示例#1
0
MAlignment Kalign_Load_Align_Compare_Task::dna_to_ma(QList<GObject*> dnaSeqs) {

    int seqCount = dnaSeqs.count();
    U2SequenceObject *seq = qobject_cast<U2SequenceObject *>(dnaSeqs[0]);
    MAlignment ma("Alignment",seq->getAlphabet());
    for(int i=0; i<seqCount; i++) {
        seq = qobject_cast<U2SequenceObject *>(dnaSeqs[i]);
        if(seq == NULL) {
            stateInfo.setError(  QString("Can't cast GObject to U2SequenceObject") );
            return ma;
        }
        QByteArray seqData = seq->getWholeSequenceData(stateInfo);
        SAFE_POINT_OP(stateInfo, MAlignment());
        ma.addRow(seq->getSequenceName(), seqData, stateInfo);
        SAFE_POINT_OP(stateInfo, MAlignment());
    }
    return ma;
}