int SimulationRunner::callMdrun() { CommandLine caller; caller.append("mdrun"); return callMdrun(caller); }
int MdrunTestFixture::callMdrun() { CommandLine caller; caller.append("mdrun"); return callMdrun(caller); }
void MdrunComparisonFixture::runTest(const char *simulationName, const char *integrator, const char *tcoupl, const char *pcoupl, FloatingPointTolerance tolerance) { CommandLine caller; caller.append("grompp"); runTest(caller, simulationName, integrator, tcoupl, pcoupl, tolerance); }
int SimulationRunner::callGromppOnThisRank() { CommandLine caller; caller.append("grompp"); caller.addOption("-f", mdpInputFileName_); caller.addOption("-n", ndxFileName_); caller.addOption("-p", topFileName_); caller.addOption("-c", groFileName_); caller.addOption("-po", mdpOutputFileName_); caller.addOption("-o", tprFileName_); return gmx_grompp(caller.argc(), caller.argv()); }