void dslashReference(sFloat *res, gFloat **gaugeFull, gFloat **ghostGauge, sFloat *spinorField,
sFloat **fwdSpinor, sFloat **backSpinor, int oddBit, int daggerBit) {
for (int i=0; i<Vh*mySpinorSiteSize; i++) res[i] = 0.0;
gFloat *gaugeEven[4], *gaugeOdd[4];
gFloat *ghostGaugeEven[4], *ghostGaugeOdd[4];
for (int dir = 0; dir < 4; dir++) {
gaugeEven[dir] = gaugeFull[dir];
gaugeOdd[dir] = gaugeFull[dir]+Vh*gaugeSiteSize;
ghostGaugeEven[dir] = ghostGauge[dir];
ghostGaugeOdd[dir] = ghostGauge[dir] + (faceVolume[dir]/2)*gaugeSiteSize;
}
for (int i = 0; i < Vh; i++) {
for (int dir = 0; dir < 8; dir++) {
gFloat *gauge = gaugeLink_mg4dir(i, dir, oddBit, gaugeEven, gaugeOdd, ghostGaugeEven, ghostGaugeOdd, 1, 1);
sFloat *spinor = spinorNeighbor_mg4dir(i, dir, oddBit, spinorField, fwdSpinor, backSpinor, 1, 1);
sFloat projectedSpinor[mySpinorSiteSize], gaugedSpinor[mySpinorSiteSize];
int projIdx = 2*(dir/2)+(dir+daggerBit)%2;
multiplySpinorByDiracProjector(projectedSpinor, projIdx, spinor);
for (int s = 0; s < 4; s++) {
if (dir % 2 == 0) su3Mul(&gaugedSpinor[s*(3*2)], gauge, &projectedSpinor[s*(3*2)]);
else su3Tmul(&gaugedSpinor[s*(3*2)], gauge, &projectedSpinor[s*(3*2)]);
}
sum(&res[i*(4*3*2)], &res[i*(4*3*2)], gaugedSpinor, 4*3*2);
}
}
}
void SmearJacobireference(sFloat *res, gFloat **gaugeFull, sFloat *spinorField, double r, int steps) {
sFloat *tmpSpinor = (sFloat *)malloc(V*spinorSiteSize*sizeof(sFloat));
sFloat *spinorIn, *spinorOut, *tmp;
//Copy the contents of original spinor into tmpSpinor
xeqy(tmpSpinor, spinorField, V*spinorSiteSize);
spinorIn = tmpSpinor;
spinorOut = res;
gFloat *gaugeEven[4], *gaugeOdd[4];
for (int dir = 0; dir < 4; dir++) {
gaugeEven[dir] = gaugeFull[dir];
gaugeOdd[dir] = gaugeFull[dir]+Vh*gaugeSiteSize;
}
for(int iter = 0; iter < steps; iter++) {
xeqay(spinorOut, 1/(1+6*r), spinorIn, V*spinorSiteSize);
for (int oddBit = 0; oddBit < 2; oddBit++) {
for (int i = 0; i < Vh; i++) {
int fullindex = oddBit*Vh + i;
//Spatial smearing only
for (int dir = 0; dir < 6; dir++) {
gFloat *gauge = gaugeLink(i, dir, oddBit, gaugeEven, gaugeOdd, 1);
sFloat *spinor = spinorNeighborFullLattice(fullindex, dir, spinorIn, 1);
sFloat gaugedSpinor[4*3*2];
for (int s = 0; s < 4; s++) {
if (dir % 2 == 0) su3Mul(&gaugedSpinor[s*(3*2)], gauge, &spinor[s*(3*2)]);
else su3Tmul(&gaugedSpinor[s*(3*2)], gauge, &spinor[s*(3*2)]);
}
//Accumulate result from gaugedSpinor into spinorOut
xpeqay(&spinorOut[fullindex*(4*3*2)], r/(1+6*r), gaugedSpinor, 4*3*2);
}
}
}
//Swap the pointers
tmp = spinorIn;
spinorIn = spinorOut;
spinorOut = tmp;
}
//Copy the contents of spinorIn into res, unless res already points to
//spinorIn
if(spinorIn != res) {
xeqy(res, spinorIn, V*spinorSiteSize);
}
free(tmpSpinor);
}
