void DownloadRemoteFileDialog::accept()
{
defaultDB = getDBId();
QString resourceId = getResourceId();
if( resourceId.isEmpty() ) {
QMessageBox::critical(this, L10N::errorTitle(), tr("Resource id is empty!"));
ui->idLineEdit->setFocus();
return;
}
QString fullPath = getFullpath();
if( ui->saveFilenameLineEdit->text().isEmpty() ) {
QMessageBox::critical(this, L10N::errorTitle(), tr("No folder selected for saving file!"));
ui->saveFilenameLineEdit->setFocus();
return;
}
U2OpStatus2Log os;
fullPath = GUrlUtils::prepareDirLocation(fullPath, os);
if (fullPath.isEmpty()) {
QMessageBox::critical(this, L10N::errorTitle(), os.getError());
ui->saveFilenameLineEdit->setFocus();
return;
}
QString dbId = getDBId();
QStringList resIds = resourceId.split(QRegExp("[\\s,;]+"));
QList<Task*> tasks;
QString fileFormat;
if (ui->formatBox->count() > 0) {
fileFormat = ui->formatBox->currentText();
}
QVariantMap hints;
hints.insert(FORCE_DOWNLOAD_SEQUENCE_HINT, ui->chbForceDownloadSequence->isVisible() && ui->chbForceDownloadSequence->isChecked());
int taskCount = 0;
bool addToProject = ui->chbAddToProjectCheck->isChecked();
if (addToProject && resIds.size() >= 100) {
QString message = tr("There are more than 100 files found for download.\nAre you sure you want to open all of them?");
int button = QMessageBox::question(QApplication::activeWindow(), tr("Warning"), message,
tr("Cancel"), tr("Open anyway"), tr("Don't open"));
if (button == 0) {
return; // return to dialog
} else if (button == 2) {
addToProject = false;
}
}
bool hasLoadOnlyDocuments = false;
foreach (const QString &resId, resIds) {
LoadRemoteDocumentMode mode = LoadRemoteDocumentMode_LoadOnly;
if (addToProject) {
mode = taskCount < OpenViewTask::MAX_DOC_NUMBER_TO_OPEN_VIEWS ? LoadRemoteDocumentMode_OpenView : LoadRemoteDocumentMode_AddToProject;
}
hasLoadOnlyDocuments = hasLoadOnlyDocuments || mode == LoadRemoteDocumentMode_LoadOnly;
tasks.append(new LoadRemoteDocumentAndAddToProjectTask(resId, dbId, fullPath, fileFormat, hints, mode));
taskCount++;
}
void ExportProjectDialogController::accept(){
QString dirPath = exportFolderEdit->text();
projectFile = fixProjectFile(projectFileEdit->text());
U2OpStatus2Log os;
exportDir = GUrlUtils::prepareDirLocation(dirPath, os);
if (exportDir.isEmpty()) {
assert(os.hasError());
QMessageBox::critical(this, this->windowTitle(), os.getError());
return;
}
QDialog::accept();
}
Task *ConservationPlotWorker::tick() {
U2OpStatus2Log os;
while (inChannel->hasMessage()) {
Message m = getMessageAndSetupScriptValues(inChannel);
QVariantMap data = m.getData().toMap();
if (!data.contains(ANNOT_SLOT_ID)) {
os.setError("Annotations slot is empty");
return new FailTask(os.getError());
}
plotData = StorageUtils::getAnnotationTableHandlers(data[ANNOT_SLOT_ID]);
}
if (!inChannel->isEnded()) {
return NULL;
}
ConservationPlotSettings settings = createConservationPlotSettings(os);
if (os.hasError()) {
return new FailTask(os.getError());
}
ConservationPlotTask* t = new ConservationPlotTask(settings, context->getDataStorage(), plotData);
t->addListeners(createLogListeners());
connect(t, SIGNAL(si_stateChanged()), SLOT(sl_taskFinished()));
return t;
if (inChannel->isEnded()) {
setDone();
}
return NULL;
}
Task* CAP3Worker::tick() {
U2OpStatus2Log os;
if (input->hasMessage()) {
Message inputMessage = getMessageAndSetupScriptValues(input);
SAFE_POINT(!inputMessage.isEmpty(), "NULL message!", NULL);
QVariantMap data = inputMessage.getData().toMap();
if (!data.contains(IN_URL_SLOT_ID)) {
os.setError("CAP3 input slot is empty!");
return new FailTask(os.getError());
}
QString dataset = data[BaseSlots::DATASET_SLOT().getId()].toString();
bool runCapForPreviousDataset = false;
if (dataset != currentDatasetName) {
if (!currentDatasetName.isEmpty()) {
runCapForPreviousDataset = true;
}
settings.inputFiles = inputSeqUrls;
inputSeqUrls.clear();
currentDatasetName = dataset;
}
inputSeqUrls << data.value(IN_URL_SLOT_ID).value<QString>();
if (runCapForPreviousDataset) {
return runCap3();
}
settings.inputFiles = inputSeqUrls;
}
else if (input->isEnded()) {
if (!settings.inputFiles.isEmpty()) {
return runCap3();
}
else {
datasetNumber = 0;
setDone();
}
}
return NULL;
}
void CreateDocumentFromTextDialogController::accept() {
QString validationError = w->validate();
if(!validationError.isEmpty()){
QMessageBox::critical(this, this->windowTitle(), validationError);
return;
}
const QString url = saveController->getSaveFileName();
QFileInfo fi(url);
if(fi.baseName().isEmpty()){
QMessageBox::critical(this, this->windowTitle(), tr("Filename is empty"));
return;
}
if(url.isEmpty()){
QMessageBox::critical(this, this->windowTitle(), tr("No path specified"));
return;
}
U2OpStatus2Log os;
QString fullPath = GUrlUtils::prepareFileLocation(url, os);
if (fullPath.isEmpty()) {
QMessageBox::critical(this, L10N::errorTitle(), os.getError());
return;
}
if(ui->nameEdit->text().isEmpty()) {
QMessageBox::critical(this, this->windowTitle(), tr("Sequence name is empty"));
return;
}
CHECK_OP(os, );
Task *task = new CreateSequenceFromTextAndOpenViewTask(prepareSequences(), saveController->getFormatIdToSave(), GUrl(fullPath), ui->saveImmediatelyBox->isChecked());
AppContext::getTaskScheduler()->registerTopLevelTask(task);
QDialog::accept();
}
void ADVClipboard::copySequenceSelection(bool complement, bool amino) {
ADVSequenceObjectContext* seqCtx = getSequenceContext();
if (seqCtx == NULL) {
QMessageBox::critical(QApplication::activeWindow(), L10N::errorTitle(), "No sequence selected!");
return;
}
QString res;
QVector<U2Region> regions = seqCtx->getSequenceSelection()->getSelectedRegions();
#ifdef UGENE_X86
int totalLen = 0;
foreach (const U2Region& r, regions) {
totalLen += r.length;
}
if (totalLen > MAX_COPY_SIZE_FOR_X86) {
QMessageBox::critical(QApplication::activeWindow(), L10N::errorTitle(), COPY_FAILED_MESSAGE);
return;
}
#endif
if (!regions.isEmpty()) {
U2SequenceObject* seqObj = seqCtx->getSequenceObject();
DNATranslation* complTT = complement ? seqCtx->getComplementTT() : NULL;
DNATranslation* aminoTT = amino ? seqCtx->getAminoTT() : NULL;
U2OpStatus2Log os;
QList<QByteArray> seqParts = U2SequenceUtils::extractRegions(seqObj->getSequenceRef(), regions, complTT, aminoTT, false, os);
if (os.hasError()) {
QMessageBox::critical(QApplication::activeWindow(), L10N::errorTitle(), tr("An error occurred during getting sequence data: %1").arg(os.getError()));
return;
}
if (seqParts.size() == 1) {
putIntoClipboard(seqParts.first());
return;
}
res = U1SequenceUtils::joinRegions(seqParts);
}
putIntoClipboard(res);
}
bool CreatePhyTreeDialogController::checkFileName() {
const QString fileName = saveController->getSaveFileName();
if (fileName.isEmpty()) {
QMessageBox::warning(this, tr("Warning"), tr("Please, input the file name."));
ui->fileNameEdit->setFocus();
return false;
}
settings.fileUrl = fileName;
U2OpStatus2Log os;
GUrlUtils::validateLocalFileUrl(GUrl(fileName), os);
if (os.hasError()) {
QMessageBox::warning(this, tr("Error"), tr("Please, change the output file.") + "\n" + os.getError());
ui->fileNameEdit->setFocus(Qt::MouseFocusReason);
return false;
}
return true;
}
