int main(int argc, char *argv[])
{
std::cout << log(10.0) << std::endl;
// Initialize MPI
#ifdef HAVE_MPI
MPI_Init(&argc,&argv);
#endif
// Create a communicator for Epetra objects
#ifdef HAVE_MPI
Epetra_MpiComm Comm( MPI_COMM_WORLD );
#else
Epetra_SerialComm Comm;
#endif
Teuchos::CommandLineProcessor clp( false );
// Default run-time options that can be changed from the command line
bool verbose = true ;
bool restart = false ;
int NumGlobalElementsUO2 = 2001 ;
int NumGlobalElementsHe = 2001 ;
int NumGlobalElementsClad = 2001 ;
// Physical parameters
double qdot = 2.0e8 ;
double xB = 0.02 ;
double xminUO2 = 0.0 ;
double xmaxUO2 = 0.0043 ;
double xminHe = 0.0043 ;
double xmaxHe = 0.00433 ;
double xminClad = 0.00433 ;
double xmaxClad = 0.00483 ;
clp.setOption( "verbose", "no-verbose", &verbose, "Verbosity on or off." );
clp.setOption( "restart", "no-restart", &restart, "Restart from previous solution." );
clp.setOption( "nUO2", &NumGlobalElementsUO2, "Number of elements in UO2 domain" );
clp.setOption( "nHe", &NumGlobalElementsHe, "Number of elements in He domain" );
clp.setOption( "nClad", &NumGlobalElementsClad, "Number of elements in Cladding domain" );
clp.setOption( "qdot", &qdot, "Source term coefficient, Qdot" );
clp.setOption( "xB", &xB, "Non-stoichiometry at outer surface of fuel rod, xB" );
clp.setOption( "xminUO2", &xminUO2, "Left boundary location of UO2 domain (m)" );
clp.setOption( "xmaxUO2", &xmaxUO2, "Right boundary location of UO2 domain (m)" );
clp.setOption( "xminHe", &xminHe, "Left boundary location of He domain (m)" );
clp.setOption( "xmaxHe", &xmaxHe, "Right boundary location of He domain (m)" );
clp.setOption( "xminClad", &xminClad, "Left boundary location of Cladding domain (m)" );
clp.setOption( "xmaxClad", &xmaxClad, "Right boundary location of Cladding domain (m)" );
Teuchos::CommandLineProcessor::EParseCommandLineReturn parse_return = clp.parse(argc,argv);
if( parse_return != Teuchos::CommandLineProcessor::PARSE_SUCCESSFUL )
return parse_return;
// Create and reset the Timer
Epetra_Time myTimer(Comm);
double startWallTime = myTimer.WallTime();
// Get the process ID and the total number of processors
int MyPID = Comm.MyPID();
int NumProc = Comm.NumProc();
// The number of unknowns must be at least equal to the
// number of processors.
//if (NumGlobalNodes < NumProc)
//{
// std::cout << "numGlobalNodes = " << NumGlobalNodes << " cannot be < number of processors = " << NumProc << std::endl;
// std::cout << "Test failed!" << std::endl;
// exit(1);
//}
// Create the PelletTransport problem class. This creates all required
// Epetra objects for the problem and allows calls to the
// function (F) and Jacobian evaluation routines.
Teuchos::RCP<PelletTransport> Problem =
Teuchos::rcp(new PelletTransport(
NumGlobalElementsUO2 , xminUO2 , xmaxUO2 ,
NumGlobalElementsHe , xminHe , xmaxHe ,
NumGlobalElementsClad , xminClad , xmaxClad ,
Comm, restart) );
// Get the vector from the Problem
Teuchos::RCP<Epetra_Vector> soln = Problem->getSolution();
NOX::Epetra::Vector noxSoln(soln, NOX::Epetra::Vector::CreateView);
// Plug in the needed material models
MaterialPropBase * propEnity;
propEnity = MaterialPropFactory::factory().add_model( new MaterialProp_He() );
propEnity = MaterialPropFactory::factory().add_model( new MaterialProp_Clad() );
propEnity = MaterialPropFactory::factory().add_model( new MaterialProp_UO2() );
dynamic_cast<MaterialProp_UO2 *>(propEnity)->set_qdot( qdot );
dynamic_cast<MaterialProp_UO2 *>(propEnity)->set_xB( xB );
// Begin Nonlinear Solver ************************************
// Create the top level parameter list
Teuchos::RCP<Teuchos::ParameterList> nlParamsPtr =
Teuchos::rcp(new Teuchos::ParameterList);
Teuchos::ParameterList& nlParams = *(nlParamsPtr.get());
// Set the nonlinear solver method
nlParams.set("Nonlinear Solver", "Line Search Based");
//nlParams.set("Nonlinear Solver", "Trust Region Based");
// Set the printing parameters in the "Printing" sublist
Teuchos::ParameterList& printParams = nlParams.sublist("Printing");
if (verbose) {
printParams.set("MyPID", MyPID);
printParams.set("Output Precision", 3);
printParams.set("Output Processor", 0);
printParams.set("Output Information",
NOX::Utils::OuterIteration +
NOX::Utils::OuterIterationStatusTest +
NOX::Utils::InnerIteration +
NOX::Utils::LinearSolverDetails +
NOX::Utils::Parameters +
NOX::Utils::Details +
NOX::Utils::Warning);
}
else
printParams.set("Output Information", NOX::Utils::Error);
// Create a print handle object
NOX::Utils utils(printParams);
// Sublist for line search
Teuchos::ParameterList& searchParams = nlParams.sublist("Line Search");
searchParams.set("Method", "Full Step");
// Sublist for direction
Teuchos::ParameterList& dirParams = nlParams.sublist("Direction");
dirParams.set("Method", "Newton");
Teuchos::ParameterList& newtonParams = dirParams.sublist("Newton");
newtonParams.set("Forcing Term Method", "Constant");
// Sublist for linear solver for the Newton method
Teuchos::ParameterList& lsParams = newtonParams.sublist("Linear Solver");
lsParams.set("Aztec Solver", "GMRES");
lsParams.set("Max Iterations", 800);
lsParams.set("Tolerance", 1e-4);
lsParams.set("Output Frequency", 100);
lsParams.set("Preconditioner", "AztecOO");
// Create the interface between the test problem and the nonlinear solver
Teuchos::RCP<Problem_Interface> interface =
Teuchos::rcp(new Problem_Interface(*Problem));
#ifndef HAVE_NOX_EPETRAEXT
utils.out() << "Cannot use Coloring without package epetraext !!!!" << std::endl;
utils.out() << "Test passed!" << std::endl;
exit(0);
#else
// Create a timer for performance
Epetra_Time fillTime(Comm);
EpetraExt::CrsGraph_MapColoring::ColoringAlgorithm algType =
EpetraExt::CrsGraph_MapColoring::JONES_PLASSMAN;
bool colorParallel = true;
int reordering = 0;
int verbosityLevel = 0;
bool distance1 = false;
EpetraExt::CrsGraph_MapColoring tmpMapColoring(
algType, reordering, distance1, verbosityLevel);
Teuchos::RCP<Epetra_MapColoring> colorMap =
Teuchos::rcp(&tmpMapColoring(*(Problem->getGraph())));
EpetraExt::CrsGraph_MapColoringIndex colorMapIndex(*colorMap);
Teuchos::RCP< std::vector<Epetra_IntVector> > columns =
Teuchos::rcp(&colorMapIndex(*(Problem->getGraph())));
Teuchos::RCP<NOX::Epetra::Interface::Required> iReq = interface;
Teuchos::RCP<NOX::Epetra::FiniteDifferenceColoring> FDC =
Teuchos::rcp(new NOX::Epetra::FiniteDifferenceColoring(printParams,
iReq,
noxSoln,
Problem->getGraph(),
colorMap,
columns,
colorParallel,
distance1));
if (verbose)
printf("\n[%d]\tTime to color Jacobian --> %e sec. for %d colors.\n\n",
MyPID,fillTime.ElapsedTime(), colorMap->NumColors());
FDC->setDifferenceMethod(NOX::Epetra::FiniteDifference::Centered);
// -------------- End of block needed to use coloring --------------- */
// Create the Linear System
Teuchos::RCP<NOX::Epetra::Interface::Jacobian> iJac = FDC;
Teuchos::RCP<NOX::Epetra::LinearSystemAztecOO> linSys =
Teuchos::rcp(new NOX::Epetra::LinearSystemAztecOO(printParams, lsParams,
iReq, iJac, FDC,
noxSoln));
// Create the Group
Teuchos::RCP<NOX::Epetra::Group> grpPtr =
Teuchos::rcp(new NOX::Epetra::Group(printParams,
iReq,
noxSoln,
linSys));
NOX::Epetra::Group& grp = *(grpPtr.get());
// Create the convergence tests
Teuchos::RCP<NOX::StatusTest::NormF> absresid =
Teuchos::rcp(new NOX::StatusTest::NormF(1.0e-5, NOX::StatusTest::NormF::Unscaled));
Teuchos::RCP<NOX::StatusTest::MaxIters> maxiters =
Teuchos::rcp(new NOX::StatusTest::MaxIters(25));
Teuchos::RCP<NOX::StatusTest::FiniteValue> finiteval =
Teuchos::rcp(new NOX::StatusTest::FiniteValue());
Teuchos::RCP<NOX::StatusTest::Combo> combo =
Teuchos::rcp(new NOX::StatusTest::Combo(NOX::StatusTest::Combo::OR));
combo->addStatusTest(absresid);
combo->addStatusTest(maxiters);
combo->addStatusTest(finiteval);
// Create the method
Teuchos::RCP<NOX::Solver::Generic> solver =
NOX::Solver::buildSolver(grpPtr, combo, nlParamsPtr);
// Initialize time integration parameters
int maxTimeSteps = 1;
int timeStep = 0;
double time = 100.;
double dt = Problem->getdt();
// Print initial solution
char file_name[25];
FILE *ifp;
Epetra_Vector& xMesh = *(Problem->getMesh());
int NumMyNodes = xMesh.Map().NumMyElements();
(void) sprintf(file_name, "output.%d_%d",MyPID,timeStep);
ifp = fopen(file_name, "w");
for( int i = 0; i < NumMyNodes; ++i )
fprintf(ifp, "%d %E %E %E\n", xMesh.Map().MinMyGID()+i,
xMesh[i], (*soln)[2*i], (*soln)[2*i+1]);
fclose(ifp);
NOX::StatusTest::StatusType status = NOX::StatusTest::Unconverged;
// Time integration loop
while(timeStep < maxTimeSteps) {
timeStep++;
time += dt;
if (verbose)
utils.out() << "Time Step: " << timeStep << ",\tTime: " << time << std::endl;
status = NOX::StatusTest::Unconverged;
status = solver->solve();
if (verbose)
if (status != NOX::StatusTest::Converged)
if (MyPID==0)
utils.out() << "Nonlinear solver failed to converge!" << std::endl;
// Get the Epetra_Vector with the final solution from the solver
const NOX::Epetra::Group& finalGroup =
dynamic_cast<const NOX::Epetra::Group&>(solver->getSolutionGroup());
const Epetra_Vector& finalSolution =
(dynamic_cast<const NOX::Epetra::Vector&>(finalGroup.getX())).getEpetraVector();
// Get the Epetra_Vector with the last residual from the solver
const Epetra_Vector& finalResidual =
(dynamic_cast<const NOX::Epetra::Vector&>(finalGroup.getF())).getEpetraVector();
// End Nonlinear Solver **************************************
if( 1 )
{
// Print solution
(void) sprintf(file_name, "T_output.%03d_%05d",MyPID,timeStep);
ifp = fopen(file_name, "w");
for( int i = 0; i < NumMyNodes; ++i )
fprintf(ifp, "%d %E %E\n", soln->Map().MinMyGID()+i,
xMesh[i], finalSolution[2*i]);
fclose(ifp);
(void) sprintf(file_name, "x_output.%03d_%05d",MyPID,timeStep);
ifp = fopen(file_name, "w");
for( int i = 0; i < NumGlobalElementsUO2 + 1; ++i )
fprintf(ifp, "%d %E %E\n", soln->Map().MinMyGID()+i,
xMesh[i], finalSolution[2*i+1]);
fclose(ifp);
// Print residual
(void) sprintf(file_name, "residual.%03d_%05d",MyPID,timeStep);
ifp = fopen(file_name, "w");
for( int i = 0; i < NumMyNodes; ++i )
fprintf(ifp, "%d %E %E %E\n", soln->Map().MinMyGID()+i,
xMesh[i], finalResidual[2*i],
finalResidual[2*i+1]);
fclose(ifp);
NOX::Epetra::DebugTools::writeVector( "restartVec", finalSolution, NOX::Epetra::DebugTools::MATRIX_MARKET );
}
utils.out() << "Time Step: " << timeStep << ",\tTime: " << time << ", Tmax = " << finalSolution[0] << ", Xmax = " << finalSolution[1] << std::endl;
Problem->reset(finalSolution);
grp.setX(finalSolution);
solver->reset(grp.getX(), combo);
grp.computeF();
} // end time step while loop
const Epetra_Vector& finalSolution = (dynamic_cast<const NOX::Epetra::Vector&>(grp.getX())).getEpetraVector();
NOX::Epetra::DebugTools::writeVector( "transient_restartVec", finalSolution, NOX::Epetra::DebugTools::MATRIX_MARKET );
// Output the parameter list
if (verbose) {
if (utils.isPrintType(NOX::Utils::Parameters)) {
utils.out() << std::endl << "Final Parameters" << std::endl
<< "****************" << std::endl;
solver->getList().print(utils.out());
utils.out() << std::endl;
}
}
// Output timing info
if (verbose)
{
if(MyPID==0)
utils.out() << "\nTimings :\n\tWallTime --> " << myTimer.WallTime() - startWallTime << " sec."
<< "\n\tElapsedTime --> " << myTimer.ElapsedTime()
<< " sec." << std::endl << std::endl;
}
#ifdef HAVE_MPI
MPI_Finalize();
#endif
// Final return value (0 = successfull, non-zero = failure)
return 0;
#endif // HAVE_NOX_EPETRAEXT
}
