Exemplos de PeakMap::getSourceFiles em C++ (Cpp)

Exemplo n.º 1

Arquivo: FileHandler_test.cpp Projeto: burlab/OpenMS

tmp.getOptions() = PeakFileOptions();
TEST_EQUAL(tmp.loadExperiment(OPENMS_GET_TEST_DATA_PATH("MzXMLFile_1.mzXML"), exp), true)
TEST_REAL_SIMILAR(exp[2][0].getPosition()[0], 100)
TEST_REAL_SIMILAR(exp[2][1].getPosition()[0], 110)
TEST_REAL_SIMILAR(exp[2][2].getPosition()[0], 120)

tmp.getOptions().setMZRange(DRange<1>(115, 1000));
TEST_EQUAL(tmp.loadExperiment(OPENMS_GET_TEST_DATA_PATH("MzXMLFile_1.mzXML"), exp), true)
TEST_REAL_SIMILAR(exp[2][0].getPosition()[0], 120)
TEST_REAL_SIMILAR(exp[2][1].getPosition()[0], 130)
TEST_REAL_SIMILAR(exp[2][2].getPosition()[0], 140)

tmp.getOptions() = PeakFileOptions();
TEST_EQUAL(tmp.loadExperiment(OPENMS_GET_TEST_DATA_PATH("MzMLFile_1.mzML"), exp), true)
TEST_EQUAL(exp.size(), 4)
TEST_STRING_EQUAL(exp.getSourceFiles()[0].getChecksum(), "310e4e89e3caa41ff6d79ee578522f47514ba9d6")
TEST_EQUAL(exp.getSourceFiles()[0].getChecksumType(), SourceFile::SHA1)

tmp.getOptions() = PeakFileOptions();
TEST_EQUAL(tmp.loadExperiment(OPENMS_GET_TEST_DATA_PATH("DTA2DFile_test_1.dta2d"), exp), true)
TEST_REAL_SIMILAR(exp[0][0].getPosition()[0], 230.02)
TEST_REAL_SIMILAR(exp[0][1].getPosition()[0], 430.02)
TEST_REAL_SIMILAR(exp[0][2].getPosition()[0], 630.02)

tmp.getOptions().setMZRange(DRange<1>(300, 1000));
TEST_EQUAL(tmp.loadExperiment(OPENMS_GET_TEST_DATA_PATH("DTA2DFile_test_1.dta2d"), exp), true)
TEST_REAL_SIMILAR(exp[0][0].getPosition()[0], 430.02)
TEST_REAL_SIMILAR(exp[0][1].getPosition()[0], 630.02)
TEST_STRING_EQUAL(exp.getSourceFiles()[0].getChecksum(), "d50d5144cc3805749b9e8d16f3bc8994979d8142")
TEST_EQUAL(exp.getSourceFiles()[0].getChecksumType(), SourceFile::SHA1)

Exemplo n.º 2

Arquivo: MzDataFile_test.cpp Projeto: FabianAicheler/OpenMS

  TEST_REAL_SIMILAR(e[2].getFloatDataArrays()[4][4], 100)
  TEST_REAL_SIMILAR(e[2].getFloatDataArrays()[3][4], 100)
  TEST_EQUAL(e[2].getFloatDataArrays()[5][4], 100)
  TEST_REAL_SIMILAR(e[2].getFloatDataArrays()[0][4], 100)
  TEST_REAL_SIMILAR(e[2].getFloatDataArrays()[7][4], 100)
  TEST_EQUAL(e[2].getFloatDataArrays()[6][4], 100)

  //---------------------------------------------------------------------------
  // accession number
  //---------------------------------------------------------------------------
  TEST_EQUAL(e.getIdentifier(), "lsid");

  //---------------------------------------------------------------------------
  // source file
  //---------------------------------------------------------------------------
  TEST_EQUAL(e.getSourceFiles().size(), 1)
  TEST_STRING_EQUAL(e.getSourceFiles()[0].getNameOfFile(), "MzDataFile_test_1.raw");
  TEST_STRING_EQUAL(e.getSourceFiles()[0].getPathToFile(), "/share/data/");
  TEST_STRING_EQUAL(e.getSourceFiles()[0].getFileType(), "MS");
  TEST_STRING_EQUAL(e.getSourceFiles()[0].getChecksum(), "");
  TEST_EQUAL(e.getSourceFiles()[0].getChecksumType(), SourceFile::UNKNOWN_CHECKSUM);

  //---------------------------------------------------------------------------
  // conteact list
  //---------------------------------------------------------------------------
  TEST_EQUAL(e.getContacts().size(), 2);
  ABORT_IF(e.getContacts().size() != 2);
  TEST_EQUAL(e.getContacts()[0].getFirstName(), "John");
  TEST_EQUAL(e.getContacts()[0].getLastName(), "Doe");
  TEST_EQUAL(e.getContacts()[0].getInstitution(), "department 1");
  TEST_EQUAL(e.getContacts()[0].getContactInfo(), "www.john.doe");