void init_ex10(py::module &m) {
// Vectorize all arguments of a function (though non-vector arguments are also allowed)
m.def("vectorized_func", py::vectorize(my_func));
// Vectorize a lambda function with a capture object (e.g. to exclude some arguments from the vectorization)
m.def("vectorized_func2",
[](py::array_dtype<int> x, py::array_dtype<float> y, float z) {
return py::vectorize([z](int x, float y) { return my_func(x, y, z); })(x, y);
}
);
// Vectorize a complex-valued function
m.def("vectorized_func3", py::vectorize(my_func3));
}
void init_ex12(py::module &m) {
/* Important: use the wrapper type as a template
argument to class_<>, but use the original name
to denote the type */
py::class_<PyExample12>(m, "Example12")
/* Declare that 'PyExample12' is really an alias for the original type 'Example12' */
.alias<Example12>()
.def(py::init<int>())
/* Reference original class in function definitions */
.def("run", &Example12::run)
.def("pure_virtual", &Example12::pure_virtual);
m.def("runExample12", &runExample12);
m.def("runExample12Virtual", &runExample12Virtual);
}
void define_target(py::module &m) {
// Disambiguate some ambigious methods
int (Target::*natural_vector_size_method)(const Type &t) const = &Target::natural_vector_size;
bool (Target::*supports_type1_method)(const Type &t) const = &Target::supports_type;
bool (Target::*supports_type2_method)(const Type &t, DeviceAPI device) const = &Target::supports_type;
auto target_class =
py::class_<Target>(m, "Target")
.def(py::init<>())
.def(py::init<const std::string &>())
.def(py::init<Target::OS, Target::Arch, int>())
.def(py::init<Target::OS, Target::Arch, int, std::vector<Target::Feature>>())
.def("__eq__", [](const Target &value, Target *value2) { return value2 && value == *value2; })
.def("__ne__", [](const Target &value, Target *value2) { return !value2 || value != *value2; })
.def_readwrite("os", &Target::os)
.def_readwrite("arch", &Target::arch)
.def_readwrite("bits", &Target::bits)
.def("__repr__", &target_repr)
.def("__str__", &Target::to_string)
.def("to_string", &Target::to_string)
.def("has_feature", &Target::has_feature)
.def("features_any_of", &Target::features_any_of, py::arg("features"))
.def("features_all_of", &Target::features_all_of, py::arg("features"))
.def("set_feature", &Target::set_feature, py::arg("f"), py::arg("value") = true)
.def("set_features", &Target::set_features, py::arg("features"), py::arg("value") = true)
.def("with_feature", &Target::with_feature, py::arg("feature"))
.def("without_feature", &Target::without_feature, py::arg("feature"))
.def("has_gpu_feature", &Target::has_gpu_feature)
.def("supports_type", supports_type1_method, py::arg("type"))
.def("supports_type", supports_type2_method, py::arg("type"), py::arg("device"))
.def("supports_device_api", &Target::supports_device_api, py::arg("device"))
.def("natural_vector_size", natural_vector_size_method, py::arg("type"))
.def("has_large_buffers", &Target::has_large_buffers)
.def("maximum_buffer_size", &Target::maximum_buffer_size)
.def("supported", &Target::supported)
.def_static("validate_target_string", &Target::validate_target_string, py::arg("name"));
;
m.def("get_host_target", &get_host_target);
m.def("get_target_from_environment", &get_target_from_environment);
m.def("get_jit_target_from_environment", &get_jit_target_from_environment);
m.def("target_feature_for_device_api", &target_feature_for_device_api);
}
void wrap_messaging(py::module &m) {
py::module mMessaging = m.def_submodule("messaging");
mMessaging.def("init_transport", &xmessaging::init_transport);
mMessaging.def("stop_transport", &xmessaging::stop_transport);
mMessaging.def("alloc_read_buffer", []() {
xmessaging::alloc_read_buffer(BUFFER_LEN);
});
mMessaging.def("dealloc_read_buffer", []() {
xmessaging::dealloc_read_buffer();
});
// this will change to a buffer object
mMessaging.def("send_bytes", [](py::buffer pb) {
py::buffer_info req = pb.request();
xmessaging::queue((const char*)req.ptr, req.size);
});
mMessaging.def("update", []() -> bool {
bool message_read = false;
char *buffer;
size_t buffer_len;
xmessaging::update(message_read, buffer, buffer_len);
if (message_read)
{
simulation::process_step(buffer, buffer_len);
}
return message_read;
});
}
void define_module(py::module &m) {
auto module_class = py::class_<Module>(m, "Module")
.def(py::init<const std::string &, const Target &>(), py::arg("name"), py::arg("target"))
.def("target", &Module::target)
.def("name", &Module::name)
.def("auto_schedule", &Module::auto_schedule)
.def("buffers", &Module::buffers)
.def("submodules", &Module::submodules)
.def("append", (void (Module::*)(const Buffer<> &)) &Module::append, py::arg("buffer"))
.def("append", (void (Module::*)(const Module &)) &Module::append, py::arg("module"))
.def("compile", &Module::compile, py::arg("outputs"))
.def("compile_to_buffer", &Module::compile_to_buffer)
.def("resolve_submodules", &Module::resolve_submodules)
.def("remap_metadata_name", &Module::remap_metadata_name)
.def("get_metadata_name_map", &Module::get_metadata_name_map)
.def("set_auto_schedule", &Module::set_auto_schedule)
// TODO: ExternalCode-related methods deliberately skipped for now.
// .def("append", (void (Module::*)(const ExternalCode &)) &Module::append, py::arg("external_code"))
// .def("external_code", &Module::external_code)
// TODO: Internal::LoweredFunc-related methods deliberately skipped for now.
// .def("functions", &Module::functions)
// .def("get_function_by_name", &Module::get_function_by_name, py::arg("name"))
// .def("append", (void (Module::*)(const Internal::LoweredFunc &)) &Module::append, py::arg("function"))
.def("__repr__", [](const Module &m) -> std::string {
std::ostringstream o;
o << "<halide.Module '" << m.name() << "'>";
return o.str();
})
;
m.def("link_modules", &link_modules, py::arg("name"), py::arg("modules"));
m.def("compile_standalone_runtime", (void (*)(const std::string &, Target)) &compile_standalone_runtime, py::arg("filename"), py::arg("target"));
m.def("compile_standalone_runtime", (Outputs (*)(const Outputs &, Target)) &compile_standalone_runtime, py::arg("outputs"), py::arg("target"));
// TODO: compile_multitarget() deliberately skipped for now.
}
void init_ex9(py::module &m) {
py::module m_sub = m.def_submodule("submodule");
m_sub.def("submodule_func", &submodule_func);
py::class_<A>(m_sub, "A")
.def(py::init<int>())
.def("__repr__", &A::toString);
py::class_<B>(m_sub, "B")
.def(py::init<>())
.def("get_a1", &B::get_a1, "Return the internal A 1", py::return_value_policy::reference_internal)
.def("get_a2", &B::get_a2, "Return the internal A 2", py::return_value_policy::reference_internal)
.def_readwrite("a1", &B::a1) // def_readonly uses an internal reference return policy by default
.def_readwrite("a2", &B::a2);
m.attr("OD") = py::module::import("collections").attr("OrderedDict");
}
void python_export_igl_tetgen(py::module &me) {
py::module m = me.def_submodule(
"tetgen", "Wrappers for libigl functions that use tetgen");
#include "../../py_igl/copyleft/tetgen/py_tetrahedralize.cpp"
}
void python_export_igl_png(py::module &me) {
py::module m = me.def_submodule(
"png", "Wrappers for libigl functions that use png");
#include "../py_igl/png/py_readPNG.cpp"
#include "../py_igl/png/py_writePNG.cpp"
}
void python_export_igl_embree(py::module &me) {
py::module m = me.def_submodule(
"embree", "Wrappers for libigl functions that use embree");
#include "../py_igl/embree/py_ambient_occlusion.cpp"
#include "../py_igl/embree/py_reorient_facets_raycast.cpp"
#include "../py_igl/embree/py_line_mesh_intersection.cpp"
}
void define_lambda(py::module &m) {
// TODO: 'lambda' is a reserved word in Python, so we
// can't use it for a function. Using 'lambda_func' for now.
m.def("lambda_func", [](py::args args) -> Func {
auto vars = args_to_vector<Var>(args, 0, 1);
Expr e = args[args.size() - 1].cast<Expr>();
Func f("lambda" + Internal::unique_name('_'));
f(vars) = e;
return f;
});
}
void init_ex4(py::module &m) {
m.def("test_function", &test_function1);
m.def("test_function", &test_function2);
m.def("test_function", &test_function3);
m.attr("some_constant") = py::int_(14);
py::enum_<EMyEnumeration>(m, "EMyEnumeration")
.value("EFirstEntry", EFirstEntry)
.value("ESecondEntry", ESecondEntry)
.export_values();
py::class_<Example4> ex4_class(m, "Example4");
ex4_class.def_static("test_function", &Example4::test_function);
py::enum_<Example4::EMode>(ex4_class, "EMode")
.value("EFirstMode", Example4::EFirstMode)
.value("ESecondMode", Example4::ESecondMode)
.export_values();
m.def("return_bytes", &return_bytes);
m.def("print_bytes", &print_bytes);
}
bool Context::import(py::module m)
{
if (!m)
return false;
string name = PyModule_GetName(m.ptr());
if (!name.empty())
{
py_global[name.c_str()] = m;
}
return true;
}
void pyqpp_cell_export (py::module m) {
py_cell_export<float>(m, "periodic_cell_f");
qpp::gen_cell<float, qpp::matrix3<float> >::py_export(
m, "point_group_f");
qpp::gen_cell<float, qpp::rotrans<float,false> >::py_export(
m, "crystal_group_f");
qpp::gen_cell<float, qpp::rotrans<float,true> >::py_export(
m, "finite_crystal_group_f");
qpp::array_group<qpp::matrix3<float> >::py_export(
m, "array_point_group_f");
qpp::array_group<qpp::rotrans<float,true> >::py_export(
m, "array_fincryst_group_f");
m.def("generator_form", py_generator_form<float, qpp::matrix3<float>,
qpp::array_group<qpp::matrix3<float> > > );
m.def("generator_form", py_generator_form<float, qpp::rotrans<float,true>,
qpp::array_group<qpp::rotrans<float,true> > >);
#ifdef PYTHON_EXP_EXT
py_cell_export<double>(m, "periodic_cell_d");
qpp::gen_cell<double, qpp::matrix3<double> >::py_export(
m, "point_group_d");
qpp::gen_cell<double, qpp::rotrans<double,false> >::py_export(
m, "crystal_group_d");
qpp::gen_cell<double, qpp::rotrans<double,true> >::py_export(
m, "finite_crystal_group_d");
qpp::array_group<qpp::matrix3<double> >::py_export(
m, "array_point_group_d");
qpp::array_group<qpp::rotrans<double,true> >::py_export(
m, "array_fincryst_group_d");
m.def("generator_form", py_generator_form<double, qpp::matrix3<double>,
qpp::array_group<qpp::matrix3<double> > >);
m.def("generator_form", py_generator_form<double, qpp::rotrans<double,true>,
qpp::array_group<qpp::rotrans<double,true> > >);
#endif
}
// World map is generally a point of danger
// A global static contains all of the tiles
// Python accesses those by reference, and is not necessarily aware of mutations to the global static map of tiles
void wrap_world_map(py::module &m)
{
py::module mMap = m.def_submodule("map");
mMap.def("get_map", &world_map::get_map, py::return_value_policy::reference);
mMap.def("get_tile", &world_map::get_tile, py::return_value_policy::reference);
mMap.def("tile_owner", &world_map::tile_owner);
mMap.def("get_map_size", &world_map::get_map_size);
mMap.def("save_file_fb", &world_map::save_file_fb);
mMap.def("for_each_tile", [](py::function func) {
auto fp = [&func](const sf::Vector3i& coord, const Tile& tile) { func(coord, tile); };
world_map::for_each_tile(fp);
});
}
void init_ex11(py::module &m) {
m.def("kw_func", &kw_func, py::arg("x"), py::arg("y"));
m.def("kw_func2", &kw_func, py::arg("x") = 100, py::arg("y") = 200);
m.def("kw_func3", [](const char *) { }, py::arg("data") = std::string("Hello world!"));
/* A fancier default argument */
std::vector<int> list;
list.push_back(13);
list.push_back(17);
m.def("kw_func4", &kw_func4, py::arg("myList") = list);
m.def("call_kw_func", &call_kw_func);
m.def("args_function", &args_function);
m.def("args_kwargs_function", &args_kwargs_function);
using namespace py::literals;
m.def("kw_func_udl", &kw_func, "x"_a, "y"_a=300);
m.def("kw_func_udl_z", &kw_func, "x"_a, "y"_a=0);
}
// ----------------------------------------------------------------------------------------
void bind_vector(py::module& m)
{
{
py::class_<cv, std::shared_ptr<cv>>(m, "vector", "This object represents the mathematical idea of a column vector.")
.def(py::init())
.def("set_size", &cv_set_size)
.def("resize", &cv_set_size)
.def(py::init(&cv_from_object))
.def("__repr__", &cv__repr__)
.def("__str__", &cv__str__)
.def("__len__", &cv__len__)
.def("__getitem__", &cv__getitem__)
.def("__getitem__", &cv__getitem2__)
.def("__setitem__", &cv__setitem__)
.def_property_readonly("shape", &cv_get_matrix_size)
.def(py::pickle(&getstate<cv>, &setstate<cv>));
m.def("dot", &dotprod, "Compute the dot product between two dense column vectors.");
}
{
typedef point type;
py::class_<type>(m, "point", "This object represents a single point of integer coordinates that maps directly to a dlib::point.")
.def(py::init<long,long>(), py::arg("x"), py::arg("y"))
.def("__repr__", &point__repr__)
.def("__str__", &point__str__)
.def_property_readonly("x", &point_x, "The x-coordinate of the point.")
.def_property_readonly("y", &point_y, "The y-coordinate of the point.")
.def(py::pickle(&getstate<type>, &setstate<type>));
}
{
typedef std::vector<point> type;
py::bind_vector<type>(m, "points", "An array of point objects.")
.def("clear", &type::clear)
.def("resize", resize<type>)
.def("extend", extend_vector_with_python_list<point>)
.def(py::pickle(&getstate<type>, &setstate<type>));
}
}
void init_issues(py::module &m) {
py::module m2 = m.def_submodule("issues");
#if !defined(_MSC_VER)
// Visual Studio 2015 currently cannot compile this test
// (see the comment in type_caster_base::make_copy_constructor)
// #70 compilation issue if operator new is not public
class NonConstructible { private: void *operator new(size_t bytes) throw(); };
py::class_<NonConstructible>(m, "Foo");
m2.def("getstmt", []() -> NonConstructible * { return nullptr; },
py::return_value_policy::reference);
#endif
// #137: const char* isn't handled properly
m2.def("print_cchar", [](const char *string) { std::cout << string << std::endl; });
// #150: char bindings broken
m2.def("print_char", [](char c) { std::cout << c << std::endl; });
// #159: virtual function dispatch has problems with similar-named functions
struct Base { virtual void dispatch(void) const {
/* for some reason MSVC2015 can't compile this if the function is pure virtual */
}; };
struct DispatchIssue : Base {
virtual void dispatch(void) const {
PYBIND11_OVERLOAD_PURE(void, Base, dispatch, /* no arguments */);
}
};
py::class_<Base, std::unique_ptr<Base>, DispatchIssue>(m2, "DispatchIssue")
.def(py::init<>())
.def("dispatch", &Base::dispatch);
m2.def("dispatch_issue_go", [](const Base * b) { b->dispatch(); });
struct Placeholder { int i; Placeholder(int i) : i(i) { } };
py::class_<Placeholder>(m2, "Placeholder")
.def(py::init<int>())
.def("__repr__", [](const Placeholder &p) { return "Placeholder[" + std::to_string(p.i) + "]"; });
// #171: Can't return reference wrappers (or STL datastructures containing them)
m2.def("return_vec_of_reference_wrapper", [](std::reference_wrapper<Placeholder> p4){
Placeholder *p1 = new Placeholder{1};
Placeholder *p2 = new Placeholder{2};
Placeholder *p3 = new Placeholder{3};
std::vector<std::reference_wrapper<Placeholder>> v;
v.push_back(std::ref(*p1));
v.push_back(std::ref(*p2));
v.push_back(std::ref(*p3));
v.push_back(p4);
return v;
});
// #181: iterator passthrough did not compile
m2.def("iterator_passthrough", [](py::iterator s) -> py::iterator {
return py::make_iterator(std::begin(s), std::end(s));
});
// #187: issue involving std::shared_ptr<> return value policy & garbage collection
struct ElementBase { virtual void foo() { } /* Force creation of virtual table */ };
struct ElementA : ElementBase {
ElementA(int v) : v(v) { }
int value() { return v; }
int v;
};
struct ElementList {
void add(std::shared_ptr<ElementBase> e) { l.push_back(e); }
std::vector<std::shared_ptr<ElementBase>> l;
};
py::class_<ElementBase, std::shared_ptr<ElementBase>> (m2, "ElementBase");
py::class_<ElementA, std::shared_ptr<ElementA>>(m2, "ElementA", py::base<ElementBase>())
.def(py::init<int>())
.def("value", &ElementA::value);
py::class_<ElementList, std::shared_ptr<ElementList>>(m2, "ElementList")
.def(py::init<>())
.def("add", &ElementList::add)
.def("get", [](ElementList &el){
py::list list;
for (auto &e : el.l)
list.append(py::cast(e));
return list;
});
// (no id): should not be able to pass 'None' to a reference argument
m2.def("print_element", [](ElementA &el) { std::cout << el.value() << std::endl; });
// (no id): don't cast doubles to ints
m2.def("expect_float", [](float f) { return f; });
m2.def("expect_int", [](int i) { return i; });
// (no id): don't invoke Python dispatch code when instantiating C++
// classes that were not extended on the Python side
struct A {
virtual ~A() {}
virtual void f() { std::cout << "A.f()" << std::endl; }
};
struct PyA : A {
PyA() { std::cout << "PyA.PyA()" << std::endl; }
void f() override {
std::cout << "PyA.f()" << std::endl;
PYBIND11_OVERLOAD(void, A, f);
}
};
auto call_f = [](A *a) { a->f(); };
pybind11::class_<A, std::unique_ptr<A>, PyA>(m2, "A")
.def(py::init<>())
.def("f", &A::f);
m2.def("call_f", call_f);
try {
py::class_<Placeholder>(m2, "Placeholder");
throw std::logic_error("Expected an exception!");
} catch (std::runtime_error &) {
/* All good */
}
// Issue #283: __str__ called on uninitialized instance when constructor arguments invalid
class StrIssue {
public:
StrIssue(int i) : val{i} {}
StrIssue() : StrIssue(-1) {}
int value() const { return val; }
private:
int val;
};
py::class_<StrIssue> si(m2, "StrIssue");
si .def(py::init<int>())
.def(py::init<>())
.def("__str__", [](const StrIssue &si) {
std::cout << "StrIssue.__str__ called" << std::endl;
return "StrIssue[" + std::to_string(si.value()) + "]";
})
;
}
void init_ex18(py::module & m) {
m.def("example18", &example18);
}
void define_operators(py::module &m) {
m.def("max", [](py::args args) -> Expr {
if (args.size() < 2) {
throw py::value_error("max() must have at least 2 arguments");
}
int pos = (int) args.size() - 1;
Expr value = args[pos--].cast<Expr>();
while (pos >= 0) {
value = max(args[pos--].cast<Expr>(), value);
}
return value;
});
m.def("min", [](py::args args) -> Expr {
if (args.size() < 2) {
throw py::value_error("min() must have at least 2 arguments");
}
int pos = (int) args.size() - 1;
Expr value = args[pos--].cast<Expr>();
while (pos >= 0) {
value = min(args[pos--].cast<Expr>(), value);
}
return value;
});
m.def("clamp", &clamp);
m.def("abs", &abs);
m.def("absd", &absd);
m.def("select", [](py::args args) -> Expr {
if (args.size() < 3) {
throw py::value_error("select() must have at least 3 arguments");
}
if ((args.size() % 2) == 0) {
throw py::value_error("select() must have an odd number of arguments");
}
int pos = (int) args.size() - 1;
Expr false_value = args[pos--].cast<Expr>();
while (pos > 0) {
Expr true_value = args[pos--].cast<Expr>();
Expr condition = args[pos--].cast<Expr>();
false_value = select(condition, true_value, false_value);
}
return false_value;
});
m.def("tuple_select", [](py::args args) -> py::tuple {
_halide_user_assert(args.size() >= 3)
<< "tuple_select() must have at least 3 arguments";
_halide_user_assert((args.size() % 2) != 0)
<< "tuple_select() must have an odd number of arguments";
int pos = (int) args.size() - 1;
Tuple false_value = args[pos--].cast<Tuple>();
bool has_tuple_cond = false, has_expr_cond = false;
while (pos > 0) {
Tuple true_value = args[pos--].cast<Tuple>();;
// Note that 'condition' can be either Expr or Tuple, but must be consistent across all
py::object py_cond = args[pos--];
Expr expr_cond;
Tuple tuple_cond(expr_cond);
try {
tuple_cond = py_cond.cast<Tuple>();
has_tuple_cond = true;
} catch (...) {
expr_cond = py_cond.cast<Expr>();
has_expr_cond = true;
}
if (expr_cond.defined()) {
false_value = tuple_select(expr_cond, true_value, false_value);
} else {
false_value = tuple_select(tuple_cond, true_value, false_value);
}
}
_halide_user_assert(!(has_tuple_cond && has_expr_cond))
<<"tuple_select() may not mix Expr and Tuple for the condition elements.";
return to_python_tuple(false_value);
});
m.def("sin", &sin);
m.def("asin", &asin);
m.def("cos", &cos);
m.def("acos", &acos);
m.def("tan", &tan);
m.def("atan", &atan);
m.def("atan", &atan2);
m.def("atan2", &atan2);
m.def("sinh", &sinh);
m.def("asinh", &asinh);
m.def("cosh", &cosh);
m.def("acosh", &acosh);
m.def("tanh", &tanh);
m.def("atanh", &atanh);
m.def("sqrt", &sqrt);
m.def("hypot", &hypot);
m.def("exp", &exp);
m.def("log", &log);
m.def("pow", &pow);
m.def("erf", &erf);
m.def("fast_log", &fast_log);
m.def("fast_exp", &fast_exp);
m.def("fast_pow", &fast_pow);
m.def("fast_inverse", &fast_inverse);
m.def("fast_inverse_sqrt", &fast_inverse_sqrt);
m.def("floor", &floor);
m.def("ceil", &ceil);
m.def("round", &round);
m.def("trunc", &trunc);
m.def("fract", &fract);
m.def("is_nan", &is_nan);
m.def("reinterpret", (Expr (*)(Type, Expr)) &reinterpret);
m.def("cast", (Expr (*)(Type, Expr)) &cast);
m.def("print", [](py::args args) -> Expr {
return print(args_to_vector_for_print(args));
});
m.def("print_when", [](Expr condition, py::args args) -> Expr {
return print_when(condition, args_to_vector_for_print(args));
}, py::arg("condition"));
m.def("require", [](Expr condition, Expr value, py::args args) -> Expr {
auto v = args_to_vector<Expr>(args);
v.insert(v.begin(), value);
return require(condition, v);
}, py::arg("condition"), py::arg("value"));
m.def("lerp", &lerp);
m.def("popcount", &popcount);
m.def("count_leading_zeros", &count_leading_zeros);
m.def("count_trailing_zeros", &count_trailing_zeros);
m.def("div_round_to_zero", &div_round_to_zero);
m.def("mod_round_to_zero", &mod_round_to_zero);
m.def("random_float", (Expr (*)()) &random_float);
m.def("random_uint", (Expr (*)()) &random_uint);
m.def("random_int", (Expr (*)()) &random_int);
m.def("random_float", (Expr (*)(Expr)) &random_float, py::arg("seed"));
m.def("random_uint", (Expr (*)(Expr)) &random_uint, py::arg("seed"));
m.def("random_int", (Expr (*)(Expr)) &random_int, py::arg("seed"));
m.def("undef", (Expr (*)(Type)) &undef);
m.def("memoize_tag", [](Expr result, py::args cache_key_values) -> Expr {
return Internal::memoize_tag_helper(result, args_to_vector<Expr>(cache_key_values));
}, py::arg("result"));
m.def("likely", &likely);
m.def("likely_if_innermost", &likely_if_innermost);
m.def("saturating_cast", (Expr (*)(Type, Expr))&saturating_cast);
}
void init_ResonancePdf(py::module &m) {
auto m_ls = m.def_submodule("Resonances");
py::class_<ResonancePdf, GooPdf>(m, "ResonancePdf").def_static("help", []() {
return HelpPrinter(ResonancePdf_docs);
});
py::class_<Resonances::RBW, ResonancePdf>(m_ls, "RBW")
.def(py::init<std::string, Variable, Variable, Variable, Variable, unsigned int, unsigned int, bool>(),
"Constructor for regular BW",
"name"_a,
"ar"_a,
"ai"_a,
"mass"_a,
"width"_a,
"sp"_a,
"cyc"_a,
"sym"_a = false);
py::class_<Resonances::GS, ResonancePdf>(m_ls, "GS")
.def(py::init<std::string, Variable, Variable, Variable, Variable, unsigned int, unsigned int>(),
"Constructor for regular Gounaris-Sakurai",
"name"_a,
"ar"_a,
"ai"_a,
"mass"_a,
"width"_a,
"sp"_a,
"cyc"_a);
py::class_<Resonances::LASS, ResonancePdf>(m_ls, "LASS")
.def(py::init<std::string, Variable, Variable, Variable, Variable, unsigned int, unsigned int>(),
"Constructor for LASS",
"name"_a,
"ar"_a,
"ai"_a,
"mass"_a,
"width"_a,
"sp"_a,
"cyc"_a);
py::class_<Resonances::NonRes, ResonancePdf>(m_ls, "NonRes")
.def(py::init<std::string, Variable, Variable>(), "Constructor for NonResonant", "name"_a, "ar"_a, "ai"_a);
py::class_<Resonances::Gauss, ResonancePdf>(m_ls, "Gauss")
.def(py::init<std::string, Variable, Variable, Variable, Variable, unsigned int>(),
"Constructor for regular GAUSS",
"name"_a,
"ar"_a,
"ai"_a,
"mean"_a,
"sigma"_a,
"cyc"_a);
py::class_<Resonances::FLATTE, ResonancePdf>(m_ls, "FLATTE")
.def(py::init<std::string, Variable, Variable, Variable, Variable, Variable, unsigned int, bool>(),
"Constructor for regular FLATTE",
"name"_a,
"ar"_a,
"ai"_a,
"mean"_a,
"g1"_a,
"rg2og1"_a,
"cyc"_a,
"symmDP"_a);
py::class_<Resonances::Spline, ResonancePdf>(m_ls, "Spline")
.def(py::init<std::string,
Variable,
Variable,
std::vector<fptype> &,
std::vector<Variable> &,
std::vector<Variable> &,
unsigned int,
bool>(),
"Constructor for regular cubic spline",
"name"_a,
"ar"_a,
"ai"_a,
"HH_bin_limits"_a,
"pwa_coefs_reals"_a,
"pwa_coefs_imags"_a,
"cyc"_a,
"symmDP"_a = false,
py::keep_alive<1, 5>(),
py::keep_alive<1, 6>(),
py::keep_alive<1, 7>());
}
void python_export_filesystem(py::module &m) {
using namespace fs;
py::module fs_module =
m.def_submodule("filesystem", "Cross-platform filesystem support");
py::class_<path> path_class(fs_module, "path");
path_class
.def(py::init<>())
.def(py::init<const path &>())
.def(py::init<const std::string &>())
.def("__len__", &path::length)
.def("file_size", &path::file_size)
.def("empty", &path::empty)
.def("is_absolute", &path::is_absolute)
.def("make_absolute", &path::make_absolute)
.def("exists", &path::exists)
.def("is_directory", &path::is_directory)
.def("is_file", &path::is_file)
.def("extension", &path::extension)
.def("parent_path", &path::parent_path)
.def("remove_file", &path::remove_file)
.def("resize_file", &path::resize_file)
.def("str", [](const path &p) { return p.str(); })
.def("str", [](const path &p, path::path_type t) { return p.str(t); })
.def("set", [](path &p, const std::string &v, path::path_type t) { p.set(v, t); })
.def("set", [](path &p, const std::string &v) { p.set(v); })
.def(py::self / py::self)
.def("__repr__", [](const path &p) { return p.str(); })
.def_static("getcwd", &path::getcwd);
py::enum_<path::path_type>(path_class, "path_type")
.value("windows_path", path::windows_path)
.value("posix_path", path::posix_path)
.value("native_path", path::native_path)
.export_values();
py::class_<resolver>(fs_module, "resolver")
.def(py::init<>())
.def("__len__", &resolver::size)
.def("append", &resolver::append)
.def("prepend", &resolver::prepend)
.def("resolve", &resolver::resolve)
.def("__getitem__", [](const resolver &r, size_t i) {
if (i >= r.size())
throw py::index_error();
return r[i];
})
.def("__setitem__", [](resolver &r, size_t i, path &v) {
if (i >= r.size())
throw py::index_error();
r[i] = v;
})
.def("__delitem__", [](resolver &r, size_t i) {
if (i >= r.size())
throw py::index_error();
r.erase(r.begin() + i);
})
.def("__repr__", [](const resolver &r) {
std::ostringstream oss;
oss << r;
return oss.str();
});
py::class_<MemoryMappedFile>(fs_module, "MemoryMappedFile")
.def(py::init<fs::path, size_t>())
.def(py::init<fs::path, bool>())
.def(py::init<fs::path>())
.def("resize", &MemoryMappedFile::resize)
.def("__repr__", &MemoryMappedFile::toString)
.def("size", &MemoryMappedFile::size)
.def("filename", &MemoryMappedFile::filename)
.def("readOnly", &MemoryMappedFile::readOnly)
.def_static("createTemporary", &MemoryMappedFile::createTemporary)
.def_buffer([](MemoryMappedFile &m) -> py::buffer_info {
return py::buffer_info(
m.data(),
sizeof(uint8_t),
py::format_descriptor<uint8_t>::format(),
1,
{ (size_t) m.size() },
{ sizeof(uint8_t) }
);
});
py::implicitly_convertible<std::string, path>();
}
void init_eigen(py::module &m) {
typedef Eigen::Matrix<float, 5, 6, Eigen::RowMajor> FixedMatrixR;
typedef Eigen::Matrix<float, 5, 6> FixedMatrixC;
typedef Eigen::Matrix<float, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor> DenseMatrixR;
typedef Eigen::Matrix<float, Eigen::Dynamic, Eigen::Dynamic> DenseMatrixC;
typedef Eigen::SparseMatrix<float, Eigen::RowMajor> SparseMatrixR;
typedef Eigen::SparseMatrix<float> SparseMatrixC;
// Non-symmetric matrix with zero elements
Eigen::MatrixXf mat(5, 6);
mat << 0, 3, 0, 0, 0, 11, 22, 0, 0, 0, 17, 11, 7, 5, 0, 1, 0, 11, 0,
0, 0, 0, 0, 11, 0, 0, 14, 0, 8, 11;
m.def("fixed_r", [mat]() -> FixedMatrixR {
return FixedMatrixR(mat);
});
m.def("fixed_c", [mat]() -> FixedMatrixC {
return FixedMatrixC(mat);
});
m.def("fixed_passthrough_r", [](const FixedMatrixR &m) -> FixedMatrixR {
return m;
});
m.def("fixed_passthrough_c", [](const FixedMatrixC &m) -> FixedMatrixC {
return m;
});
m.def("dense_r", [mat]() -> DenseMatrixR {
return DenseMatrixR(mat);
});
m.def("dense_c", [mat]() -> DenseMatrixC {
return DenseMatrixC(mat);
});
m.def("dense_passthrough_r", [](const DenseMatrixR &m) -> DenseMatrixR {
return m;
});
m.def("dense_passthrough_c", [](const DenseMatrixC &m) -> DenseMatrixC {
return m;
});
m.def("sparse_r", [mat]() -> SparseMatrixR {
return Eigen::SparseView<Eigen::MatrixXf>(mat);
});
m.def("sparse_c", [mat]() -> SparseMatrixC {
return Eigen::SparseView<Eigen::MatrixXf>(mat);
});
m.def("sparse_passthrough_r", [](const SparseMatrixR &m) -> SparseMatrixR {
return m;
});
m.def("sparse_passthrough_c", [](const SparseMatrixC &m) -> SparseMatrixC {
return m;
});
}
void python_export_spline(py::module &m) {
/* spline.h bindings */
py::module spline = m.def_submodule(
"spline", "Functions for evaluating and sampling Catmull-Rom splines");
spline.def("evalSpline", evalSpline<Float>, D(spline, evalSpline));
spline.def("evalSplineD", evalSplineD<Float>, D(spline, evalSplineD));
spline.def("evalSplineI", evalSplineI<Float>, D(spline, evalSplineI));
spline.def("eval1D", [](Float min, Float max, const VectorX &values,
Float x, bool extrapolate) {
return eval1D(min, max, values.data(), values.size(), x, extrapolate);
}, D(spline, eval1D));
spline.def("eval1D", [](Float min, Float max, const VectorX &values,
const MatrixX &x, bool extrapolate) -> MatrixX {
MatrixX result(x.rows(), x.cols());
for (int i=0; i<x.rows(); ++i)
for (int j=0; j<x.cols(); ++j)
result(i, j) = eval1D(min, max, values.data(), values.size(), x(i, j), extrapolate);
return result;
}, D(spline, eval1D));
spline.def("eval1D", [](VectorX &nodes, const VectorX &values,
Float x, bool extrapolate) {
if (nodes.size() != values.size())
throw std::runtime_error("'nodes' and 'values' must have a matching size!");
return eval1D(nodes.data(), values.data(), nodes.size(), x, extrapolate);
}, D(spline, eval1D, 2));
spline.def("eval1D", [](VectorX &nodes, const VectorX &values,
const MatrixX &x, bool extrapolate) -> MatrixX {
if (nodes.size() != values.size())
throw std::runtime_error("'nodes' and 'values' must have a matching size!");
MatrixX result(x.rows(), x.cols());
for (int i=0; i<x.rows(); ++i)
for (int j=0; j<x.cols(); ++j)
result(i, j) = eval1D(nodes.data(), values.data(), nodes.size(), x(i, j), extrapolate);
return result;
}, D(spline, eval1D, 2));
spline.def("invert1D", [](Float min, Float max, const VectorX &values,
Float y) {
return invert1D(min, max, values.data(), values.size(), y);
}, D(spline, invert1D));
spline.def("invert1D", [](const VectorX &nodes, const VectorX &values,
Float y) {
if (nodes.size() != values.size())
throw std::runtime_error("'nodes' and 'values' must have a matching size!");
return invert1D(nodes.data(), values.data(), values.size(), y);
}, D(spline, invert1D, 2));
spline.def("integrate1D", [](Float min, Float max, const VectorX &values) {
VectorX result(values.size());
integrate1D(min, max, values.data(), values.size(), result.data());
return result;
}, D(spline, integrate1D));
spline.def("integrate1D", [](const VectorX &nodes, const VectorX &values) {
if (nodes.size() != values.size())
throw std::runtime_error("'nodes' and 'values' must have a matching size!");
std::vector<Float> result(values.size());
integrate1D(nodes.data(), values.data(), values.size(), result.data());
return result;
}, D(spline, integrate1D, 2));
spline.def("sample1D", [](Float min, Float max, const VectorX &values,
const VectorX &cdf, Float sample) {
if (values.size() != cdf.size())
throw std::runtime_error("'values' and 'cdf' must have a matching size!");
Float pos, fval, pdf;
pos = sample1D(min, max, values.data(), cdf.data(), values.size(),
sample, &fval, &pdf);
return std::make_tuple(pos, fval, pdf);
}, D(spline, sample1D));
spline.def("sample1D", [](const VectorX &nodes, const VectorX &values,
const VectorX &cdf, Float sample) {
if (nodes.size() != values.size() || nodes.size() != cdf.size())
throw std::runtime_error("'nodes', 'values', and 'cdf' must have a matching size!");
Float pos, fval, pdf;
pos = sample1D(nodes.data(), values.data(), cdf.data(), nodes.size(), sample, &fval, &pdf);
return std::make_tuple(pos, fval, pdf);
}, D(spline, sample1D, 2));
spline.def("evalSplineWeights", [](Float min, Float max, size_t size, Float x, bool extrapolate) {
Float weights[4] = { 0, 0, 0, 0 };
ssize_t offset = 0;
bool success = evalSplineWeights(min, max, size, x, offset, weights, extrapolate);
return std::make_tuple(
success, offset, std::make_tuple(weights[0], weights[1], weights[2], weights[3])
);
}, D(spline, evalSplineWeights));
spline.def("evalSplineWeights", [](const VectorX &nodes, Float x, bool extrapolate) {
Float weights[4] = { 0, 0, 0, 0};
ssize_t offset = 0;
bool success = evalSplineWeights(nodes.data(), nodes.size(), x, offset, weights, extrapolate);
return std::make_tuple(
success, offset, std::make_tuple(weights[0], weights[1], weights[2], weights[3])
);
}, D(spline, evalSplineWeights, 2));
spline.def("eval2D", [](const VectorX &nodes1, const VectorX &nodes2,
const MatrixX &values, Float x, Float y,
bool extrapolate) {
if (values.rows() != nodes1.size() || values.cols() != nodes2.size())
throw std::runtime_error("'nodes' and 'values' must have a matching size!");
return eval2D(nodes1.data(), nodes1.size(), nodes2.data(), nodes2.size(), values.data(), y, x, extrapolate);
}, D(spline, eval2D));
spline.def("eval2D", [](const VectorX &nodes1, const VectorX &nodes2,
const MatrixX &values, const MatrixX &x, const MatrixX &y,
bool extrapolate) {
if (values.rows() != nodes1.size() || values.cols() != nodes2.size())
throw std::runtime_error("'nodes' and 'values' must have a matching size!");
if (x.rows() != nodes1.size() || x.cols() != y.size())
throw std::runtime_error("'x' and 'y' must have a matching size!");
MatrixX result(x.rows(), x.cols());
for (int i=0; i<x.rows(); ++i)
for (int j=0; j<x.cols(); ++j)
result(i, j) = eval2D(
nodes1.data(), nodes1.size(), nodes2.data(), nodes2.size(),
values.data(), y(i, j), x(i, j), extrapolate);
return result;
}, D(spline, eval2D));
}
void NGS_DLL_HEADER ExportNgsolve(py::module &m ) {
m.def ("Tcl_Eval", &Ng_TclCmd);
m.def ("_Redraw",
([](bool blocking, double fr)
{
static auto last_time = std::chrono::system_clock::now()-std::chrono::seconds(10);
auto now = std::chrono::system_clock::now();
double elapsed = std::chrono::duration<double>(now-last_time).count();
if (elapsed * fr > 1)
{
Ng_Redraw(blocking);
last_time = std::chrono::system_clock::now();
}
}),
py::arg("blocking")=false, py::arg("fr") = 25
);
m.def ("Draw",[](shared_ptr<MeshAccess> mesh)
{
mesh->SelectMesh();
Ng_TclCmd ("set ::selectvisual mesh;\n");
}
);
m.def("SetVisualization",
[](py::object deformation, py::object min, py::object max,
/* py::object clippnt, */ py::object clipnormal, py::object clipping)
{
bool need_redraw = false;
if (py::extract<bool>(deformation).check())
{
bool def = py::extract<bool>(deformation)();
Ng_TclCmd ("set ::visoptions.deformation "+ToString(def)+";\n");
Ng_TclCmd ("Ng_Vis_Set parameters;\n");
need_redraw = true;
}
if (py::extract<double>(min).check())
{
Ng_TclCmd ("set ::visoptions.autoscale 0\n");
Ng_TclCmd ("set ::visoptions.mminval "+ToString(py::extract<double>(min)())+";\n");
Ng_TclCmd ("Ng_Vis_Set parameters;\n");
need_redraw = true;
}
if (py::extract<double>(max).check())
{
Ng_TclCmd ("set ::visoptions.autoscale 0\n");
Ng_TclCmd ("set ::visoptions.mmaxval "+ToString(py::extract<double>(max)())+";\n");
Ng_TclCmd ("Ng_Vis_Set parameters;\n");
need_redraw = true;
}
if (py::extract<py::tuple>(clipnormal).check())
{
py::tuple norm = py::extract<py::tuple>(clipnormal)();
if (py::len(norm)==3)
{
// cout << "setting clipping normal" << endl;
// tclstring << "set ::viewoptions.clipping.enable 1" << endl
Ng_TclCmd ("set ::viewoptions.clipping.nx "+ToString(py::extract<double>(norm[0])())+";\n");
Ng_TclCmd ("set ::viewoptions.clipping.ny "+ToString(py::extract<double>(norm[1])())+";\n");
Ng_TclCmd ("set ::viewoptions.clipping.nz "+ToString(py::extract<double>(norm[2])())+";\n");
// << "set ::viewoptions.clipping.dist " << clipdist << endl;
need_redraw = true;
}
}
if (py::extract<bool>(clipping).check())
{
bool clip = py::extract<bool>(clipping)();
Ng_TclCmd ("set ::viewoptions.clipping.enable "+ToString(int(clip))+";\n");
Ng_TclCmd ("Ng_SetVisParameters");
need_redraw = true;
}
if (need_redraw)
Ng_Redraw(true);
},
py::arg("deformation")=DummyArgument(),
py::arg("min")=DummyArgument(),
py::arg("max")=DummyArgument(),
// py::arg("clippnt")=DummyArgument(),
py::arg("clipnormal")=DummyArgument(),
py::arg("clipping")=DummyArgument()
)
;
m.def ("Draw",
[](shared_ptr<GridFunction> gf, int sd, bool autoscale, double min, double max)
{
// cout << "in draw" << endl;
// cout << "gf in draw = " << *gf << endl;
// cout << "dims of gf = " << gf->Dimensions() << endl;
gf->GetMeshAccess()->SelectMesh();
// Visualize (gf, gf->GetName());
// netgen::SolutionData * vis = new VisualizeCoefficientFunction (gf->GetMeshAccess(), gf);
auto gfcf = make_shared<GridFunctionCoefficientFunction> (gf);
netgen::SolutionData * vis = new VisualizeCoefficientFunction (gf->GetMeshAccess(), gfcf);
Ng_SolutionData soldata;
Ng_InitSolutionData (&soldata);
soldata.name = gf->GetName().c_str();
soldata.data = 0;
soldata.components = gf -> Dimension();
if (gf->IsComplex()) soldata.components *= 2;
soldata.iscomplex = gf -> IsComplex();
soldata.draw_surface = true; // draw_surf;
soldata.draw_volume = true; // draw_vol;
/*
if (flags.GetDefineFlag("volume"))
soldata.draw_surface = false;
if (flags.GetDefineFlag("boundary"))
soldata.draw_volume = false;
*/
soldata.dist = 1;
soldata.soltype = NG_SOLUTION_VIRTUAL_FUNCTION;
soldata.solclass = vis;
Ng_SetSolutionData (&soldata);
if (gf->Dimension() == 1)
Ng_TclCmd (string("set ::visoptions.scalfunction ")+gf->GetName()+":1;\n");
else
Ng_TclCmd (string("set ::visoptions.vecfunction ")+gf->GetName()+";\n");
Ng_TclCmd (string("set ::visoptions.subdivisions ")+ToString(sd)+";\n");
Ng_TclCmd ("set ::visoptions.autoscale "+ToString(autoscale)+";\n");
if(!autoscale){
Ng_TclCmd ("set ::visoptions.mminval "+ToString(min)+";\n");
Ng_TclCmd ("set ::visoptions.mmaxval "+ToString(max)+";\n");
}
Ng_TclCmd ("Ng_Vis_Set parameters;\n");
Ng_TclCmd ("set ::selectvisual solution;\n");
},
py::arg("gf"),py::arg("sd")=2,py::arg("autoscale")=true,
py::arg("min")=0.0,py::arg("max")=1.0
);
m.def ("Draw", [](shared_ptr<CoefficientFunction> cf, shared_ptr<MeshAccess> ma, string name,
int sd, bool autoscale, double min, double max,
bool draw_vol, bool draw_surf)
{
ma->SelectMesh();
netgen::SolutionData * vis;
if(dynamic_cast<ProlongateCoefficientFunction *>(cf.get()))
{
shared_ptr<CoefficientFunction> wrapper(new ProlongateCoefficientFunctionVisualization(*static_cast<ProlongateCoefficientFunction *>(cf.get())));
vis = new VisualizeCoefficientFunction (ma, wrapper);
}
else
vis = new VisualizeCoefficientFunction (ma, cf);
Ng_SolutionData soldata;
Ng_InitSolutionData (&soldata);
soldata.name = (char*)name.c_str();
soldata.data = 0;
soldata.components = cf -> Dimension();
if (cf->IsComplex()) soldata.components *= 2;
soldata.iscomplex = cf -> IsComplex();
soldata.draw_surface = draw_surf;
soldata.draw_volume = draw_vol;
/*
if (flags.GetDefineFlag("volume"))
soldata.draw_surface = false;
if (flags.GetDefineFlag("boundary"))
soldata.draw_volume = false;
*/
soldata.dist = 1;
soldata.soltype = NG_SOLUTION_VIRTUAL_FUNCTION;
soldata.solclass = vis;
Ng_SetSolutionData (&soldata);
if (cf->Dimension() == 1)
Ng_TclCmd (string("set ::visoptions.scalfunction ")+name+":1;\n");
else
if (cf->Dimension() == 3 || cf->Dimension() == ma->GetDimension())
Ng_TclCmd (string("set ::visoptions.vecfunction ")+name+";\n");
Ng_TclCmd (string("set ::visoptions.subdivisions ")+ToString(sd)+";\n");
Ng_TclCmd ("set ::visoptions.autoscale "+ToString(autoscale)+";\n");
if(!autoscale){
Ng_TclCmd ("set ::visoptions.mminval "+ToString(min)+";\n");
Ng_TclCmd ("set ::visoptions.mmaxval "+ToString(max)+";\n");
}
Ng_TclCmd ("Ng_Vis_Set parameters;\n");
Ng_TclCmd ("set ::selectvisual solution;\n");
},
py::arg("cf"),py::arg("mesh"),py::arg("name"),
py::arg("sd")=2,py::arg("autoscale")=true,
py::arg("min")=0.0,py::arg("max")=1.0,
py::arg("draw_vol")=true,py::arg("draw_surf")=true
);
ExportBVP(m);
ExportDrawFlux(m);
}
void init_ex8(py::module &m) {
py::class_<Object, ref<Object>> obj(m, "Object");
obj.def("getRefCount", &Object::getRefCount);
py::class_<MyObject1, ref<MyObject1>>(m, "MyObject1", obj)
.def(py::init<int>());
m.def("make_object_1", &make_object_1);
m.def("make_object_2", &make_object_2);
m.def("make_myobject1_1", &make_myobject1_1);
m.def("make_myobject1_2", &make_myobject1_2);
m.def("print_object_1", &print_object_1);
m.def("print_object_2", &print_object_2);
m.def("print_object_3", &print_object_3);
m.def("print_object_4", &print_object_4);
m.def("print_myobject1_1", &print_myobject1_1);
m.def("print_myobject1_2", &print_myobject1_2);
m.def("print_myobject1_3", &print_myobject1_3);
m.def("print_myobject1_4", &print_myobject1_4);
py::class_<MyObject2, std::shared_ptr<MyObject2>>(m, "MyObject2")
.def(py::init<int>());
m.def("make_myobject2_1", &make_myobject2_1);
m.def("make_myobject2_2", &make_myobject2_2);
m.def("print_myobject2_1", &print_myobject2_1);
m.def("print_myobject2_2", &print_myobject2_2);
m.def("print_myobject2_3", &print_myobject2_3);
m.def("print_myobject2_4", &print_myobject2_4);
py::class_<MyObject3, std::shared_ptr<MyObject3>>(m, "MyObject3")
.def(py::init<int>());
m.def("make_myobject3_1", &make_myobject3_1);
m.def("make_myobject3_2", &make_myobject3_2);
m.def("print_myobject3_1", &print_myobject3_1);
m.def("print_myobject3_2", &print_myobject3_2);
m.def("print_myobject3_3", &print_myobject3_3);
m.def("print_myobject3_4", &print_myobject3_4);
py::implicitly_convertible<py::int_, MyObject1>();
}