std::unique_ptr<FluidProperties> createFluidProperties(
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{material__fluid__density}
auto const& rho_conf = config.getConfigSubtree("density");
auto liquid_density = MaterialLib::Fluid::createFluidDensityModel(rho_conf);
//! \ogs_file_param{material__fluid__viscosity}
auto const& mu_conf = config.getConfigSubtree("viscosity");
auto viscosity = MaterialLib::Fluid::createViscosityModel(mu_conf);
const bool is_mu_density_dependent =
(viscosity->getName().find("density dependent") != std::string::npos);
bool is_cp_density_dependent = false;
std::unique_ptr<MaterialLib::Fluid::FluidProperty> specific_heat_capacity =
nullptr;
auto heat_capacity__opt_conf =
//! \ogs_file_param{material__fluid__specific_heat_capacity}
config.getConfigSubtreeOptional("specific_heat_capacity");
if (heat_capacity__opt_conf)
{
const auto& heat_capacity_conf = *heat_capacity__opt_conf;
specific_heat_capacity =
createSpecificFluidHeatCapacityModel(heat_capacity_conf);
is_cp_density_dependent =
(specific_heat_capacity->getName().find("density dependent") !=
std::string::npos);
}
bool is_KT_density_dependent = false;
std::unique_ptr<MaterialLib::Fluid::FluidProperty> thermal_conductivity =
nullptr;
auto const& thermal_conductivity_opt_conf =
//! \ogs_file_param{material__fluid__thermal_conductivity}
config.getConfigSubtreeOptional("thermal_conductivity");
if (thermal_conductivity_opt_conf)
{
auto const& thermal_conductivity_conf = *thermal_conductivity_opt_conf;
thermal_conductivity =
MaterialLib::Fluid::createFluidThermalConductivityModel(
thermal_conductivity_conf);
is_KT_density_dependent =
(specific_heat_capacity->getName().find("density dependent") !=
std::string::npos);
}
if (is_mu_density_dependent || is_cp_density_dependent ||
is_KT_density_dependent)
return std::make_unique<
MaterialLib::Fluid::FluidPropertiesWithDensityDependentModels>(
std::move(liquid_density), std::move(viscosity),
std::move(specific_heat_capacity), std::move(thermal_conductivity),
is_mu_density_dependent, is_cp_density_dependent,
is_KT_density_dependent);
return std::make_unique<
MaterialLib::Fluid::PrimaryVariableDependentFluidProperties>(
std::move(liquid_density), std::move(viscosity),
std::move(specific_heat_capacity), std::move(thermal_conductivity));
}
static std::tuple<BoreholeGeometry,
RefrigerantProperties,
GroutParameters,
FlowAndTemperatureControl,
PipeConfigurationCoaxial>
parseBHECoaxialConfig(
BaseLib::ConfigTree const& config,
std::map<std::string,
std::unique_ptr<MathLib::PiecewiseLinearInterpolation>> const&
curves)
{
auto const borehole_geometry =
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__borehole}
createBoreholeGeometry(config.getConfigSubtree("borehole"));
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__pipes}
auto const& pipes_config = config.getConfigSubtree("pipes");
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__pipes__outer}
Pipe const outer_pipe = createPipe(pipes_config.getConfigSubtree("outer"));
Pipe const inner_pipe =
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__pipes__inner}
createPipe(pipes_config.getConfigSubtree("inner"));
const auto pipe_longitudinal_dispersion_length =
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__pipes__longitudinal_dispersion_length}
pipes_config.getConfigParameter<double>(
"longitudinal_dispersion_length");
PipeConfigurationCoaxial const pipes{inner_pipe, outer_pipe,
pipe_longitudinal_dispersion_length};
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__grout}
auto const grout = createGroutParameters(config.getConfigSubtree("grout"));
auto const refrigerant =
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__refrigerant}
createRefrigerantProperties(config.getConfigSubtree("refrigerant"));
auto const flowAndTemperatureControl = createFlowAndTemperatureControl(
//! \ogs_file_param{prj__processes__process__HEAT_TRANSPORT_BHE__borehole_heat_exchangers__borehole_heat_exchanger__flow_and_temperature_control}
config.getConfigSubtree("flow_and_temperature_control"),
curves,
refrigerant);
return {borehole_geometry, refrigerant, grout, flowAndTemperatureControl,
pipes};
}
std::unique_ptr<Process> createGroundwaterFlowProcess(
MeshLib::Mesh& mesh,
Process::NonlinearSolver& nonlinear_solver,
std::unique_ptr<Process::TimeDiscretization>&& time_discretization,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{process__type}
config.checkConfigParameter("type", "GROUNDWATER_FLOW");
DBUG("Create GroundwaterFlowProcess.");
// Process variable.
auto process_variables = findProcessVariables(
variables, config,
{//! \ogs_file_param_special{process__GROUNDWATER_FLOW__process_variables__process_variable}
"process_variable"});
// Hydraulic conductivity parameter.
auto& hydraulic_conductivity = findParameter<double,
MeshLib::Element const&>(
config,
//! \ogs_file_param_special{process__GROUNDWATER_FLOW__hydraulic_conductivity}
"hydraulic_conductivity",
parameters);
DBUG("Use \'%s\' as hydraulic conductivity parameter.",
hydraulic_conductivity.name.c_str());
GroundwaterFlowProcessData process_data{hydraulic_conductivity};
SecondaryVariableCollection secondary_variables{
//! \ogs_file_param{process__secondary_variables}
config.getConfigSubtreeOptional("secondary_variables"),
{//! \ogs_file_param_special{process__GROUNDWATER_FLOW__secondary_variables__darcy_velocity_x}
"darcy_velocity_x",
//! \ogs_file_param_special{process__GROUNDWATER_FLOW__secondary_variables__darcy_velocity_y}
"darcy_velocity_y",
//! \ogs_file_param_special{process__GROUNDWATER_FLOW__secondary_variables__darcy_velocity_z}
"darcy_velocity_z"}};
ProcessOutput
//! \ogs_file_param{process__output}
process_output{config.getConfigSubtree("output"), process_variables,
secondary_variables};
return std::unique_ptr<Process>{new GroundwaterFlowProcess{
mesh, nonlinear_solver, std::move(time_discretization),
std::move(process_variables), std::move(process_data),
std::move(secondary_variables), std::move(process_output)}};
}
ProjectData::ProjectData(BaseLib::ConfigTree const& project_config,
std::string const& project_directory,
std::string const& output_directory)
{
std::string const geometry_file = BaseLib::copyPathToFileName(
//! \ogs_file_param{prj__geometry}
project_config.getConfigParameter<std::string>("geometry"),
project_directory);
detail::readGeometry(geometry_file, *_geoObjects);
{
//! \ogs_file_param{prj__mesh}
auto const mesh_param = project_config.getConfigParameter("mesh");
std::string const mesh_file = BaseLib::copyPathToFileName(
mesh_param.getValue<std::string>(), project_directory);
MeshLib::Mesh* const mesh = MeshLib::IO::readMeshFromFile(mesh_file);
if (!mesh)
{
OGS_FATAL("Could not read mesh from \'%s\' file. No mesh added.",
mesh_file.c_str());
}
if (auto const axially_symmetric =
//! \ogs_file_attr{prj__mesh__axially_symmetric}
mesh_param.getConfigAttributeOptional<bool>("axially_symmetric"))
{
mesh->setAxiallySymmetric(*axially_symmetric);
}
_mesh_vec.push_back(mesh);
}
//! \ogs_file_param{prj__curves}
parseCurves(project_config.getConfigSubtreeOptional("curves"));
//! \ogs_file_param{prj__parameters}
parseParameters(project_config.getConfigSubtree("parameters"));
//! \ogs_file_param{prj__process_variables}
parseProcessVariables(project_config.getConfigSubtree("process_variables"));
//! \ogs_file_param{prj__processes}
parseProcesses(project_config.getConfigSubtree("processes"),
project_directory, output_directory);
//! \ogs_file_param{prj__linear_solvers}
parseLinearSolvers(project_config.getConfigSubtree("linear_solvers"));
//! \ogs_file_param{prj__nonlinear_solvers}
parseNonlinearSolvers(project_config.getConfigSubtree("nonlinear_solvers"));
//! \ogs_file_param{prj__time_loop}
parseTimeLoop(project_config.getConfigSubtree("time_loop"),
output_directory);
}
std::unique_ptr<RelativePermeability> createRelativePermeabilityModel(
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{material__porous_medium__relative_permeability__type}
auto const type = config.peekConfigParameter<std::string>("type");
if (type == "WettingPhaseVanGenuchten")
{
return createWettingPhaseVanGenuchten(config);
}
if (type == "NonWettingPhaseVanGenuchten")
{
return createNonWettingPhaseVanGenuchten(config);
}
if (type == "WettingPhaseBrooksCoreyOilGas")
{
return createWettingPhaseBrooksCoreyOilGas(config);
}
if (type == "NonWettingPhaseBrooksCoreyOilGas")
{
return createNonWettingPhaseBrooksCoreyOilGas(config);
}
if (type == "Curve")
{
//! \ogs_file_param{material__porous_medium__relative_permeability__type}
config.checkConfigParameter("type", "Curve");
//! \ogs_file_param{material__porous_medium__relative_permeability__Curve__curve}
auto const& curve_config = config.getConfigSubtree("curve");
auto curve = MathLib::createPiecewiseLinearCurve<MathLib
::PiecewiseLinearInterpolation>(curve_config);
return std::make_unique<RelativePermeabilityCurve>(std::move(curve));
}
OGS_FATAL(
"The relative permeability model %s is unavailable.\n"
"The available models are:"
"\n\tWettingPhaseVanGenuchten,"
"\n\tNonWettingPhaseVanGenuchten,"
"\n\tWettingPhaseBrooksCoreyOilGas,"
"\n\tNonWettingPhaseBrooksCoreyOilGas,",
"\n\tCurve.\n",
type.data());
}
std::vector<std::reference_wrapper<ProcessVariable>>
findProcessVariables(
std::vector<ProcessVariable> const& variables,
BaseLib::ConfigTree const& process_config,
std::initializer_list<std::string> tag_names)
{
std::vector<std::reference_wrapper<ProcessVariable>> vars;
vars.reserve(tag_names.size());
//! \ogs_file_param{process__process_variables}
auto const pv_conf = process_config.getConfigSubtree("process_variables");
for (auto const& tag : tag_names) {
vars.emplace_back(findProcessVariable(variables, pv_conf, tag));
}
return vars;
}
std::unique_ptr<Process> createTESProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
unsigned const integration_order,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{prj__processes__process__type}
config.checkConfigParameter("type", "TES");
DBUG("Create TESProcess.");
//! \ogs_file_param{prj__processes__process__TES__process_variables}
auto const pv_config = config.getConfigSubtree("process_variables");
auto per_process_variables = findProcessVariables(
variables, pv_config,
{
//! \ogs_file_param_special{prj__processes__process__TES__process_variables__fluid_pressure}
"fluid_pressure",
//! \ogs_file_param_special{prj__processes__process__TES__process_variables__temperature}
"temperature",
//! \ogs_file_param_special{prj__processes__process__TES__process_variables__vapour_mass_fraction}
"vapour_mass_fraction"});
std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>
process_variables;
process_variables.push_back(std::move(per_process_variables));
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller(
{"TES_pressure", "TES_temperature", "TES_vapour_mass_fraction"});
ProcessLib::createSecondaryVariables(config, secondary_variables,
named_function_caller);
return std::make_unique<TESProcess>(
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(secondary_variables),
std::move(named_function_caller), config);
}
std::unique_ptr<TwoPhaseFlowWithPrhoMaterialProperties>
createTwoPhaseFlowPrhoMaterialProperties(
BaseLib::ConfigTree const& config,
boost::optional<MeshLib::PropertyVector<int> const&> material_ids,
std::vector<std::unique_ptr<ParameterBase>> const& parameters)
{
DBUG("Reading material properties of two-phase flow process.");
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__fluid}
auto const& fluid_config = config.getConfigSubtree("fluid");
// Get fluid properties
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__liquid_density}
auto const& rho_conf = fluid_config.getConfigSubtree("liquid_density");
auto _liquid_density =
MaterialLib::Fluid::createFluidDensityModel(rho_conf);
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__gas_density}
auto const& rho_gas_conf = fluid_config.getConfigSubtree("gas_density");
auto _gas_density =
MaterialLib::Fluid::createFluidDensityModel(rho_gas_conf);
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__liquid_viscosity}
auto const& mu_conf = fluid_config.getConfigSubtree("liquid_viscosity");
auto _viscosity = MaterialLib::Fluid::createViscosityModel(mu_conf);
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__gas_viscosity}
auto const& mu_gas_conf = fluid_config.getConfigSubtree("gas_viscosity");
auto _gas_viscosity = MaterialLib::Fluid::createViscosityModel(mu_gas_conf);
// Get porous properties
std::vector<int> mat_ids;
std::vector<int> mat_krel_ids;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Permeability>>
_intrinsic_permeability_models;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Porosity>>
_porosity_models;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Storage>>
_storage_models;
std::vector<
std::unique_ptr<MaterialLib::PorousMedium::CapillaryPressureSaturation>>
_capillary_pressure_models;
std::vector<
std::unique_ptr<MaterialLib::PorousMedium::RelativePermeability>>
_relative_permeability_models;
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium}
auto const& poro_config = config.getConfigSubtree("porous_medium");
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium}
for (auto const& conf : poro_config.getConfigSubtreeList("porous_medium"))
{
//! \ogs_file_attr{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__id}
auto const id = conf.getConfigAttributeOptional<int>("id");
mat_ids.push_back(*id);
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__permeability}
auto const& permeability_conf = conf.getConfigSubtree("permeability");
_intrinsic_permeability_models.emplace_back(
MaterialLib::PorousMedium::createPermeabilityModel(
permeability_conf, parameters));
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__porosity}
auto const& porosity_conf = conf.getConfigSubtree("porosity");
auto n = MaterialLib::PorousMedium::createPorosityModel(porosity_conf,
parameters);
_porosity_models.emplace_back(std::move(n));
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__storage}
auto const& storage_conf = conf.getConfigSubtree("storage");
auto beta = MaterialLib::PorousMedium::createStorageModel(storage_conf);
_storage_models.emplace_back(std::move(beta));
auto const& capillary_pressure_conf =
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__capillary_pressure}
conf.getConfigSubtree("capillary_pressure");
auto pc = MaterialLib::PorousMedium::createCapillaryPressureModel(
capillary_pressure_conf);
_capillary_pressure_models.emplace_back(std::move(pc));
auto const& krel_config =
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__relative_permeability}
conf.getConfigSubtree("relative_permeability");
for (
auto const& krel_conf :
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__relative_permeability__relative_permeability}
krel_config.getConfigSubtreeList("relative_permeability"))
{
auto const krel_id =
//! \ogs_file_attr{prj__processes__process__TWOPHASE_FLOW_PRHO__material_property__porous_medium__porous_medium__relative_permeability__relative_permeability__id}
krel_conf.getConfigAttributeOptional<int>("id");
mat_krel_ids.push_back(*krel_id);
auto krel_n =
MaterialLib::PorousMedium::createRelativePermeabilityModel(
krel_conf);
_relative_permeability_models.emplace_back(std::move(krel_n));
}
BaseLib::reorderVector(_relative_permeability_models, mat_krel_ids);
}
BaseLib::reorderVector(_intrinsic_permeability_models, mat_ids);
BaseLib::reorderVector(_porosity_models, mat_ids);
BaseLib::reorderVector(_storage_models, mat_ids);
return std::make_unique<TwoPhaseFlowWithPrhoMaterialProperties>(
material_ids, std::move(_liquid_density), std::move(_viscosity),
std::move(_gas_density), std::move(_gas_viscosity),
std::move(_intrinsic_permeability_models), std::move(_porosity_models),
std::move(_storage_models), std::move(_capillary_pressure_models),
std::move(_relative_permeability_models));
}
std::unique_ptr<Process> createTwoPhaseFlowWithPPProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
unsigned const integration_order,
BaseLib::ConfigTree const& config,
std::map<std::string,
std::unique_ptr<MathLib::PiecewiseLinearInterpolation>> const&
curves)
{
//! \ogs_file_param{prj__processes__process__type}
config.checkConfigParameter("type", "TWOPHASE_FLOW_PP");
DBUG("Create TwoPhaseFlowProcess with PP model.");
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PP__process_variables}
auto const pv_config = config.getConfigSubtree("process_variables");
auto per_process_variables = findProcessVariables(
variables, pv_config,
{//! \ogs_file_param_special{prj__processes__process__TWOPHASE_FLOW_PP__process_variables__gas_pressure}
"gas_pressure",
//! \ogs_file_param_special{prj__processes__process__TWOPHASE_FLOW_PP__process_variables__capillary_pressure}
"capillary_pressure"});
std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>
process_variables;
process_variables.push_back(std::move(per_process_variables));
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller(
{"TwoPhaseFlow_pressure"});
ProcessLib::createSecondaryVariables(config, secondary_variables,
named_function_caller);
// Specific body force
std::vector<double> const b =
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PP__specific_body_force}
config.getConfigParameter<std::vector<double>>("specific_body_force");
assert(!b.empty() && b.size() < 4);
Eigen::VectorXd specific_body_force(b.size());
bool const has_gravity = MathLib::toVector(b).norm() > 0;
if (has_gravity)
std::copy_n(b.data(), b.size(), specific_body_force.data());
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PP__mass_lumping}
auto const mass_lumping = config.getConfigParameter<bool>("mass_lumping");
auto& temperature = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__TWOPHASE_FLOW_PP__temperature}
"temperature", parameters, 1);
//! \ogs_file_param{prj__processes__process__TWOPHASE_FLOW_PP__material_property}
auto const& mat_config = config.getConfigSubtree("material_property");
auto const material_ids = materialIDs(mesh);
if (material_ids)
{
INFO("The twophase flow is in heterogeneous porous media.");
}
else
{
INFO("The twophase flow is in homogeneous porous media.");
}
std::unique_ptr<TwoPhaseFlowWithPPMaterialProperties> material =
createTwoPhaseFlowWithPPMaterialProperties(mat_config, material_ids,
parameters);
TwoPhaseFlowWithPPProcessData process_data{
specific_body_force, has_gravity, mass_lumping, temperature, std::move(material)};
return std::make_unique<TwoPhaseFlowWithPPProcess>(
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(process_data),
std::move(secondary_variables), std::move(named_function_caller),
mat_config, curves);
}
std::unique_ptr<Process> createSmallDeformationProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterLib::ParameterBase>> const& parameters,
boost::optional<ParameterLib::CoordinateSystem> const&
local_coordinate_system,
unsigned const integration_order,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{prj__processes__process__type}
config.checkConfigParameter("type", "SMALL_DEFORMATION_WITH_LIE");
DBUG("Create SmallDeformationProcess with LIE.");
// Process variables
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__process_variables}
auto const pv_conf = config.getConfigSubtree("process_variables");
auto range =
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__process_variables__process_variable}
pv_conf.getConfigParameterList<std::string>("process_variable");
std::vector<std::reference_wrapper<ProcessVariable>> per_process_variables;
std::size_t n_var_du = 0;
for (std::string const& pv_name : range)
{
if (pv_name != "displacement" && pv_name.find("displacement_jump") != 0)
{
OGS_FATAL(
"Found a process variable name '%s'. It should be "
"'displacement' or 'displacement_jumpN' or "
"'displacement_junctionN'");
}
if (pv_name.find("displacement_jump") == 0)
{
n_var_du++;
}
auto variable = std::find_if(variables.cbegin(), variables.cend(),
[&pv_name](ProcessVariable const& v) {
return v.getName() == pv_name;
});
if (variable == variables.end())
{
OGS_FATAL(
"Could not find process variable '%s' in the provided "
"variables "
"list for config tag <%s>.",
pv_name.c_str(), "process_variable");
}
DBUG("Found process variable '%s' for config tag <%s>.",
variable->getName().c_str(), "process_variable");
per_process_variables.emplace_back(
const_cast<ProcessVariable&>(*variable));
}
if (n_var_du < 1)
{
OGS_FATAL("No displacement jump variables are specified");
}
DBUG("Associate displacement with process variable '%s'.",
per_process_variables.back().get().getName().c_str());
if (per_process_variables.back().get().getNumberOfComponents() !=
DisplacementDim)
{
OGS_FATAL(
"Number of components of the process variable '%s' is different "
"from the displacement dimension: got %d, expected %d",
per_process_variables.back().get().getName().c_str(),
per_process_variables.back().get().getNumberOfComponents(),
DisplacementDim);
}
std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>
process_variables;
process_variables.push_back(std::move(per_process_variables));
auto solid_constitutive_relations =
MaterialLib::Solids::createConstitutiveRelations<DisplacementDim>(
parameters, local_coordinate_system, config);
// Fracture constitutive relation.
// read type;
auto const fracture_model_config =
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__fracture_model}
config.getConfigSubtree("fracture_model");
auto const frac_type =
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__fracture_model__type}
fracture_model_config.peekConfigParameter<std::string>("type");
std::unique_ptr<MaterialLib::Fracture::FractureModelBase<DisplacementDim>>
fracture_model = nullptr;
if (frac_type == "LinearElasticIsotropic")
{
fracture_model = MaterialLib::Fracture::createLinearElasticIsotropic<
DisplacementDim>(parameters, fracture_model_config);
}
else if (frac_type == "MohrCoulomb")
{
fracture_model =
MaterialLib::Fracture::createMohrCoulomb<DisplacementDim>(
parameters, fracture_model_config);
}
else if (frac_type == "CohesiveZoneModeI")
{
fracture_model =
MaterialLib::Fracture::CohesiveZoneModeI::createCohesiveZoneModeI<
DisplacementDim>(parameters, fracture_model_config);
}
else
{
OGS_FATAL(
"Cannot construct fracture constitutive relation of given type "
"'%s'.",
frac_type.c_str());
}
// Fracture properties
std::vector<FractureProperty> fracture_properties;
for (
auto fracture_properties_config :
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__fracture_properties}
config.getConfigSubtreeList("fracture_properties"))
{
fracture_properties.emplace_back(
fracture_properties.size(),
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__fracture_properties__material_id}
fracture_properties_config.getConfigParameter<int>("material_id"),
ParameterLib::findParameter<double>(
//! \ogs_file_param_special{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__fracture_properties__initial_aperture}
fracture_properties_config, "initial_aperture", parameters, 1));
}
if (n_var_du < fracture_properties.size())
{
OGS_FATAL(
"The number of displacement jumps and the number of "
"<fracture_properties> "
"are not consistent");
}
// Reference temperature
const auto& reference_temperature =
//! \ogs_file_param{prj__processes__process__SMALL_DEFORMATION_WITH_LIE__reference_temperature}
config.getConfigParameter<double>(
"reference_temperature", std::numeric_limits<double>::quiet_NaN());
SmallDeformationProcessData<DisplacementDim> process_data(
materialIDs(mesh), std::move(solid_constitutive_relations),
std::move(fracture_model), std::move(fracture_properties),
reference_temperature);
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller(
{"SmallDeformation_displacement"});
ProcessLib::createSecondaryVariables(config, secondary_variables,
named_function_caller);
return std::make_unique<SmallDeformationProcess<DisplacementDim>>(
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(process_data),
std::move(secondary_variables), std::move(named_function_caller));
}
std::unique_ptr<Process> createLiquidFlowProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
unsigned const integration_order,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{process__type}
config.checkConfigParameter("type", "LIQUID_FLOW");
DBUG("Create LiquidFlowProcess.");
// Process variable.
auto process_variables = findProcessVariables(
variables, config,
{//! \ogs_file_param_special{process__LIQUID_FLOW__process_variables__process_variable}
"process_variable"});
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller({"LiquidFlow_pressure"});
ProcessLib::parseSecondaryVariables(config, secondary_variables,
named_function_caller);
// Get the gravity vector for the Darcy velocity
//! \ogs_file_param{process__LIQUID_FLOW__darcy_gravity}
auto const& darcy_g_config = config.getConfigSubtree("darcy_gravity");
const int gravity_axis_id_input =
//! \ogs_file_param_special{process__LIQUID_FLOW__darcy_gravity_axis_id}
darcy_g_config.getConfigParameter<int>("axis_id");
assert(gravity_axis_id_input < static_cast<int>(mesh.getDimension()));
const double g =
//! \ogs_file_param_special{process__LIQUID_FLOW__darcy_gravity_g}
darcy_g_config.getConfigParameter<double>("g");
assert(g >= 0.);
const int gravity_axis_id = (g == 0.) ? -1 : gravity_axis_id_input;
//! \ogs_file_param{process__LIQUID_FLOW__material_property}
auto const& mat_config = config.getConfigSubtree("material_property");
auto const& mat_ids =
mesh.getProperties().getPropertyVector<int>("MaterialIDs");
if (mat_ids)
{
INFO("The liquid flow is in heterogeneous porous media.");
const bool has_material_ids = true;
return std::unique_ptr<Process>{new LiquidFlowProcess{
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(secondary_variables),
std::move(named_function_caller), *mat_ids, has_material_ids,
gravity_axis_id, g, mat_config}};
}
else
{
INFO("The liquid flow is in homogeneous porous media.");
MeshLib::Properties dummy_property;
// For a reference argument of LiquidFlowProcess(...).
auto const& dummy_property_vector =
dummy_property.createNewPropertyVector<int>(
"MaterialIDs", MeshLib::MeshItemType::Cell, 1);
// Since dummy_property_vector is only visible in this function,
// the following constant, has_material_ids, is employed to indicate
// that material_ids does not exist.
const bool has_material_ids = false;
return std::unique_ptr<Process>{new LiquidFlowProcess{
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(secondary_variables),
std::move(named_function_caller), *dummy_property_vector,
has_material_ids, gravity_axis_id, g, mat_config}};
}
}
std::unique_ptr<RichardsFlowMaterialProperties>
createRichardsFlowMaterialProperties(
BaseLib::ConfigTree const& config,
MeshLib::PropertyVector<int> const* const material_ids,
std::vector<std::unique_ptr<ParameterBase>> const& parameters)
{
DBUG("Reading material properties of Richards flow process.");
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__fluid}
auto const& fluid_config = config.getConfigSubtree("fluid");
auto fluid_properties =
MaterialLib::Fluid::createFluidProperties(fluid_config);
// Get porous properties
std::vector<int> mat_ids;
std::vector<int> mat_krel_ids;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Permeability>>
intrinsic_permeability_models;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Porosity>>
porosity_models;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Storage>>
storage_models;
std::vector<
std::unique_ptr<MaterialLib::PorousMedium::CapillaryPressureSaturation>>
capillary_pressure_models;
std::vector<
std::unique_ptr<MaterialLib::PorousMedium::RelativePermeability>>
relative_permeability_models;
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium}
auto const& poro_config = config.getConfigSubtree("porous_medium");
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium}
for (auto const& conf : poro_config.getConfigSubtreeList("porous_medium"))
{
//! \ogs_file_attr{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium__id}
auto const id = conf.getConfigAttributeOptional<int>("id");
mat_ids.push_back(*id);
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium__permeability}
auto const& permeability_conf = conf.getConfigSubtree("permeability");
intrinsic_permeability_models.emplace_back(
MaterialLib::PorousMedium::createPermeabilityModel(
permeability_conf, parameters));
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium__porosity}
auto const& porosity_conf = conf.getConfigSubtree("porosity");
auto n = MaterialLib::PorousMedium::createPorosityModel(porosity_conf,
parameters);
porosity_models.emplace_back(std::move(n));
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium__storage}
auto const& storage_conf = conf.getConfigSubtree("storage");
auto beta = MaterialLib::PorousMedium::createStorageModel(storage_conf);
storage_models.emplace_back(std::move(beta));
auto const& capillary_pressure_conf =
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium__capillary_pressure}
conf.getConfigSubtree("capillary_pressure");
auto pc = MaterialLib::PorousMedium::createCapillaryPressureModel(
capillary_pressure_conf);
capillary_pressure_models.emplace_back(std::move(pc));
auto const& krel_config =
//! \ogs_file_param{prj__processes__process__RICHARDS_FLOW__material_property__porous_medium__porous_medium__relative_permeability}
conf.getConfigSubtree("relative_permeability");
auto krel = MaterialLib::PorousMedium::createRelativePermeabilityModel(
krel_config);
relative_permeability_models.emplace_back(std::move(krel));
}
BaseLib::reorderVector(intrinsic_permeability_models, mat_ids);
BaseLib::reorderVector(porosity_models, mat_ids);
BaseLib::reorderVector(storage_models, mat_ids);
return std::unique_ptr<RichardsFlowMaterialProperties>{
new RichardsFlowMaterialProperties{
material_ids, std::move(fluid_properties),
std::move(intrinsic_permeability_models),
std::move(porosity_models), std::move(storage_models),
std::move(capillary_pressure_models),
std::move(relative_permeability_models)}};
}
std::unique_ptr<Process> createPhaseFieldProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
unsigned const integration_order,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{prj__processes__process__type}
config.checkConfigParameter("type", "PHASE_FIELD");
DBUG("Create PhaseFieldProcess.");
auto const staggered_scheme =
//! \ogs_file_param{prj__processes__process__PHASE_FIELD__coupling_scheme}
config.getConfigParameterOptional<std::string>("coupling_scheme");
const bool use_monolithic_scheme =
!(staggered_scheme && (*staggered_scheme == "staggered"));
// Process variable.
//! \ogs_file_param{prj__processes__process__PHASE_FIELD__process_variables}
auto const pv_config = config.getConfigSubtree("process_variables");
ProcessVariable* variable_ph;
ProcessVariable* variable_u;
std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>
process_variables;
if (use_monolithic_scheme) // monolithic scheme.
{
auto per_process_variables = findProcessVariables(
variables, pv_config,
{//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__process_variables__phasefield}
"phasefield",
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__process_variables__displacement}
"displacement"});
variable_ph = &per_process_variables[0].get();
variable_u = &per_process_variables[1].get();
process_variables.push_back(std::move(per_process_variables));
}
else // staggered scheme.
{
using namespace std::string_literals;
for (auto const& variable_name : {"phasefield"s, "displacement"s})
{
auto per_process_variables =
findProcessVariables(variables, pv_config, {variable_name});
process_variables.push_back(std::move(per_process_variables));
}
variable_ph = &process_variables[0][0].get();
variable_u = &process_variables[1][0].get();
}
DBUG("Associate displacement with process variable \'%s\'.",
variable_u->getName().c_str());
if (variable_u->getNumberOfComponents() != DisplacementDim)
{
OGS_FATAL(
"Number of components of the process variable '%s' is different "
"from the displacement dimension: got %d, expected %d",
variable_u->getName().c_str(),
variable_u->getNumberOfComponents(),
DisplacementDim);
}
DBUG("Associate phase field with process variable \'%s\'.",
variable_ph->getName().c_str());
if (variable_ph->getNumberOfComponents() != 1)
{
OGS_FATAL(
"Pressure process variable '%s' is not a scalar variable but has "
"%d components.",
variable_ph->getName().c_str(),
variable_ph->getNumberOfComponents());
}
// Constitutive relation.
// read type;
auto const constitutive_relation_config =
//! \ogs_file_param{prj__processes__process__PHASE_FIELD__constitutive_relation}
config.getConfigSubtree("constitutive_relation");
auto const phasefield_parameters_config =
//! \ogs_file_param{prj__processes__process__PHASE_FIELD__phasefield_parameters}
config.getConfigSubtree("phasefield_parameters");
auto const type =
//! \ogs_file_param{prj__processes__process__PHASE_FIELD__constitutive_relation__type}
constitutive_relation_config.peekConfigParameter<std::string>("type");
std::unique_ptr<MaterialLib::Solids::PhaseFieldExtension<DisplacementDim>>
material = nullptr;
if (type == "LinearElasticIsotropic")
{
auto elastic_model = MaterialLib::Solids::createLinearElasticIsotropic<
DisplacementDim>(parameters, constitutive_relation_config);
material =
std::make_unique<MaterialLib::Solids::LinearElasticIsotropicPhaseField<
DisplacementDim>>(std::move(elastic_model->getMaterialProperties()));
}
else
{
OGS_FATAL(
"Cannot construct constitutive relation of given type \'%s\'.",
type.c_str());
}
// Residual stiffness
auto& residual_stiffness = findParameter<double>(
phasefield_parameters_config,
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__phasefield_parameters__residual_stiffness}
"residual_stiffness", parameters, 1);
DBUG("Use \'%s\' as residual stiffness.", residual_stiffness.name.c_str());
// Crack resistance
auto& crack_resistance = findParameter<double>(
phasefield_parameters_config,
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__phasefield_parameters__crack_resistance}
"crack_resistance", parameters, 1);
DBUG("Use \'%s\' as crack resistance.", crack_resistance.name.c_str());
// Crack length scale
auto& crack_length_scale = findParameter<double>(
phasefield_parameters_config,
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__phasefield_parameters__crack_length_scale}
"crack_length_scale", parameters, 1);
DBUG("Use \'%s\' as crack length scale.", crack_length_scale.name.c_str());
// Kinetic coefficient
auto& kinetic_coefficient = findParameter<double>(
phasefield_parameters_config,
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__phasefield_parameters__kinetic_coefficient}
"kinetic_coefficient", parameters, 1);
DBUG("Use \'%s\' as kinetic coefficient.",
kinetic_coefficient.name.c_str());
// Solid density
auto& solid_density = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__solid_density}
"solid_density", parameters, 1);
DBUG("Use \'%s\' as solid density parameter.", solid_density.name.c_str());
// History field
auto& history_field = findParameter<double>(
phasefield_parameters_config,
//! \ogs_file_param_special{prj__processes__process__PHASE_FIELD__phasefield_parameters__history_field}
"history_field", parameters, 1);
DBUG("Use \'%s\' as history field.", history_field.name.c_str());
// Specific body force
Eigen::Matrix<double, DisplacementDim, 1> specific_body_force;
{
std::vector<double> const b =
//! \ogs_file_param{prj__processes__process__PHASE_FIELD__specific_body_force}
config.getConfigParameter<std::vector<double>>(
"specific_body_force");
if (b.size() != DisplacementDim)
OGS_FATAL(
"The size of the specific body force vector does not match the "
"displacement dimension. Vector size is %d, displacement "
"dimension is %d",
b.size(), DisplacementDim);
std::copy_n(b.data(), b.size(), specific_body_force.data());
}
PhaseFieldProcessData<DisplacementDim> process_data{
std::move(material), residual_stiffness, crack_resistance,
crack_length_scale, kinetic_coefficient, solid_density,
history_field, specific_body_force};
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller(
{"PhaseField_displacement"});
ProcessLib::createSecondaryVariables(config, secondary_variables,
named_function_caller);
return std::make_unique<PhaseFieldProcess<DisplacementDim>>(
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(process_data),
std::move(secondary_variables), std::move(named_function_caller),
use_monolithic_scheme);
}
std::unique_ptr<Process> createHydroMechanicsProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
unsigned const integration_order,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{prj__processes__process__type}
config.checkConfigParameter("type", "HYDRO_MECHANICS");
DBUG("Create HydroMechanicsProcess.");
// Process variable.
//! \ogs_file_param{prj__processes__process__HYDRO_MECHANICS__process_variables}
auto const pv_config = config.getConfigSubtree("process_variables");
auto process_variables = findProcessVariables(
variables, pv_config,
{ //! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__process_variables__pressure}
"pressure",
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__process_variables__displacement}
"displacement"
});
DBUG("Associate displacement with process variable \'%s\'.",
process_variables[1].get().getName().c_str());
if (process_variables[1].get().getNumberOfComponents() !=
DisplacementDim)
{
OGS_FATAL(
"Number of components of the process variable '%s' is different "
"from the displacement dimension: got %d, expected %d",
process_variables[1].get().getName().c_str(),
process_variables[1].get().getNumberOfComponents(),
DisplacementDim);
}
DBUG("Associate pressure with process variable \'%s\'.",
process_variables[0].get().getName().c_str());
if (process_variables[0].get().getNumberOfComponents() != 1)
{
OGS_FATAL(
"Pressure process variable '%s' is not a scalar variable but has "
"%d components.",
process_variables[0].get().getName().c_str(),
process_variables[0].get().getNumberOfComponents());
}
// Constitutive relation.
// read type;
auto const constitutive_relation_config =
//! \ogs_file_param{prj__processes__process__HYDRO_MECHANICS__constitutive_relation}
config.getConfigSubtree("constitutive_relation");
auto const type =
//! \ogs_file_param{prj__processes__process__HYDRO_MECHANICS__constitutive_relation__type}
constitutive_relation_config.peekConfigParameter<std::string>("type");
std::unique_ptr<MaterialLib::Solids::MechanicsBase<DisplacementDim>>
material = nullptr;
if (type == "LinearElasticIsotropic")
{
material =
MaterialLib::Solids::createLinearElasticIsotropic<DisplacementDim>(
parameters, constitutive_relation_config);
}
else
{
OGS_FATAL(
"Cannot construct constitutive relation of given type \'%s\'.",
type.c_str());
}
// Intrinsic permeability
auto& intrinsic_permeability = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__intrinsic_permeability}
"intrinsic_permeability",
parameters, 1);
DBUG("Use \'%s\' as intrinsic conductivity parameter.",
intrinsic_permeability.name.c_str());
// Storage coefficient
auto& specific_storage = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__specific_storage}
"specific_storage", parameters, 1);
DBUG("Use \'%s\' as storage coefficient parameter.",
specific_storage.name.c_str());
// Fluid viscosity
auto& fluid_viscosity = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__fluid_viscosity}
"fluid_viscosity",
parameters, 1);
DBUG("Use \'%s\' as fluid viscosity parameter.",
fluid_viscosity.name.c_str());
// Fluid density
auto& fluid_density = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__fluid_density}
"fluid_density",
parameters, 1);
DBUG("Use \'%s\' as fluid density parameter.",
fluid_density.name.c_str());
// Biot coefficient
auto& biot_coefficient = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__biot_coefficient}
"biot_coefficient",
parameters, 1);
DBUG("Use \'%s\' as Biot coefficient parameter.",
biot_coefficient.name.c_str());
// Porosity
auto& porosity = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__porosity}
"porosity",
parameters, 1);
DBUG("Use \'%s\' as porosity parameter.",
porosity.name.c_str());
// Solid density
auto& solid_density = findParameter<double>(
config,
//! \ogs_file_param_special{prj__processes__process__HYDRO_MECHANICS__solid_density}
"solid_density",
parameters, 1);
DBUG("Use \'%s\' as solid density parameter.",
solid_density.name.c_str());
// Specific body force
Eigen::Matrix<double, DisplacementDim, 1> specific_body_force;
{
std::vector<double> const b =
//! \ogs_file_param{prj__processes__process__HYDRO_MECHANICS__specific_body_force}
config.getConfigParameter<std::vector<double>>(
"specific_body_force");
if (specific_body_force.size() != DisplacementDim)
OGS_FATAL(
"The size of the specific body force vector does not match the "
"displacement dimension. Vector size is %d, displacement "
"dimension is %d",
specific_body_force.size(), DisplacementDim);
std::copy_n(b.data(), b.size(), specific_body_force.data());
}
HydroMechanicsProcessData<DisplacementDim> process_data{
std::move(material),
intrinsic_permeability,
specific_storage,
fluid_viscosity,
fluid_density,
biot_coefficient,
porosity,
solid_density,
specific_body_force};
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller(
{"HydroMechanics_displacement"});
ProcessLib::parseSecondaryVariables(config, secondary_variables,
named_function_caller);
return std::unique_ptr<HydroMechanicsProcess<DisplacementDim>> {
new HydroMechanicsProcess<DisplacementDim>{
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(process_data),
std::move(secondary_variables), std::move(named_function_caller)
}
};
}
std::unique_ptr<Process>
createSmallDeformationProcess(
MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<ProcessVariable> const& variables,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
unsigned const integration_order,
BaseLib::ConfigTree const& config)
{
//! \ogs_file_param{process__type}
config.checkConfigParameter("type", "SMALL_DEFORMATION_WITH_LIE");
DBUG("Create SmallDeformationProcess with LIE.");
// Process variables
auto const pv_conf = config.getConfigSubtree("process_variables");
auto range = pv_conf.getConfigParameterList<std::string>("process_variable");
std::vector<std::reference_wrapper<ProcessVariable>> process_variables;
for (std::string const& pv_name : range)
{
if (pv_name != "displacement"
&& pv_name.find("displacement_jump")==std::string::npos)
OGS_FATAL("Found a process variable name '%s'. It should be 'displacement' or 'displacement_jumpN'");
auto variable = std::find_if(
variables.cbegin(), variables.cend(),
[&pv_name](ProcessVariable const& v) { return v.getName() == pv_name; });
if (variable == variables.end())
{
OGS_FATAL(
"Could not find process variable '%s' in the provided variables "
"list for config tag <%s>.",
pv_name.c_str(), "process_variable");
}
DBUG("Found process variable \'%s\' for config tag <%s>.",
variable->getName().c_str(), "process_variable");
process_variables.emplace_back(const_cast<ProcessVariable&>(*variable));
}
if (process_variables.size() > 2)
OGS_FATAL("Currently only one displacement jump is supported");
DBUG("Associate displacement with process variable \'%s\'.",
process_variables.back().get().getName().c_str());
if (process_variables.back().get().getNumberOfComponents() !=
DisplacementDim)
{
OGS_FATAL(
"Number of components of the process variable '%s' is different "
"from the displacement dimension: got %d, expected %d",
process_variables.back().get().getName().c_str(),
process_variables.back().get().getNumberOfComponents(),
DisplacementDim);
}
// Constitutive relation.
// read type;
auto const constitutive_relation_config =
//! \ogs_file_param{process__SMALL_DEFORMATION_WITH_LIE__constitutive_relation}
config.getConfigSubtree("constitutive_relation");
auto const type =
constitutive_relation_config.peekConfigParameter<std::string>("type");
std::unique_ptr<MaterialLib::Solids::MechanicsBase<DisplacementDim>> material = nullptr;
if (type == "LinearElasticIsotropic")
{
material = MaterialLib::Solids::createLinearElasticIsotropic<DisplacementDim>(
parameters, constitutive_relation_config);
}
else
{
OGS_FATAL(
"Cannot construct constitutive relation of given type \'%s\'.",
type.c_str());
}
// Fracture constitutive relation.
// read type;
auto const fracture_constitutive_relation_config =
//! \ogs_file_param{process__SMALL_DEFORMATION_WITH_LIE__constitutive_relation}
config.getConfigSubtree("fracture_constitutive_relation");
auto const frac_type =
fracture_constitutive_relation_config.peekConfigParameter<std::string>("type");
std::unique_ptr<MaterialLib::Fracture::FractureModelBase<DisplacementDim>> fracture_model = nullptr;
if (frac_type == "LinearElasticIsotropic")
{
fracture_model = MaterialLib::Fracture::createLinearElasticIsotropic<DisplacementDim>(
parameters, fracture_constitutive_relation_config);
}
else if (frac_type == "MohrCoulomb")
{
fracture_model = MaterialLib::Fracture::createMohrCoulomb<DisplacementDim>(
parameters, fracture_constitutive_relation_config);
}
else
{
OGS_FATAL(
"Cannot construct fracture constitutive relation of given type \'%s\'.",
frac_type.c_str());
}
// Fracture properties
//! \ogs_file_param{process__SMALL_DEFORMATION_WITH_LIE__fracture_properties}
auto fracture_properties_config = config.getConfigSubtree("fracture_properties");
auto ¶_b0 = ProcessLib::findParameter<double>(fracture_properties_config, "initial_aperture", parameters, 1);
std::unique_ptr<FractureProperty> frac_prop(new FractureProperty());
frac_prop->mat_id = fracture_properties_config.getConfigParameter<int>("material_id");
frac_prop->aperture0 = ¶_b0;
SmallDeformationProcessData<DisplacementDim> process_data(
std::move(material), std::move(fracture_model), std::move(frac_prop));
SecondaryVariableCollection secondary_variables;
NumLib::NamedFunctionCaller named_function_caller(
{"SmallDeformation_displacement"});
ProcessLib::parseSecondaryVariables(config, secondary_variables,
named_function_caller);
return std::unique_ptr<SmallDeformationProcess<DisplacementDim>>{
new SmallDeformationProcess<DisplacementDim>{
mesh, std::move(jacobian_assembler), parameters, integration_order,
std::move(process_variables), std::move(process_data),
std::move(secondary_variables), std::move(named_function_caller)}};
}
TESProcess::TESProcess(
MeshLib::Mesh& mesh,
Process::NonlinearSolver& nonlinear_solver,
std::unique_ptr<Process::TimeDiscretization>&&
time_discretization,
std::vector<std::reference_wrapper<ProcessVariable>>&& process_variables,
SecondaryVariableCollection&& secondary_variables,
ProcessOutput&& process_output,
const BaseLib::ConfigTree& config)
: Process(
mesh, nonlinear_solver, std::move(time_discretization),
std::move(process_variables), std::move(secondary_variables),
std::move(process_output))
{
DBUG("Create TESProcess.");
// physical parameters for local assembly
{
std::vector<std::pair<std::string, double*>> params{
{"fluid_specific_heat_source",
&_assembly_params.fluid_specific_heat_source},
{"fluid_specific_isobaric_heat_capacity", &_assembly_params.cpG},
{"solid_specific_heat_source",
&_assembly_params.solid_specific_heat_source},
{"solid_heat_conductivity", &_assembly_params.solid_heat_cond},
{"solid_specific_isobaric_heat_capacity", &_assembly_params.cpS},
{"tortuosity", &_assembly_params.tortuosity},
{"diffusion_coefficient",
&_assembly_params.diffusion_coefficient_component},
{"porosity", &_assembly_params.poro},
{"solid_density_dry", &_assembly_params.rho_SR_dry},
{"solid_density_initial", &_assembly_params.initial_solid_density}};
for (auto const& p : params)
{
if (auto const par = config.getConfigParameterOptional<double>(p.first))
{
DBUG("setting parameter `%s' to value `%g'", p.first.c_str(),
*par);
*p.second = *par;
}
}
}
// characteristic values of primary variables
{
std::vector<std::pair<std::string, Trafo*>> const params{
{"characteristic_pressure", &_assembly_params.trafo_p},
{"characteristic_temperature", &_assembly_params.trafo_T},
{"characteristic_vapour_mass_fraction", &_assembly_params.trafo_x}};
for (auto const& p : params)
{
if (auto const par = config.getConfigParameterOptional<double>(p.first))
{
INFO("setting parameter `%s' to value `%g'", p.first.c_str(),
*par);
*p.second = Trafo{*par};
}
}
}
// permeability
if (auto par =
config.getConfigParameterOptional<double>("solid_hydraulic_permeability"))
{
DBUG(
"setting parameter `solid_hydraulic_permeability' to isotropic "
"value `%g'",
*par);
const auto dim = mesh.getDimension();
_assembly_params.solid_perm_tensor =
Eigen::MatrixXd::Identity(dim, dim) * (*par);
}
// reactive system
_assembly_params.react_sys = Adsorption::AdsorptionReaction::newInstance(
config.getConfigSubtree("reactive_system"));
// debug output
if (auto const param =
config.getConfigParameterOptional<bool>("output_element_matrices"))
{
DBUG("output_element_matrices: %s", (*param) ? "true" : "false");
_assembly_params.output_element_matrices = *param;
}
// TODO somewhere else
/*
if (auto const param =
config.getConfigParameterOptional<bool>("output_global_matrix"))
{
DBUG("output_global_matrix: %s", (*param) ? "true" : "false");
this->_process_output.output_global_matrix = *param;
}
*/
}
std::unique_ptr<LiquidFlowMaterialProperties>
createLiquidFlowMaterialProperties(
BaseLib::ConfigTree const& config,
std::vector<std::unique_ptr<ParameterBase>> const& parameters,
bool const has_material_ids,
MeshLib::PropertyVector<int> const& material_ids)
{
DBUG("Reading material properties of liquid flow process.");
//! \ogs_file_param{prj__processes__process__LIQUID_FLOW__material_property__fluid}
auto const& fluid_config = config.getConfigSubtree("fluid");
auto fluid_properties =
MaterialLib::Fluid::createFluidProperties(fluid_config);
// Get porous properties
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Permeability>>
intrinsic_permeability_models;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Porosity>>
porosity_models;
std::vector<std::unique_ptr<MaterialLib::PorousMedium::Storage>>
storage_models;
std::vector<int> mat_ids;
auto const& porous_medium_configs =
//! \ogs_file_param{prj__processes__process__LIQUID_FLOW__material_property__porous_medium}
config.getConfigSubtree("porous_medium");
for (
auto const& porous_medium_config :
//! \ogs_file_param{prj__processes__process__LIQUID_FLOW__material_property__porous_medium__porous_medium}
porous_medium_configs.getConfigSubtreeList("porous_medium"))
{
//! \ogs_file_attr{prj__processes__process__LIQUID_FLOW__material_property__porous_medium__porous_medium__id}
auto const id = porous_medium_config.getConfigAttribute<int>("id");
mat_ids.push_back(id);
auto const& permeability_config =
//! \ogs_file_param{prj__processes__process__LIQUID_FLOW__material_property__porous_medium__porous_medium__permeability}
porous_medium_config.getConfigSubtree("permeability");
intrinsic_permeability_models.emplace_back(
MaterialLib::PorousMedium::createPermeabilityModel(
permeability_config, parameters));
auto const& porosity_config =
//! \ogs_file_param{prj__processes__process__LIQUID_FLOW__material_property__porous_medium__porous_medium__porosity}
porous_medium_config.getConfigSubtree("porosity");
auto n = MaterialLib::PorousMedium::createPorosityModel(porosity_config,
parameters);
porosity_models.emplace_back(std::move(n));
auto const& storage_config =
//! \ogs_file_param{prj__processes__process__LIQUID_FLOW__material_property__porous_medium__porous_medium__storage}
porous_medium_config.getConfigSubtree("storage");
auto beta =
MaterialLib::PorousMedium::createStorageModel(storage_config);
storage_models.emplace_back(std::move(beta));
}
BaseLib::reorderVector(intrinsic_permeability_models, mat_ids);
BaseLib::reorderVector(porosity_models, mat_ids);
BaseLib::reorderVector(storage_models, mat_ids);
return std::make_unique<LiquidFlowMaterialProperties>(
std::move(fluid_properties), std::move(intrinsic_permeability_models),
std::move(porosity_models), std::move(storage_models), has_material_ids,
material_ids);
}