void ExportProjectDialogController::accept(){
QString dirPath = exportFolderEdit->text();
projectFile = fixProjectFile(projectFileEdit->text());
U2OpStatus2Log os;
exportDir = GUrlUtils::prepareDirLocation(dirPath, os);
if (exportDir.isEmpty()) {
assert(os.hasError());
QMessageBox::critical(this, this->windowTitle(), os.getError());
return;
}
QDialog::accept();
}
bool CreatePhyTreeDialogController::checkFileName() {
const QString fileName = saveController->getSaveFileName();
if (fileName.isEmpty()) {
QMessageBox::warning(this, tr("Warning"), tr("Please, input the file name."));
ui->fileNameEdit->setFocus();
return false;
}
settings.fileUrl = fileName;
U2OpStatus2Log os;
GUrlUtils::validateLocalFileUrl(GUrl(fileName), os);
if (os.hasError()) {
QMessageBox::warning(this, tr("Error"), tr("Please, change the output file.") + "\n" + os.getError());
ui->fileNameEdit->setFocus(Qt::MouseFocusReason);
return false;
}
return true;
}
void ADVClipboard::copySequenceSelection(bool complement, bool amino) {
ADVSequenceObjectContext* seqCtx = getSequenceContext();
if (seqCtx == NULL) {
QMessageBox::critical(QApplication::activeWindow(), L10N::errorTitle(), "No sequence selected!");
return;
}
QString res;
QVector<U2Region> regions = seqCtx->getSequenceSelection()->getSelectedRegions();
#ifdef UGENE_X86
int totalLen = 0;
foreach (const U2Region& r, regions) {
totalLen += r.length;
}
if (totalLen > MAX_COPY_SIZE_FOR_X86) {
QMessageBox::critical(QApplication::activeWindow(), L10N::errorTitle(), COPY_FAILED_MESSAGE);
return;
}
#endif
if (!regions.isEmpty()) {
U2SequenceObject* seqObj = seqCtx->getSequenceObject();
DNATranslation* complTT = complement ? seqCtx->getComplementTT() : NULL;
DNATranslation* aminoTT = amino ? seqCtx->getAminoTT() : NULL;
U2OpStatus2Log os;
QList<QByteArray> seqParts = U2SequenceUtils::extractRegions(seqObj->getSequenceRef(), regions, complTT, aminoTT, false, os);
if (os.hasError()) {
QMessageBox::critical(QApplication::activeWindow(), L10N::errorTitle(), tr("An error occurred during getting sequence data: %1").arg(os.getError()));
return;
}
if (seqParts.size() == 1) {
putIntoClipboard(seqParts.first());
return;
}
res = U1SequenceUtils::joinRegions(seqParts);
}
putIntoClipboard(res);
}
Task *ConservationPlotWorker::tick() {
U2OpStatus2Log os;
while (inChannel->hasMessage()) {
Message m = getMessageAndSetupScriptValues(inChannel);
QVariantMap data = m.getData().toMap();
if (!data.contains(ANNOT_SLOT_ID)) {
os.setError("Annotations slot is empty");
return new FailTask(os.getError());
}
plotData = StorageUtils::getAnnotationTableHandlers(data[ANNOT_SLOT_ID]);
}
if (!inChannel->isEnded()) {
return NULL;
}
ConservationPlotSettings settings = createConservationPlotSettings(os);
if (os.hasError()) {
return new FailTask(os.getError());
}
ConservationPlotTask* t = new ConservationPlotTask(settings, context->getDataStorage(), plotData);
t->addListeners(createLogListeners());
connect(t, SIGNAL(si_stateChanged()), SLOT(sl_taskFinished()));
return t;
if (inChannel->isEnded()) {
setDone();
}
return NULL;
}
bool StreamShortReadWriter::writeNextSequence(const U2SequenceObject *seq) {
U2OpStatus2Log os;
fastaFormat->storeSequence(seq, io, os);
return !os.hasError();
}
