialNumber
SerialNumberList files(ui.GetFilename("FILES"));
// Create a ControlNet from the input file
ControlNet inNet(ui.GetFilename("CNET"));
// Create an AutoReg from the template file
Pvl pvl(ui.GetFilename("TEMPLATE"));
AutoReg *ar = AutoRegFactory::Create(pvl);
// Create the output ControlNet
ControlNet outNet;
outNet.SetType(inNet.Type());
outNet.SetUserName(Application::UserName());
outNet.SetDescription(inNet.Description());
outNet.SetCreatedDate(iTime::CurrentLocalTime());
outNet.SetTarget(inNet.Target());
outNet.SetNetworkId(inNet.NetworkId());
Progress progress;
progress.SetMaximumSteps(inNet.Size());
progress.CheckStatus();
int ignored=0, unmeasured=0, registered=0, unregistered=0, validated=0;
CubeManager cubeMgr;
cubeMgr.SetNumOpenCubes(50);
// Register the points and create a new
// ControlNet containing the refined measurements
for (int i=0; i<inNet.Size(); i++) {
ControlPoint &inPoint = inNet[i];
ControlPoint outPoint;
outPoint.SetType(inPoint.Type());
outPoint.SetId(inPoint.Id());
outPoint.SetUniversalGround(inPoint.UniversalLatitude(), inPoint.UniversalLongitude(), inPoint.Radius());
outPoint.SetHeld(inPoint.Held());
outPoint.SetIgnore(inPoint.Ignore());
// CHECK TO SEE IF THE CONTROL POINT SHOULD BE REGISTERED
// "Ignore" point and we are not registering ignored
if (inPoint.Ignore() && !register_ignored){
ignored++;
// add "Ignored" to network only if indicated
if (ui.GetBoolean("OUTPUTIGNORED")) {
// only include appropriate control measures
for (int j = 0; j < inPoint.Size(); j++) {
if (inPoint[j].IsMeasured()){
outPoint.Add(inPoint[j]);
}
else{
unmeasured++;
if (ui.GetBoolean("OUTPUTUNMEASURED")){
outPoint.Add(inPoint[j]);
}
}
}
// only add this point if OUTPUTIGNORED
outNet.Add(outPoint);
}
// go to next control point
continue;
}
// Not "Ignore" point (i.e. "valid") and we are only registering "Ignored"
else if (!inPoint.Ignore() && register_ignored) {
// add all "valid" points to network
// only include appropriate control measures
for (int j = 0; j < inPoint.Size(); j++) {
if (inPoint[j].IsMeasured()){
outPoint.Add(inPoint[j]);
}
else{
unmeasured++;
if (ui.GetBoolean("OUTPUTUNMEASURED")) {
outPoint.Add(inPoint[j]);
}
}
}
// add this point since it is not ignored
outNet.Add(outPoint);
// go to next control point
continue;
}
// "Ignore" point or "valid" point to be registered
else { // if ( (inPoint.Ignore() && register_ignored) || (!inPoint.Ignore() && !register_ignored ) ) {
if (inPoint.Ignore()) { outPoint.SetIgnore(false); }
ControlMeasure &patternCM = inPoint[inPoint.ReferenceIndex()];
Cube &patternCube = *cubeMgr.OpenCube(files.Filename(patternCM.CubeSerialNumber()));
ar->PatternChip()->TackCube(patternCM.Sample(), patternCM.Line());
ar->PatternChip()->Load(patternCube);
if (patternCM.IsValidated()) validated++;
if (!patternCM.IsMeasured()) continue;
if(!patternCM.IsReference()) {
patternCM.SetReference(true);
patternCM.SetChooserName("Application pointreg");
patternCM.SetDateTime();
}
outPoint.Add(patternCM);
// reset goodMeasureCount for this point before looping measures
int goodMeasureCount = 0;
// Register all the unvalidated measurements
for (int j = 0; j < inPoint.Size(); j++) {
// don't register the reference, go to next measure
if (j == inPoint.ReferenceIndex()){
if (!inPoint[j].Ignore()) goodMeasureCount++;
continue;
}
// if the measurement is valid, keep it as is and go to next measure
if (inPoint[j].IsValidated()) {
validated++;
outPoint.Add(inPoint[j]);
if (!inPoint[j].Ignore()) goodMeasureCount++;
continue;
}
// if the point is unmeasured, add to output only if necessary and go to next measure
if (!inPoint[j].IsMeasured()) {
unmeasured++;
if (ui.GetBoolean("OUTPUTUNMEASURED")) {
outPoint.Add(inPoint[j]);
}
continue;
}
ControlMeasure searchCM = inPoint[j];
// refresh pattern cube pointer to ensure it stays valid
Cube &patternCube = *cubeMgr.OpenCube(files.Filename(patternCM.CubeSerialNumber()));
Cube &searchCube = *cubeMgr.OpenCube(files.Filename(searchCM.CubeSerialNumber()));
ar->SearchChip()->TackCube(searchCM.Sample(), searchCM.Line());
try {
ar->SearchChip()->Load(searchCube,*(ar->PatternChip()),patternCube);
// If the measurements were correctly registered
// Write them to the new ControlNet
AutoReg::RegisterStatus res = ar->Register();
double score1, score2;
ar->ZScores(score1, score2);
searchCM.SetZScores(score1, score2);
if(res == AutoReg::Success) {
registered++;
searchCM.SetType(ControlMeasure::Automatic);
searchCM.SetError(searchCM.Sample() - ar->CubeSample(), searchCM.Line() - ar->CubeLine());
searchCM.SetCoordinate(ar->CubeSample(),ar->CubeLine());
searchCM.SetGoodnessOfFit(ar->GoodnessOfFit());
searchCM.SetChooserName("Application pointreg");
searchCM.SetDateTime();
searchCM.SetIgnore(false);
outPoint.Add(searchCM);
goodMeasureCount++;
}
// Else use the original marked as "Estimated"
else {
unregistered++;
searchCM.SetType(ControlMeasure::Estimated);
if(res == AutoReg::FitChipToleranceNotMet) {
searchCM.SetError(inPoint[j].Sample() - ar->CubeSample(), inPoint[j].Line() - ar->CubeLine());
searchCM.SetGoodnessOfFit(ar->GoodnessOfFit());
}
searchCM.SetChooserName("Application pointreg");
searchCM.SetDateTime();
searchCM.SetIgnore(true);
outPoint.Add(searchCM);
}
} catch (iException &e) {
e.Clear();
unregistered++;
searchCM.SetType(ControlMeasure::Estimated);
searchCM.SetChooserName("Application pointreg");
searchCM.SetDateTime();
searchCM.SetIgnore(true);
outPoint.Add(searchCM);
}
}
// Jeff Anderson put in this test (Dec 2, 2008) to allow for control
// points to be good so long as at least two measure could be
// registered. When a measure can't be registered to the reference then
// that measure is set to be ignored where in the past the whole point
// was ignored
if (goodMeasureCount < 2) {
if (!outPoint.Held() && outPoint.Type() != ControlPoint::Ground) {
outPoint.SetIgnore(true);
}
}
// Otherwise, ignore=false. This is already set at the beginning of the registration process
// Check to see if the control point has now been assigned
// to "ignore". If not, add it to the network. If so, only
// add it to the output if the OUTPUTIGNORED parameter is selected
// 2008-11-14 Jeannie Walldren
if (!outPoint.Ignore()) {
outNet.Add(outPoint);
}
else{
ignored++;
if (ui.GetBoolean("OUTPUTIGNORED")) outNet.Add(outPoint);
}
}
progress.CheckStatus();
}
// If flatfile was entered, create the flatfile
// The flatfile is comma seperated and can be imported into an excel
// spreadsheet
if (ui.WasEntered("FLATFILE")) {
string fFile = Filename(ui.GetFilename("FLATFILE")).Expanded();
ofstream os;
os.open(fFile.c_str(),ios::out);
os << "PointId,OriginalMeasurementSample,OriginalMeasurementLine," <<
"RegisteredMeasurementSample,RegisteredMeasurementLine,SampleDifference," <<
"LineDifference,ZScoreMin,ZScoreMax,GoodnessOfFit" << endl;
os << NULL8 << endl;
for (int i=0; i<outNet.Size(); i++) {
// get point from output control net and its
// corresponding point from input control net
ControlPoint outPoint = outNet[i];
ControlPoint *inPoint = inNet.Find(outPoint.Id());
if (outPoint.Ignore()) continue;
for (int i = 0; i<outPoint.Size();i++) {
// get measure and find its corresponding measure from input net
ControlMeasure cmTrans = outPoint[i];
ControlMeasure cmOrig = (*inPoint)[cmTrans.CubeSerialNumber()];
double inSamp = cmOrig.Sample();
double inLine = cmOrig.Line();
double outSamp = cmTrans.Sample();
double outLine = cmTrans.Line();
double sampErr = cmTrans.SampleError();
double lineErr = cmTrans.LineError();
double zScoreMin = cmTrans.GetZScoreMin();
if (fabs(zScoreMin) <= DBL_EPSILON || zScoreMin == NULL8) zScoreMin = 0;
double zScoreMax = cmTrans.GetZScoreMax();
if (fabs(zScoreMax) <= DBL_EPSILON || zScoreMax == NULL8) zScoreMax = 0;
double goodnessOfFit = cmTrans.GoodnessOfFit();
if (fabs(goodnessOfFit) <= DBL_EPSILON || goodnessOfFit == NULL8) goodnessOfFit = 0;
string pointId = outPoint.Id();
os << pointId << "," << inSamp << ","
<< inLine << "," << outSamp << ","
<< outLine << "," << sampErr << ","
<< lineErr << "," << zScoreMin << ","
<< zScoreMax << "," << goodnessOfFit << endl;
}
}
}
PvlGroup pLog("Points");
pLog+=PvlKeyword("Ignored", ignored);
Application::Log(pLog);
PvlGroup mLog("Measures");
mLog+=PvlKeyword("Validated", validated);
mLog+=PvlKeyword("Registered", registered);
mLog+=PvlKeyword("Unregistered", unregistered);
mLog+=PvlKeyword("Unmeasured", unmeasured);
Application::Log(mLog);
// Log Registration Statistics
Pvl arPvl = ar->RegistrationStatistics();
for(int i = 0; i < arPvl.Groups(); i++) {
Application::Log(arPvl.Group(i));
}
// add the auto registration information to print.prt
PvlGroup autoRegTemplate = ar->RegTemplate();
Application::Log(autoRegTemplate);
outNet.Write(ui.GetFilename("TO"));
delete ar;
}
