VecStr readObjsToVecStr(const std::vector<T> & vec){
VecStr ans;
for(const auto & read : vec){
ans.emplace_back(read.seqBase_.seq_);
}
return ans;
}
VecStr TableReader::extractCols(const VecStr & row, const VecStr & cols) const{
VecStr ret;
ret.reserve(cols.size());
for(const auto & col : cols){
ret.emplace_back(row[header_.getColPos(col)]);
}
return ret;
}
VecStr numVecToVecStr(const std::vector<T>& nums) {
VecStr ans;
ans.reserve(nums.size());
// std::generate_n(ans.begin(), nums.size(), [](const T & num) {return
// estd::to_string(num);});
for (const auto& num : nums) {
ans.emplace_back(estd::to_string(num));
}
return ans;
}
VecStr tokenizeString(const std::string& str, const std::string& delim,
bool addEmptyToEnd = false) {
VecStr output;
if("whitespace" == delim){
std::stringstream tempStream(str);
while (!tempStream.eof()) {
std::string tempName;
tempStream >> tempName;
output.emplace_back(tempName);
}
}else{
TableReader::TableReader(const TableIOOpts & tabOpts): tabOpts_(tabOpts){
//inital header reader
njh::files::checkExistenceThrow(tabOpts_.in_.inFilename_);
std::string currentLine = njh::files::getFirstLine(
tabOpts_.in_.inFilename_);
auto toks = tokenizeString(currentLine, tabOpts_.inDelim_, true);
VecStr columnNames;
if (!tabOpts_.hasHeader_) {
for (const auto i : iter::range(toks.size())) {
columnNames.emplace_back("col." + leftPadNumStr(i, toks.size()));
}
} else {
columnNames = toks;
}
header_ = table(columnNames);
in_ = std::make_unique<InputStream>(tabOpts_.in_);
if(tabOpts_.hasHeader_){
njh::files::crossPlatGetline(*in_, currentLine);
}
}
void addAsStrToVec(VecStr& vec, const std::vector<T>& items) {
for (const auto& e : items) {
vec.emplace_back(estd::to_string(e));
}
}
void addAsStrToVec(VecStr& vec, const T& e) {
vec.emplace_back(estd::to_string(e));
}
