C++ (Cpp) U2SequenceObject::getQuality示例

Task::ReportResult GTest_DNASequenceQualityScores::report() {

    GObject *obj = getContext<GObject>(this, objContextName);
    if(obj==NULL){
        stateInfo.setError(QString("wrong value: %1").arg(OBJ_ATTR));
        return ReportResult_Finished;
    }

    U2SequenceObject * mySequence = qobject_cast<U2SequenceObject*>(obj);
    if(mySequence==NULL){
        stateInfo.setError(QString("Can't cast to sequence from: %1").arg(obj->getGObjectName()));
        return ReportResult_Finished;
    }

    const DNAQuality& quality = mySequence->getQuality();
    if (quality.isEmpty()) {
        stateInfo.setError("Sequence doesn't have quality scores");
        return ReportResult_Finished;
    }

    if (quality.qualCodes != qualityScores) {
        stateInfo.setError( QString("Quality scores are not valid! The score is %1, expected %2").arg(quality.qualCodes.constData()).arg(qualityScores.constData()));
        return ReportResult_Finished;
    }

    return ReportResult_Finished;
}

示例#2

显示文件

文件： DNASequenceObjectTests.cpp 项目： m-angelov/ugene

Task::ReportResult GTest_DNASequenceQualityValue::report() {

    GObject *obj = getContext<GObject>(this, objContextName);
    if(obj==NULL){
        stateInfo.setError(QString("wrong value: %1").arg(OBJ_ATTR));
        return ReportResult_Finished;
    }

    U2SequenceObject * mySequence = qobject_cast<U2SequenceObject*>(obj);
    if(mySequence==NULL){
        stateInfo.setError(QString("Can't cast to sequence from: %1").arg(obj->getGObjectName()));
        return ReportResult_Finished;
    }

    const DNAQuality& quality = mySequence->getQuality();
    if ( (pos < 0) || (pos > quality.qualCodes.count() - 1 )  ) {
        stateInfo.setError(QString("Quality scores doesn't have position %1").arg(pos));
        return ReportResult_Finished;
    }

    int val = quality.getValue(pos);

    if (val != expectedVal) {
        stateInfo.setError( QString("Quality score values do not match! The score is %1, expected %2").arg(val).arg(expectedVal));
        return ReportResult_Finished;
    }

    return ReportResult_Finished;
}