Beispiel #1
0
void IsisMain() {
  // Set the input image, get the camera model
  Process p;
  Cube *icube = p.SetInputCube("FROM");
  Camera *cam = icube->camera();

  // Get the ra/dec range and resolution
  double minRa, maxRa, minDec, maxDec;
  cam->RaDecRange(minRa, maxRa, minDec, maxDec);
  double res = cam->RaDecResolution();

  // Get the center ra/dec
  cam->SetImage(icube->sampleCount() / 2.0, icube->lineCount() / 2.0);
  double centerRa  = cam->RightAscension();
  double centerDec = cam->Declination();

  // Compute the rotation
  cam->SetRightAscensionDeclination(centerRa, centerDec + 2.0 * res);
  double x = cam->Sample() - icube->sampleCount() / 2.0;
  double y = cam->Line() - icube->lineCount() / 2.0;
  double rot = atan2(-y, x) * 180.0 / Isis::PI;
  rot = 90.0 - rot;
  if(rot < 0.0) rot += 360.0;

  // Setup and log results
  PvlGroup results("Range");
  results += PvlKeyword("MinimumRightAscension", toString(minRa), "degrees");
  results += PvlKeyword("MaximumRightAscension", toString(maxRa), "degrees");
  results += PvlKeyword("MinimumDeclination", toString(minDec), "degrees");
  results += PvlKeyword("MaximumDeclination", toString(maxDec), "degrees");
  results += PvlKeyword("MinimumRightAscension", Projection::ToHMS(minRa), "hms");
  results += PvlKeyword("MaximumRightAscension", Projection::ToHMS(maxRa), "hms");
  results += PvlKeyword("MinimumDeclination", Projection::ToDMS(minDec), "dms");
  results += PvlKeyword("MaximumDeclination", Projection::ToDMS(maxDec), "dms");
  results += PvlKeyword("Resolution", toString(res), "degrees/pixel");
  Application::Log(results);

  // Setup and log orientation
  PvlGroup orient("Orientation");
  orient += PvlKeyword("CenterSample", toString(icube->sampleCount() / 2.0));
  orient += PvlKeyword("CenterLine", toString(icube->lineCount() / 2.0));
  orient += PvlKeyword("CenterRightAscension", toString(centerRa), "degrees");
  orient += PvlKeyword("CenterDeclination", toString(centerDec), "degrees");
  orient += PvlKeyword("CelestialNorthClockAngle", toString(rot), "degrees");
  orient += PvlKeyword("Resolution", toString(res), "degrees/pixel");
  Application::Log(orient);

  // Write the output file if requested
  UserInterface ui = Application::GetUserInterface();
  if(ui.WasEntered("TO")) {
    Pvl temp;
    temp.addGroup(results);
    temp.addGroup(orient);
    temp.write(ui.GetFileName("TO", "txt"));
  }

  p.EndProcess();
}
Beispiel #2
0
//Helper function to get camera resolution.
void ComputePixRes () {
  Process p;
  UserInterface &ui = Application::GetUserInterface();
  Cube *latCube = p.SetInputCube("LATCUB");
  Cube *lonCube = p.SetInputCube("LONCUB");
  Brick latBrick(1,1,1,latCube->PixelType());
  Brick lonBrick(1,1,1,lonCube->PixelType());
  latBrick.SetBasePosition(1,1,1);
  latCube->Read(latBrick);

  lonBrick.SetBasePosition(1,1,1);
  lonCube->Read(lonBrick);
      
  double a = latBrick.at(0) * PI/180.0;
  double c = lonBrick.at(0) * PI/180.0;
  
  latBrick.SetBasePosition(latCube->Samples(),latCube->Lines(),1);
  latCube->Read(latBrick);

  lonBrick.SetBasePosition(lonCube->Samples(),lonCube->Lines(),1);     
  lonCube->Read(lonBrick);

  double b = latBrick.at(0) * PI/180.0;
  double d = lonBrick.at(0) * PI/180.0;

  double angle = acos(cos(a) * cos(b) * cos(c - d) + sin(a) * sin(b));
  angle *= 180/PI;

  double pixels = sqrt(pow(latCube->Samples() -1.0, 2.0) + pow(latCube->Lines() -1.0, 2.0));

  p.EndProcess();

  ui.Clear("RESOLUTION");
  ui.PutDouble("RESOLUTION", pixels/angle);

  ui.Clear("PIXRES");
  ui.PutAsString("PIXRES","PPD");
}
Beispiel #3
0
void IsisMain() {

  // Create a process so we can output the noproj'd labels without overwriting
  Process p;

  // Open the user interface and get the input file and the ideal specs file
  UserInterface &ui = Application::GetUserInterface();
  Cube *mcube, *icube;

  // If a MATCH cube is entered, make sure to SetInputCube it first to get the SPICE blobs
  // from it propagated to the TO labels

  // Until polygon blobs are detached without "/" don't propagate them
  p.PropagatePolygons(false);

  if((ui.WasEntered("MATCH"))) {
    mcube = p.SetInputCube("MATCH");
    icube = p.SetInputCube("FROM");
  }
  else {
    mcube = icube = p.SetInputCube("FROM");
  }

  Camera *incam = mcube->camera();

  // Extract Instrument groups from input labels for the output match and noproj'd cubes
  PvlGroup inst = mcube->group("Instrument");
  PvlGroup fromInst = icube->group("Instrument");
  QString groupName = (QString) inst["SpacecraftName"] + "/";
  groupName += (QString) inst.findKeyword("InstrumentId");

  // Get Ideal camera specifications
  FileName specs;
  if((ui.WasEntered("SPECS"))) {
    specs = ui.GetFileName("SPECS");
  }
  else {
    specs = "$base/applications/noprojInstruments???.pvl";
    specs = specs.highestVersion();
  }
  Pvl idealSpecs(specs.expanded());
  PvlObject obSpecs = idealSpecs.findObject("IdealInstrumentsSpecifications");

  PvlGroup idealGp = obSpecs.findGroup(groupName);
  double transx, transy, transl, transs;
  transx = transy = transl = transs = 0.;
  if(idealGp.hasKeyword("TransX")) transx = idealGp["TransX"];
  if(idealGp.hasKeyword("TransY")) transy = idealGp["TransY"];
  if(idealGp.hasKeyword("ItransL")) transl = idealGp["ItransL"];
  if(idealGp.hasKeyword("ItransS")) transs = idealGp["ItransS"];
  int detectorSamples = mcube->sampleCount();
  if(idealGp.hasKeyword("DetectorSamples")) detectorSamples = idealGp["DetectorSamples"];
  int numberLines = mcube->lineCount();
  int numberBands = mcube->bandCount();

  if(idealGp.hasKeyword("DetectorLines")) numberLines = idealGp["DetectorLines"];

  int xDepend = incam->FocalPlaneMap()->FocalPlaneXDependency();

  // Get output summing mode
  if(ui.GetString("SOURCE") == "FROMMATCH") {
    LoadMatchSummingMode();
  }
  else if(ui.GetString("SOURCE") == "FROMINPUT") {
    LoadInputSummingMode();
  }

  double pixPitch = incam->PixelPitch() * ui.GetDouble("SUMMINGMODE");
  detectorSamples /= (int)(ui.GetDouble("SUMMINGMODE"));
  // Get the user options
  int sampleExpansion = int((ui.GetDouble("SAMPEXP") / 100.) * detectorSamples + .5);
  int lineExpansion = int((ui.GetDouble("LINEEXP") / 100.) * numberLines + .5);
  QString instType;

  // Adjust translations for summing mode
  transl /= ui.GetDouble("SUMMINGMODE");
  transs /= ui.GetDouble("SUMMINGMODE");

  detectorSamples += sampleExpansion;
  numberLines += lineExpansion;

  // Determine whether this ideal camera is a line scan or framing camera and
  // set the instrument id and exposure
  int detectorLines;
  int expandFlag;

  if(incam->DetectorMap()->LineRate() != 0.0) {
    instType = "LINESCAN";
    // Isis3 line rate is always in seconds so convert to milliseconds for the
    // Ideal instrument
    detectorLines = 1;
    expandFlag = 1;
  }
  else {
    instType = "FRAMING";
    detectorLines = numberLines;
    expandFlag = 0;
    // Framing cameras don't need exposure time
  }

  // Adjust focal plane translations with line expansion for scanners since
  // the CCD is only 1 line
  if(expandFlag) {
    transl += lineExpansion / 2;

    if(xDepend == CameraFocalPlaneMap::Line) {
      transx -= lineExpansion / 2.*pixPitch * expandFlag;
    }
    else {
      transy -= lineExpansion / 2.*pixPitch * expandFlag;
    }
  }

  // Get the start time for parent line 1
  AlphaCube alpha(*icube);
  double sample = alpha.BetaSample(.5);
  double line = alpha.BetaLine(.5);
  incam->SetImage(sample, line);
  double et = incam->time().Et();

  // Get the output file name and set its attributes
  CubeAttributeOutput cao;

  // Can we do a regular label? Didn't work on 12-15-2006
  cao.setLabelAttachment(Isis::DetachedLabel);

  // Determine the output image size from
  //   1) the idealInstrument pvl if there or
  //   2) the input size expanded by user specified percentage
  Cube *ocube = p.SetOutputCube("match.cub", cao, 1, 1, 1);

  // Extract the times and the target from the instrument group
  QString startTime = inst["StartTime"];
  QString stopTime;
  if(inst.hasKeyword("StopTime")) stopTime = (QString) inst["StopTime"];

  QString target = inst["TargetName"];

  // rename the instrument groups
  inst.setName("OriginalInstrument");
  fromInst.setName("OriginalInstrument");

  // add it back to the IsisCube object under a new group name
  ocube->putGroup(inst);

  // and remove the version from the IsisCube Object
  ocube->deleteGroup("Instrument");

  // Now rename the group back to the Instrument group and clear out old keywords
  inst.setName("Instrument");
  inst.clear();

  // Add keywords for the "Ideal" instrument
  Isis::PvlKeyword key("SpacecraftName", "IdealSpacecraft");
  inst.addKeyword(key);

  key.setName("InstrumentId");
  key.setValue("IdealCamera");
  inst.addKeyword(key);

  key.setName("TargetName");
  key.setValue(target);
  inst.addKeyword(key);

  key.setName("SampleDetectors");
  key.setValue(Isis::toString(detectorSamples));
  inst.addKeyword(key);

  key.setName("LineDetectors");
  key.setValue(Isis::toString(detectorLines));
  inst.addKeyword(key);

  key.setName("InstrumentType");
  key.setValue(instType);
  inst.addKeyword(key);

  Pvl &ocubeLabel = *ocube->label();
  PvlObject *naifKeywordsObject = NULL;

  if (ocubeLabel.hasObject("NaifKeywords")) {
    naifKeywordsObject = &ocubeLabel.findObject("NaifKeywords");

    // Clean up the naif keywords object... delete everything that isn't a radii
    for (int keyIndex = naifKeywordsObject->keywords() - 1; keyIndex >= 0; keyIndex--) {
      QString keyName = (*naifKeywordsObject)[keyIndex].name();
      
      if (!keyName.contains("RADII")) {
        naifKeywordsObject->deleteKeyword(keyIndex);
      }
    }

    // Clean up the kernels group... delete everything that isn't internalized or the orig frame
    //   code
    PvlGroup &kernelsGroup = ocube->group("Kernels");
    for (int keyIndex = kernelsGroup.keywords() - 1; keyIndex >= 0; keyIndex--) {
      PvlKeyword &kernelsKeyword = kernelsGroup[keyIndex];

      bool isTable = false;
      bool isFrameCode = kernelsKeyword.isNamed("NaifFrameCode") ||
                         kernelsKeyword.isNamed("NaifIkCode");
      bool isShapeModel = kernelsKeyword.isNamed("ShapeModel");

      for (int keyValueIndex = 0; keyValueIndex < kernelsKeyword.size(); keyValueIndex++) {
        if (kernelsKeyword[keyValueIndex] == "Table") {
          isTable = true;
        }
      }

      if (!isTable && !isFrameCode && !isShapeModel) {
        kernelsGroup.deleteKeyword(keyIndex);
      }
    }
  }

  if (naifKeywordsObject) {
    naifKeywordsObject->addKeyword(PvlKeyword("IDEAL_FOCAL_LENGTH", toString(incam->FocalLength())),
                                   Pvl::Replace);
  }
  else {
    inst.addKeyword(PvlKeyword("FocalLength", toString(incam->FocalLength()), "millimeters"));
  }

  double newPixelPitch = incam->PixelPitch() * ui.GetDouble("SUMMINGMODE");
  if (naifKeywordsObject) {
    naifKeywordsObject->addKeyword(PvlKeyword("IDEAL_PIXEL_PITCH", toString(newPixelPitch)),
                                   Pvl::Replace);
  }
  else {
    inst.addKeyword(PvlKeyword("PixelPitch", toString(newPixelPitch), "millimeters"));
  }

  key.setName("EphemerisTime");
  key.setValue(Isis::toString(et), "seconds");
  inst.addKeyword(key);

  key.setName("StartTime");
  key.setValue(startTime);
  inst.addKeyword(key);

  if(stopTime != "") {
    key.setName("StopTime");
    key.setValue(stopTime);
    inst.addKeyword(key);
  }

  key.setName("FocalPlaneXDependency");
  key.setValue(toString((int)incam->FocalPlaneMap()->FocalPlaneXDependency()));
  inst.addKeyword(key);

  int xDependency = incam->FocalPlaneMap()->FocalPlaneXDependency();

  double newInstrumentTransX = incam->FocalPlaneMap()->SignMostSigX();
  inst.addKeyword(PvlKeyword("TransX", toString(newInstrumentTransX)));

  double newInstrumentTransY = incam->FocalPlaneMap()->SignMostSigY();
  inst.addKeyword(PvlKeyword("TransY", toString(newInstrumentTransY)));

  storeSpice(&inst, naifKeywordsObject, "TransX0", "IDEAL_TRANSX", transx,
             newPixelPitch * newInstrumentTransX, (xDependency == CameraFocalPlaneMap::Sample));

  storeSpice(&inst, naifKeywordsObject, "TransY0", "IDEAL_TRANSY", transy,
             newPixelPitch * newInstrumentTransY, (xDependency == CameraFocalPlaneMap::Line));

  double transSXCoefficient = 1.0 / newPixelPitch * newInstrumentTransX;
  double transLXCoefficient = 1.0 / newPixelPitch * newInstrumentTransY;

  if (xDependency == CameraFocalPlaneMap::Line) {
    swap(transSXCoefficient, transLXCoefficient);
  }

  storeSpice(&inst, naifKeywordsObject, "TransS0", "IDEAL_TRANSS",
             transs, transSXCoefficient, (xDependency == CameraFocalPlaneMap::Sample));
  storeSpice(&inst, naifKeywordsObject, "TransL0", "IDEAL_TRANSL",
             transl, transLXCoefficient, (xDependency == CameraFocalPlaneMap::Line));

  if(instType == "LINESCAN") {
    key.setName("ExposureDuration");
    key.setValue(Isis::toString(incam->DetectorMap()->LineRate() * 1000.), "milliseconds");
    inst.addKeyword(key);
  }

  key.setName("MatchedCube");
  key.setValue(mcube->fileName());
  inst.addKeyword(key);

  ocube->putGroup(inst);

  p.EndProcess();

// Now adjust the label to fake the true size of the image to match without
// taking all the space it would require for the image data
  Pvl label;
  label.read("match.lbl");
  PvlGroup &dims = label.findGroup("Dimensions", Pvl::Traverse);
  dims["Lines"] = toString(numberLines);
  dims["Samples"] = toString(detectorSamples);
  dims["Bands"] = toString(numberBands);
  label.write("match.lbl");

// And run cam2cam to apply the transformation
  QString parameters;
  parameters += " FROM= " + ui.GetFileName("FROM");
  parameters += " MATCH= " + QString("match.cub");
  parameters += " TO= " + ui.GetFileName("TO");
  parameters += " INTERP=" + ui.GetString("INTERP");
  ProgramLauncher::RunIsisProgram("cam2cam", parameters);

//  Cleanup by deleting the match files
  remove("match.History.IsisCube");
  remove("match.lbl");
  remove("match.cub");
  remove("match.OriginalLabel.IsisCube");
  remove("match.Table.BodyRotation");
  remove("match.Table.HiRISE Ancillary");
  remove("match.Table.HiRISE Calibration Ancillary");
  remove("match.Table.HiRISE Calibration Image");
  remove("match.Table.InstrumentPointing");
  remove("match.Table.InstrumentPosition");
  remove("match.Table.SunPosition");

// Finally finish by adding the OriginalInstrument group to the TO cube
  Cube toCube;
  toCube.open(ui.GetFileName("TO"), "rw");
// Extract label and create cube object
  Pvl *toLabel = toCube.label();
  PvlObject &o = toLabel->findObject("IsisCube");
  o.deleteGroup("OriginalInstrument");
  o.addGroup(fromInst);
  toCube.close();
}
Beispiel #4
0
void IsisMain() {

  QString projName;

  Process pHist;
  Cube *icube = pHist.SetInputCube("FROM");

  // Check to see if the input cube looks like a HiRISE RDR
  if (icube->bandCount() > 3) {
    QString msg = "Input file [" +
                 Application::GetUserInterface().GetFileName("FROM") +
                 "] does not appear to be a HiRISE RDR product. Number of " +
                 "bands is greater than 3";
    throw IException(IException::Programmer, msg, _FILEINFO_);
  }

  // Setup to get a histogram for each band
  g_min = new double[icube->bandCount()];
  g_max = new double[icube->bandCount()];

  UserInterface &ui = Application::GetUserInterface();

  // Determine if the data is to be converted to JPEG2000
  IString enctype = ui.GetString("ENCODING_TYPE");
  enctype.DownCase();

  for (int band = 1; band <= icube->bandCount(); ++band) {

    if (ui.GetString("TYPE").compare("AUTOMATIC") == 0) {
      // Set up a histogram for this band. This call sets the input range
      // by making an initial stats pass to find the data min and max
      Histogram hist(*icube, band, pHist.Progress());

      // Loop and accumulate histogram
      pHist.Progress()->SetText("Gathering Histogram");
      pHist.Progress()->SetMaximumSteps(icube->lineCount());
      pHist.Progress()->CheckStatus();
      LineManager line(*icube);
      for (int i = 1; i <= icube->lineCount(); i++) {
        line.SetLine(i, band);
        icube->read(line);
        hist.AddData(line.DoubleBuffer(), line.size());
        pHist.Progress()->CheckStatus();
      }

      // get the requested cumulative percentages
      g_min[band-1] = ui.GetDouble("MINPER") == 0.0 ? hist.Minimum() : hist.Percent(ui.GetDouble("MINPER"));
      g_max[band-1] = ui.GetDouble("MAXPER") == 100.0 ? hist.Maximum() : hist.Percent(ui.GetDouble("MAXPER"));
    }
    else {
      g_min[band-1] = ui.GetDouble("MIN");
      g_max[band-1] = ui.GetDouble("MAX");
    }
  }

  // Find the minimum min and maximum max for all bands
  double minmin = g_min[0];
  double maxmax = g_max[0];
  for (int band = 1; band < icube->bandCount(); ++band) {
    if (g_min[band] < minmin) minmin = g_min[band];
    if (g_max[band] > maxmax) maxmax = g_max[band];
  }

  pHist.EndProcess();

  // Set up for writing the data to a PDS formatted file
  ProcessExportPds p;
  Cube *icube2 = p.SetInputCube("FROM");

  if (enctype.Equal("jp2")) {
    g_jp2buf = new char* [icube2->bandCount()];
    FileName lblFile(ui.GetFileName("TO"));
    QString lblFileName = lblFile.path() + "/" + lblFile.baseName() + ".lbl";
    p.SetDetached(lblFileName);
    p.setFormat(ProcessExport::JP2);
  }

  // Set the output pixel type and the special pixel values
  int nbits = ui.GetInteger("BITS");
  if (nbits == 8) {
    if (enctype.Equal("jp2")) {
      for (int i = 0; i < icube2->bandCount(); i++) {
        g_jp2buf[i] = new char[icube2->sampleCount()];
      }
    }
    g_oType = Isis::UnsignedByte;
    p.SetOutputType(g_oType);
    p.SetOutputRange(VALID_MIN1, VALID_MAX1);
    p.SetOutputNull(NULL1);
    p.SetOutputLis(LOW_INSTR_SAT1);
    p.SetOutputLrs(LOW_REPR_SAT1);
    p.SetOutputHis(HIGH_INSTR_SAT1);
    p.SetOutputHrs(HIGH_REPR_SAT1);
  }
  else if (nbits == 16) {
    if (enctype.Equal("jp2")) {
      for (int i = 0; i < icube2->bandCount(); i++) {
        g_jp2buf[i] = new char[icube2->sampleCount()*2];
      }
    }
    g_oType = UnsignedWord;
    p.SetOutputType(g_oType);
    p.SetOutputRange(VALID_MINU2, VALID_MAXU2);
    p.SetOutputNull(NULLU2);
    p.SetOutputLis(LOW_INSTR_SATU2);
    p.SetOutputLrs(LOW_REPR_SATU2);
    p.SetOutputHis(HIGH_INSTR_SATU2);
    p.SetOutputHrs(HIGH_REPR_SATU2);
  }
  else {
    if (enctype.Equal("jp2")) {
      for (int i = 0; i < icube2->bandCount(); i++) {
        g_jp2buf[i] = new char[icube2->sampleCount()*2];
      }
    }
    g_oType = UnsignedWord;
    p.SetOutputType(g_oType);
    p.SetOutputRange(3.0, pow(2.0, (double)(nbits)) - 1.0 - 2.0);
    p.SetOutputNull(0);
    p.SetOutputLrs(1);
    p.SetOutputLis(2);
    p.SetOutputHis(pow(2.0, (double)(nbits)) - 1.0 - 1.0);
    p.SetOutputHrs(pow(2.0, (double)(nbits)) - 1.0);
  }
  p.SetOutputEndian(Isis::Msb);
  p.SetInputRange(minmin, maxmax);

  // Get the PDS label from the process
  ProcessExportPds::PdsFileType type;
  if (enctype.Equal("jp2")) {
    type = ProcessExportPds::JP2Image;
  }
  else {
    type = ProcessExportPds::Image;
  }
  Pvl &pdsLabel = p.StandardPdsLabel(type);

  // Translate the keywords from the input cube label that go in the PDS label
  PvlTranslationManager cubeLab(*(icube2->label()),
                                "$mro/translations/hirisePdsRdrCubeLabel.trn");
  cubeLab.Auto(pdsLabel);

  // Translate the keywords from the original EDR PDS label that go in
  // this RDR PDS label
  OriginalLabel origBlob;
  icube2->read(origBlob);
  Pvl origLabel;
  PvlObject origLabelObj = origBlob.ReturnLabels();
  origLabelObj.setName("OriginalLabelObject");
  origLabel.addObject(origLabelObj);
  PvlTranslationManager orig(origLabel,
                             "$mro/translations/hirisePdsRdrOriginalLabel.trn");
  orig.Auto(pdsLabel);

  // Add labels to the PDS product that could not be handled by the translater

  if (ui.WasEntered("RATIONALE_DESC")) {
    pdsLabel.addKeyword(
        PvlKeyword("RATIONALE_DESC", ui.GetString("RATIONALE_DESC")),
        Pvl::Replace);
  }

  // Add PRODUCT_CREATION_TIME
  time_t startTime = time(NULL);
  struct tm *tmbuf = gmtime(&startTime);
  char timestr[80];
  strftime(timestr, 80, "%Y-%m-%dT%H:%M:%S", tmbuf);
  QString dateTime = (QString) timestr;
  iTime tmpDateTime(dateTime);
  PvlGroup &timeParam = pdsLabel.findGroup("TIME_PARAMETERS");
  timeParam += PvlKeyword("PRODUCT_CREATION_TIME", tmpDateTime.UTC());

  // Add the N/A constant keyword to the ROOT
  pdsLabel += PvlKeyword("NOT_APPLICABLE_CONSTANT", toString(-9998));

  // Add SOFTWARE_NAME to the ROOT
  QString sfname;
  sfname.clear();
  sfname += "Isis " + Application::Version() + " " +
            Application::GetUserInterface().ProgramName();
  pdsLabel += PvlKeyword("SOFTWARE_NAME", sfname);

  // Add the PRODUCT_VERSION_ID from the user parameter VERSION
  pdsLabel += PvlKeyword("PRODUCT_VERSION_ID", ui.GetString("VERSION"));

  // Add MRO:CCD_FLAG, MRO:BINNING, MRO:TDI
  // As pulled from the input Isis cube, the values are in CPMM order, so
  // convert them to CCD order
  PvlKeyword ccdFlag("MRO:CCD_FLAG");
  PvlKeyword &cpmmFlag = origLabel.findObject("OriginalLabelObject").
                         findGroup("INSTRUMENT_SETTING_PARAMETERS").
                         findKeyword("MRO:POWERED_CPMM_FLAG");
  PvlKeyword ccdBin("MRO:BINNING");
  PvlKeyword &cpmmBin = icube2->label()->findObject("IsisCube").
                        findGroup("Mosaic")["cpmmSummingFlag"];
  PvlKeyword ccdTdi("MRO:TDI");
  PvlKeyword &cpmmTdi = icube2->label()->findObject("IsisCube").
                        findGroup("Mosaic")["cpmmTdiFlag"];
  PvlKeyword ccdSpecial("MRO:SPECIAL_PROCESSING_FLAG");
  PvlKeyword &cpmmSpecial = icube2->label()->findObject("IsisCube").
                            findGroup("Mosaic")["SpecialProcessingFlag"];
  for (int ccd = 0; ccd < 14; ++ccd) {
    const unsigned int cpmmByCcd[] = {0, 1, 2, 3, 5, 8, 10,
                                      11, 12, 13, 6, 7, 4, 9};
    ccdFlag.addValue(cpmmFlag[cpmmByCcd[ccd]]);
    ccdBin.addValue(cpmmBin[cpmmByCcd[ccd]] != "Null" ? cpmmBin[cpmmByCcd[ccd]] : "-9998");
    ccdTdi.addValue(cpmmTdi[cpmmByCcd[ccd]] != "Null" ? cpmmTdi[cpmmByCcd[ccd]] : "-9998");
    IString tmp = cpmmSpecial[cpmmByCcd[ccd]];
    tmp.Trim("\"");
    ccdSpecial.addValue(tmp.ToQt());
  }

  if (!pdsLabel.hasGroup("INSTRUMENT_SETTING_PARAMETERS")) {
    pdsLabel.addGroup(PvlGroup("INSTRUMENT_SETTING_PARAMETERS"));
  }
  pdsLabel.findGroup("INSTRUMENT_SETTING_PARAMETERS") += ccdFlag;
  pdsLabel.findGroup("INSTRUMENT_SETTING_PARAMETERS") += ccdBin;
  pdsLabel.findGroup("INSTRUMENT_SETTING_PARAMETERS") += ccdTdi;
  pdsLabel.findGroup("INSTRUMENT_SETTING_PARAMETERS") += ccdSpecial;

  // Add/modify projection info if there is a projection
  if (pdsLabel.hasObject("IMAGE_MAP_PROJECTION")) {
    PvlObject &mapObject = pdsLabel.findObject("IMAGE_MAP_PROJECTION");
    mapObject += PvlKeyword("^DATA_SET_MAP_PROJECTION", "DSMAP.CAT");

    // Add the HiRISE comment to the CENTER_LATITUDE keyword
    PvlKeyword &clat = mapObject["CENTER_LATITUDE"];
    clat.addComment("/* NOTE:  CENTER_LATITUDE and CENTER_LONGITUDE describe the location  */");
    clat.addComment("/* of the center of projection, which is not necessarily equal to the */");
    clat.addComment("/* location of the center point of the image.                         */");

    if (mapObject.hasKeyword("CENTER_LATITUDE")) {
      PvlKeyword &centerLat = mapObject["CENTER_LATITUDE"];
      // if (centerLat[0] == "N/A") centerLat = -9998;
      if (centerLat[0] == "N/A") mapObject.deleteKeyword("CENTER_LATITUDE");
    }
    if (mapObject.hasKeyword("CENTER_LONGITUDE")) {
      PvlKeyword &centerLon = mapObject["CENTER_LONGITUDE"];
      // if (centerLon[0] == "N/A") centerLon = -9998;
      if (centerLon[0] == "N/A") mapObject.deleteKeyword("CENTER_LONGITUDE");
    }
    if (mapObject.hasKeyword("REFERENCE_LATITUDE")) {
      PvlKeyword &refLat = mapObject["REFERENCE_LATITUDE"];
      // if (refLat[0] == "N/A") refLat = -9998;
      if (refLat[0] == "N/A") mapObject.deleteKeyword("REFERENCE_LATITUDE");
    }
    if (mapObject.hasKeyword("REFERENCE_LONGITUE")) {
      PvlKeyword &refLon = mapObject["REFERENCE_LONGITUDE"];
      // if (refLon[0] == "N/A") refLon = -9998;
      if (refLon[0] == "N/A") mapObject.deleteKeyword("REFERENCE_LONGITUDE");
    }
    if (mapObject.hasKeyword("FIRST_STANDARD_PARALLEL")) {
      PvlKeyword &firstSP = mapObject["FIRST_STANDARD_PARALLEL"];
      // if (firstSP[0] == "N/A") firstSP = -9998;
      if (firstSP[0] == "N/A") mapObject.deleteKeyword("FIRST_STANDARD_PARALLEL");
    }
    if (mapObject.hasKeyword("SECOND_STANDARD_PARALLEL")) {
      PvlKeyword &secondSP = mapObject["SECOND_STANDARD_PARALLEL"];
      // if (secondSP[0] == "N/A") secondSP = -9998;
      if (secondSP[0] == "N/A") mapObject.deleteKeyword("SECOND_STANDARD_PARALLEL");
    }

    // For Equirectangular ONLY
    // Modify the radii in the pds label to use the radius at the center latitude
    // instead of the target radii from NAIF
    if (mapObject["MAP_PROJECTION_TYPE"][0] == "EQUIRECTANGULAR") {
      Projection *proj = ProjectionFactory::CreateFromCube(*icube2);
      PvlGroup &mapping = icube2->label()->findGroup("MAPPING", Pvl::Traverse);
      double radius = proj->LocalRadius((double)mapping["CenterLatitude"]) / 1000.0;
      mapObject["A_AXIS_RADIUS"].setValue(toString(radius), "KM");
      mapObject["B_AXIS_RADIUS"].setValue(toString(radius), "KM");
      mapObject["C_AXIS_RADIUS"].setValue(toString(radius), "KM");
    }

    projName = mapObject["MAP_PROJECTION_TYPE"][0];
  }

  // Calculate the min/max per band keywords
  // These come from the input real DN and are converted to the PDS file DN
  // The input to output mapping is opposite from the one above
  double slope = (p.GetOutputMaximum() - p.GetOutputMinimum()) / (maxmax - minmin);
  double intercept = p.GetOutputMaximum() - slope * maxmax;
  PvlKeyword minimum("MRO:MINIMUM_STRETCH", toString(slope * g_min[0] + intercept));
  PvlKeyword maximum("MRO:MAXIMUM_STRETCH", toString(slope * g_max[0] + intercept));
  for (int band = 1; band < icube2->bandCount(); ++band) {
    minimum += toString(slope * g_min[band] + intercept);
    maximum += toString(slope * g_max[band] + intercept);
  }

  if (enctype.Equal("jp2")) {
    // Add keywords to the PDS JP2 IMAGE object
    PvlObject &imagejp2 = pdsLabel.findObject("UNCOMPRESSED_FILE").findObject("IMAGE");

    // Add the HiRISE specific description of the IMAGE object
    imagejp2 += PvlKeyword("DESCRIPTION", "HiRISE projected and mosaicked product");

    // Add the SCALLING_FACTOR and OFFSET keywords
    imagejp2.addKeyword(PvlKeyword("SCALING_FACTOR", toString(slope)), Pvl::Replace);
    imagejp2.addKeyword(PvlKeyword("OFFSET", toString(intercept)), Pvl::Replace);

    // Reformat some keyword units in the image object
    // This is lame, but PDS units are difficult to work with, so for now???
    PvlKeyword &oldFilterNamejp2 = imagejp2["FILTER_NAME"];
    PvlKeyword newFilterName("FILTER_NAME");
    for (int val = 0; val < oldFilterNamejp2.size(); ++val) {
      QString  filtname(oldFilterNamejp2[val].toUpper());
      if (filtname == "BLUEGREEN") filtname = "BLUE-GREEN";
      else if (filtname == "NEARINFRARED") filtname = "NEAR-INFRARED";
      newFilterName.addValue(filtname);
    }
    imagejp2.addKeyword(newFilterName, Pvl::Replace);

    PvlKeyword &oldCenterjp2 = imagejp2["CENTER_FILTER_WAVELENGTH"];
    PvlKeyword newCenter("CENTER_FILTER_WAVELENGTH");
    for (int val = 0; val < oldCenterjp2.size(); ++val) {
      if (((IString)(oldCenterjp2.unit(val))).UpCase() == "NANOMETERS") {
        newCenter.addValue(oldCenterjp2[val], "NM");
      }
      else {
        newCenter.addValue(oldCenterjp2[val], oldCenterjp2.unit(val));
      }
    }
    imagejp2.addKeyword(newCenter, Pvl::Replace);

    PvlKeyword &oldBandWidthjp2 = imagejp2["BAND_WIDTH"];
    PvlKeyword newBandWidth("BAND_WIDTH");
    for (int val = 0; val < oldBandWidthjp2.size(); ++val) {
      if (((IString)(oldBandWidthjp2.unit(val))).UpCase() == "NANOMETERS") {
        newBandWidth.addValue(oldBandWidthjp2[val], "nm");
      }
      else {
        newBandWidth.addValue(oldBandWidthjp2[val], oldBandWidthjp2.unit(val));
      }
    }
    imagejp2.addKeyword(newBandWidth, Pvl::Replace);

    // Add the min/max per band keywords
    imagejp2 += minimum;
    imagejp2 += maximum;

    // Modify the default SAMPLE_BIT_MASK keyword placed there by the
    // ProcessExportPds
    if (nbits != 8 && nbits != 16) {
      imagejp2.addKeyword(PvlKeyword("SAMPLE_BIT_MASK",
                                     toString((int)pow(2.0, (double)ui.GetInteger("BITS")) - 1)),
                          Pvl::Replace);
    }
  }
  else {
    // Add keywords to the PDS IMAGE object
    PvlObject &image = pdsLabel.findObject("IMAGE");

    // Add the HiRISE specific description of the IMAGE object
    image += PvlKeyword("DESCRIPTION", "HiRISE projected and mosaicked product");

    /**
     *  Calculate the SCALING_FACTOR and OFFSET keywords
     *  Set these so the unsigned 16bit PDS disk values can be converted back
     *  to the correct values Isis had
     *  These keywords are used to map stored/disk values to the correct values so,
     *  the input(x axis) values are the unsigned Xbit values from the PDS file
     */
    // ??? unneccessary calculation - this is done by ProcessExportPds class.
    double slope = (maxmax - minmin) / (p.GetOutputMaximum() - p.GetOutputMinimum()); 
    double intercept = maxmax - slope * p.GetOutputMaximum();
    image.addKeyword(PvlKeyword("SCALING_FACTOR", toString(slope)), Pvl::Replace);
    image.addKeyword(PvlKeyword("OFFSET", toString(intercept)), Pvl::Replace);

    // Reformat some keyword units in the image object
    // This is lame, but PDS units are difficult to work with, so for now
    PvlKeyword &oldFilterName = image["FILTER_NAME"];
    PvlKeyword newFilterName("FILTER_NAME");
    for (int val = 0; val < oldFilterName.size(); ++val) {
      QString  filtname(oldFilterName[val].toUpper());
      if (filtname == "BLUEGREEN") filtname = "BLUE-GREEN";
      else if (filtname == "NEARINFRARED") filtname = "NEAR-INFRARED";
      newFilterName.addValue(filtname);
    }
    image.addKeyword(newFilterName, Pvl::Replace);

    PvlKeyword &oldCenter = image["CENTER_FILTER_WAVELENGTH"];
    PvlKeyword newCenter("CENTER_FILTER_WAVELENGTH");
    for (int val = 0; val < oldCenter.size(); ++val) {
      if (((IString)(oldCenter.unit(val))).UpCase() == "NANOMETERS") {
        newCenter.addValue(oldCenter[val], "NM");
      }
      else {
        newCenter.addValue(oldCenter[val], oldCenter.unit(val));
      }
    }
    image.addKeyword(newCenter, Pvl::Replace);

    PvlKeyword &oldBandWidth = image["BAND_WIDTH"];
    PvlKeyword newBandWidth("BAND_WIDTH");
    for (int val = 0; val < oldBandWidth.size(); ++val) {
      if (((IString)(oldBandWidth.unit(val))).UpCase() == "NANOMETERS") {
        newBandWidth.addValue(oldBandWidth[val], "NM");
      }
      else {
        newBandWidth.addValue(oldBandWidth[val], oldBandWidth.unit(val));
      }
    }
    image.addKeyword(newBandWidth, Pvl::Replace);

    // Add the min/max per band keywords
    image += minimum;
    image += maximum;

    // Modify the default SAMPLE_BIT_MASK keyword placed there by the
    // ProcessExportPds
    if (nbits != 8 && nbits != 16) {
      image.addKeyword(PvlKeyword("SAMPLE_BIT_MASK",
                                  toString((int)pow(2.0, (double)ui.GetInteger("BITS")) - 1)),
                       Pvl::Replace);
    }
  }

  // Modify the units in the viewing_parameters group
//  if (pdsLabel.hasGroup("VIEWING_PARAMETERS")) {
//    PvlGroup &viewGroup = pdsLabel.findGroup("VIEWING_PARAMETERS");

//    PvlKeyword &incidence = viewGroup["INCIDENCE_ANGLE"];
//    IString tstr = incidence.unit();
//    if (tstr.UpCase() == "DEG") incidence.setValue((QString)incidence, "deg");

//    PvlKeyword &emission = viewGroup["EMISSION_ANGLE"];
//    tstr = emission.unit();
//    if (tstr.UpCase() == "DEG") emission.setValue((QString)emission, "deg");

//    PvlKeyword &phase = viewGroup["PHASE_ANGLE"];
//    tstr = phase.unit();
//    if (tstr.UpCase() == "DEG") phase.setValue((QString)phase, "deg");

//    PvlKeyword &solarLon = viewGroup["SOLAR_LONGITUDE"];
//    tstr = solarLon.unit();   q
//    if (tstr.UpCase() == "DEG") solarLon.setValue((QString)solarLon, "deg");

//    PvlKeyword &localTime = viewGroup["LOCAL_TIME"];
//    tstr = localTime.unit();
//    if (tstr.UpCase() == "LOCALDAY/24") localTime.setValue((QString)localTime, "local day/24");
//  }

  // Add a keyword type (i.e., QString, bool, int...) file to the PDS label Pvl
  PvlFormat *formatter = pdsLabel.format();
  formatter->add("$mro/translations/hirisePdsRdrExtras.typ");

  // Add an output format template (group, object, & keyword output order) to
  // the PDS PVL
  if (projName == "EQUIRECTANGULAR") {
    if (enctype.Equal("jp2")) {
      pdsLabel.setFormatTemplate("$mro/templates/labels/hirisePdsRdrEquiJP2.pft");
    }
    else {
      pdsLabel.setFormatTemplate("$mro/templates/labels/hirisePdsRdrEqui.pft");
    }
  }
  else {
    if (enctype.Equal("jp2")) {
      pdsLabel.setFormatTemplate("$mro/templates/labels/hirisePdsRdrPolarJP2.pft");
    }
    else {
      pdsLabel.setFormatTemplate("$mro/templates/labels/hirisePdsRdrPolar.pft");
    }
  }

  // Open the output PDS file and dump the label and cube data
  if (enctype.Equal("jp2")) {
    p.OutputDetachedLabel();
    g_jp2Encoder = new JP2Encoder(ui.GetFileName("TO"), icube2->sampleCount(),
                                 icube2->lineCount(), icube2->bandCount(), g_oType);
    g_jp2Encoder->OpenFile();
    g_jp2ns = icube2->sampleCount();
    g_jp2nb = icube2->bandCount();
    g_jp2band = 0;
    p.StartProcess(writeJP2Image);
    p.EndProcess();
    delete g_jp2Encoder;
    for (int i = 0; i < icube2->bandCount(); i++) {
      delete [] g_jp2buf[i];
    }
  }
  else {
    FileName outFile(ui.GetFileName("TO"));
    ofstream oCube(outFile.expanded().toAscii().data());
    p.OutputLabel(oCube);
    p.StartProcess(oCube);
    oCube.close();
    p.EndProcess();
  }

  delete [] g_min;
  delete [] g_max;
}
Beispiel #5
0
void IsisMain() {
  // Get the list of cubes to mosaic
  FileList imageList;
  UserInterface &ui = Application::GetUserInterface();
  imageList.Read(ui.GetFilename("FROMLIST"));
  if (imageList.size() < 1) {
    std::string msg = "The list file [" + ui.GetFilename("FROMLIST") +
                 "] does not contain any data";
    throw iException::Message(iException::User,msg,_FILEINFO_);
  }

  // Make sure the user enters a "OUTSTATS" file if the CALCULATE option 
  // is selected
  std::string processOpt = ui.GetString("PROCESS");
  if (processOpt == "CALCULATE") {
    if (!ui.WasEntered("OUTSTATS")) {
      std::string msg = "If the CALCULATE option is selected, you must enter";
      msg += " an OUTSTATS file";
      throw iException::Message(iException::User,msg,_FILEINFO_);
    }
  }

  // Make sure number of bands and projection parameters match for all cubes
  for (unsigned int i=0; i<imageList.size(); i++) {
    Cube cube1;
    cube1.Open(imageList[i]);
    g_maxBand = cube1.Bands();

    for (unsigned int j=(i+1); j<imageList.size(); j++) {
      Cube cube2;
      cube2.Open(imageList[j]);

      // Make sure number of bands match
      if (g_maxBand != cube2.Bands()) {
        string msg = "Number of bands do not match between cubes [" +
                     imageList[i] + "] and [" + imageList[j] + "]";
        throw iException::Message(iException::User,msg,_FILEINFO_);
      }

      //Create projection from each cube
      Projection *proj1 = cube1.Projection();
      Projection *proj2 = cube2.Projection();

      // Test to make sure projection parameters match
      if (*proj1 != *proj2) {
        string msg = "Mapping groups do not match between cubes [" +
                     imageList[i] + "] and [" + imageList[j] + "]";
        throw iException::Message(iException::User,msg,_FILEINFO_);
      }
    }
  }

  // Read hold list if one was entered
  std::vector<int> hold;
  if (ui.WasEntered("HOLD")) {
    FileList holdList;
    holdList.Read(ui.GetFilename("HOLD"));

    // Make sure each file in the holdlist matches a file in the fromlist
    for (int i=0; i<(int)holdList.size(); i++) {
      bool matched = false;
      for (int j=0; j<(int)imageList.size(); j++) {
        if (holdList[i] == imageList[j]) {
          matched = true;
          hold.push_back(j);
          break;
        }
      }
      if (!matched) {
        std::string msg = "The hold list file [" + holdList[i] +
                     "] does not match a file in the from list";
        throw iException::Message(iException::User,msg,_FILEINFO_);
      }
    }
  }

  // Read to list if one was entered
  FileList outList;
  if (ui.WasEntered("TOLIST")) {
    outList.Read(ui.GetFilename("TOLIST"));

    // Make sure each file in the tolist matches a file in the fromlist
    if (outList.size() != imageList.size()) {
      std::string msg = "Each input file in the FROM LIST must have a ";
      msg += "corresponding output file in the TO LIST.";
      throw iException::Message(iException::User,msg,_FILEINFO_);
    }

    // Make sure that all output files do not have the same names as their
    // corresponding input files
    for (unsigned i = 0; i < outList.size(); i++) {
      if (outList[i].compare(imageList[i]) == 0) {
        std::string msg = "The to list file [" + outList[i] +
                     "] has the same name as its corresponding from list file.";
        throw iException::Message(iException::User,msg,_FILEINFO_);
      }
    }
  }
  
  // Test to ensure sampling percent in bound
  double sampPercent = ui.GetDouble("PERCENT"); 
  if (sampPercent <= 0.0 || sampPercent > 100.0) {
    string msg = "The sampling percent must be a decimal (0.0, 100.0]";
    throw iException::Message(iException::User,msg,_FILEINFO_);
  }

  int mincnt = ui.GetInteger("MINCOUNT");
  bool wtopt = ui.GetBoolean("WEIGHT");
  if (processOpt != "APPLY") {
    // Loop through all the input cubes, calculating statistics for each cube to use later   
    iString maxCubeStr ((int)imageList.size());
    for (int band=1; band<=g_maxBand; band++) {
      std::vector<Statistics> statsList;
      for (int img=0; img<(int)imageList.size(); img++) {
	Process p;
	const CubeAttributeInput att;
	const std::string inp = imageList[img];
	Cube *icube = p.SetInputCube(inp, att);
	
	// Add a Statistics object to the list for every band of every input cube
	g_imageIndex = img;
	Statistics stats = GatherStatistics(*icube, band, sampPercent, maxCubeStr);
	statsList.push_back(stats);
	p.EndProcess();
      }
  
      // Create a separate OverlapNormalization object for every band
      OverlapNormalization *oNorm = new OverlapNormalization (statsList);
      for (int h=0; h<(int)hold.size(); h++) oNorm->AddHold(hold[h]);
      g_oNormList.push_back(oNorm);
    }

    // A list for keeping track of which input cubes are known to overlap another
    std::vector<bool> doesOverlapList;
    for (unsigned int i=0; i<imageList.size(); i++) doesOverlapList.push_back(false);

    // Find overlapping areas and add them to the set of known overlaps for each
    // band shared amongst cubes
    for (unsigned int i=0; i<imageList.size(); i++){
      Cube cube1;
      cube1.Open(imageList[i]);
  
      for (unsigned int j=(i+1); j<imageList.size(); j++) {
	Cube cube2;
	cube2.Open(imageList[j]);
	iString cubeStr1 ((int)(i+1));
	iString cubeStr2 ((int)(j+1));
	string statMsg = "Gathering Overlap Statisitcs for Cube " +
	  cubeStr1 + " vs " + cubeStr2 + " of " + maxCubeStr;
  
	// Get overlap statistics for cubes
	OverlapStatistics oStats(cube1, cube2, statMsg, sampPercent);
  
	// Only push the stats onto the oList vector if there is an overlap in at
	// least one of the bands
	if (oStats.HasOverlap()) {        
	  oStats.SetMincount(mincnt);
	  g_overlapList.push_back(oStats);
	  for (int band=1; band<=g_maxBand; band++) {
	    // Fill wt vector with 1's if the overlaps are not to be weighted, or
	    // fill the vector with the number of valid pixels in each overlap          
	    int weight = 1;
	    if (wtopt) weight = oStats.GetMStats(band).ValidPixels();
  
	    // Make sure overlap has at least MINCOUNT pixels and add          
	    if (oStats.GetMStats(band).ValidPixels() >= mincnt) {
	      g_oNormList[band-1]->AddOverlap(oStats.GetMStats(band).X(), i,
			       oStats.GetMStats(band).Y(), j, weight);
	      doesOverlapList[i] = true;
	      doesOverlapList[j] = true;
	    }
	  }
	}
      }
    }
  
    // Print an error if one or more of the images does not overlap another
    {
      std::string badFiles = "";
      for (unsigned int img=0; img<imageList.size(); img++) {
	// Print the name of each input cube without an overlap
	if (!doesOverlapList[img]) {
	   badFiles += "[" + imageList[img] + "] ";
	}
      }
      if (badFiles != "") {
	std::string msg = "File(s) " + badFiles;
	msg += " do(es) not overlap any other input images with enough valid pixels";
	throw iException::Message(iException::User,msg,_FILEINFO_);
      }
    }
  
    // Determine whether to calculate gains or offsets
    std::string adjust = ui.GetString("ADJUST");
    OverlapNormalization::SolutionType sType = OverlapNormalization::Both;  
    if (adjust == "CONTRAST")   sType = OverlapNormalization::Gains;
    if (adjust == "BRIGHTNESS") sType = OverlapNormalization::Offsets;
  
    // Loop through each band making all necessary calculations
    for (int band=0; band<g_maxBand; band++) {
      g_oNormList[band]->Solve(sType);
    }
  }

  // Print gathered statistics to the gui and the print file
  int validCnt = 0;
  int invalidCnt = 0;
  if (processOpt != "APPLY") {
    PvlGroup results("Results");

    // Compute the number valid and invalid overlaps
    for (unsigned int o=0; o<g_overlapList.size(); o++) {
      for (int band=1; band<=g_maxBand; band++) {
	if (g_overlapList[o].IsValid(band)) validCnt++;
	else invalidCnt++;
      }
    }

    results += PvlKeyword("TotalOverlaps", validCnt+invalidCnt);
    results += PvlKeyword("ValidOverlaps", validCnt);
    results += PvlKeyword("InvalidOverlaps", invalidCnt);
    std::string weightStr = "false";
    if (wtopt) weightStr = "true";
    results += PvlKeyword("Weighted", weightStr);
    results += PvlKeyword("MinCount", mincnt);

    // Name and band modifiers for each image
    for (unsigned int img=0; img<imageList.size(); img++) {
      results += PvlKeyword("FileName", imageList[img]);
  
      // Band by band statistics
      for (int band=1; band<=g_maxBand; band++) {
	iString mult (g_oNormList[band-1]->Gain(img));
	iString base (g_oNormList[band-1]->Offset(img));        
	iString avg (g_oNormList[band-1]->Average(img));
	iString bandNum (band);
	std::string bandStr = "Band" + bandNum;
	PvlKeyword bandStats(bandStr);
	bandStats += mult;
	bandStats += base;
	bandStats += avg;
	results += bandStats;
      }
    }

    // Write the results to the log
    Application::Log(results);
  }

  // Setup the output text file if the user requested one
  if (ui.WasEntered("OUTSTATS")) {
    PvlObject equ("EqualizationInformation");
    PvlGroup gen("General");
    gen += PvlKeyword("TotalOverlaps", validCnt+invalidCnt);
    gen += PvlKeyword("ValidOverlaps", validCnt);
    gen += PvlKeyword("InvalidOverlaps", invalidCnt);
    std::string weightStr = "false";
    if (wtopt) weightStr = "true";
    gen += PvlKeyword("Weighted", weightStr);
    gen += PvlKeyword("MinCount", mincnt);
    equ.AddGroup(gen);
    for (unsigned int img=0; img<imageList.size(); img++) {
      // Format and name information
      PvlGroup norm("Normalization");
      norm.AddComment("Formula: newDN = (oldDN - AVERAGE) * GAIN + AVERAGE + OFFSET");
      norm.AddComment("BandN = (GAIN, OFFSET, AVERAGE)");
      norm += PvlKeyword("FileName", imageList[img]);
      
      // Band by band statistics
      for (int band=1; band<=g_maxBand; band++) {
        iString mult (g_oNormList[band-1]->Gain(img));
        iString base (g_oNormList[band-1]->Offset(img));        
        iString avg (g_oNormList[band-1]->Average(img));
        iString bandNum (band);
        std::string bandStr = "Band" + bandNum;
        PvlKeyword bandStats(bandStr);
        bandStats += mult;
        bandStats += base;
        bandStats += avg;
        norm += bandStats;
      }
      equ.AddGroup(norm);
    }

    // Write the equalization and overlap statistics to the file
    std::string out = Filename(ui.GetFilename("OUTSTATS")).Expanded();
    std::ofstream os;
    os.open(out.c_str(),std::ios::app);    
    Pvl p;
    p.SetTerminator("");
    p.AddObject(equ);
    os << p << std::endl;
    for (unsigned int i=0; i<g_overlapList.size(); i++) {
      os << g_overlapList[i];
      if (i != g_overlapList.size()-1) os << std::endl;
    }
    os << "End";
  }

  // Check for errors with the input statistics
  if (processOpt == "APPLY") {
    Pvl inStats (ui.GetFilename("INSTATS"));
    PvlObject &equalInfo = inStats.FindObject("EqualizationInformation");

    // Make sure each file in the instats matches a file in the fromlist
    if (imageList.size() > (unsigned)equalInfo.Groups()-1) {
      std::string msg = "Each input file in the FROM LIST must have a ";
      msg += "corresponding input file in the INPUT STATISTICS.";
      throw iException::Message(iException::User,msg,_FILEINFO_);
    }

    // Check that each file in the FROM LIST is present in the INPUT STATISTICS
    for (unsigned i = 0; i < imageList.size(); i++) {
      std::string fromFile = imageList[i];
      bool foundFile = false;
      for (int j = 1; j < equalInfo.Groups(); j++) {
	PvlGroup &normalization = equalInfo.Group(j);
	std::string normFile  = normalization["Filename"][0];
	if (fromFile == normFile) {

	  // Store the index in INPUT STATISTICS file corresponding to the
	  // current FROM LIST file
	  normIndices.push_back(j);
	  foundFile = true;
	}
      }
      if (!foundFile) {
	std::string msg = "The from list file [" + fromFile +
		 "] does not have any corresponding file in the stats list.";
	throw iException::Message(iException::User,msg,_FILEINFO_);
      }
    }
  }

  // Apply the correction to the images if the user wants this done
  if (processOpt != "CALCULATE") {
    iString maxCubeStr ((int)imageList.size());
    for (int img=0; img<(int)imageList.size(); img++) {
      // Set up for progress bar
      ProcessByLine p;
      iString curCubeStr (img+1);
      p.Progress()->SetText("Equalizing Cube " + curCubeStr + " of " + maxCubeStr);

      // Open input cube
      CubeAttributeInput att;
      const std::string inp = imageList[img];
      Cube *icube = p.SetInputCube(inp, att);

      // Establish the output file depending upon whether or not a to list
      // was entered
      std::string out;
      if (ui.WasEntered("TOLIST")) {
	out = outList[img];
      }
      else {
	Filename file = imageList[img];
	out = file.Path() + "/" + file.Basename() + ".equ." + file.Extension();
      }

      // Allocate output cube
      CubeAttributeOutput outAtt;
      p.SetOutputCube(out,outAtt,icube->Samples(),icube->Lines(),icube->Bands());

      // Apply gain/offset to the image
      g_imageIndex = img;
      if (processOpt == "APPLY") {

	// Apply correction based on pre-determined statistics information
	Pvl inStats (ui.GetFilename("INSTATS"));
	PvlObject &equalInfo = inStats.FindObject("EqualizationInformation");
	PvlGroup &normalization = equalInfo.Group(normIndices[g_imageIndex]);
	gains.clear();
	offsets.clear();
	avgs.clear();

	// Get and store the modifiers for each band
	for (int band = 1; band < normalization.Keywords(); band++) {
	  gains.push_back(normalization[band][0]);
	  offsets.push_back(normalization[band][1]);
	  avgs.push_back(normalization[band][2]);
	}
	p.StartProcess(ApplyViaFile); 
      }
      else {

	// Apply correction based on the statistics gathered in this run
	p.StartProcess(ApplyViaObject);
      }
      p.EndProcess();
    }
  }
  
  // Clean-up for batch list runs
  for (unsigned int o=0; o<g_oNormList.size(); o++) delete g_oNormList[o];
  g_oNormList.clear();
  g_overlapList.clear();
  normIndices.clear();
  gains.clear();
  offsets.clear();
  avgs.clear();
}
Beispiel #6
0
void IsisMain() {
  // Open the input cube
  Process p;
  UserInterface &ui = Application::GetUserInterface();
  CubeAttributeInput cai;
  Cube *icube = p.SetInputCube(ui.GetFilename("FROM"), cai, ReadWrite);

  // Make sure at least one CK & SPK quality was selected
  if (!ui.GetBoolean("CKPREDICTED") && !ui.GetBoolean("CKRECON") && !ui.GetBoolean("CKSMITHED") && !ui.GetBoolean("CKNADIR")) {
    string msg = "At least one CK quality must be selected";
    throw iException::Message(iException::User,msg,_FILEINFO_);
  }
  if (!ui.GetBoolean("SPKPREDICTED") && !ui.GetBoolean("SPKRECON") && !ui.GetBoolean("SPKSMITHED")) {
    string msg = "At least one SPK quality must be selected";
    throw iException::Message(iException::User,msg,_FILEINFO_);
  }

  // Make sure it is not projected
  Projection *proj = NULL;
  try {
    proj = icube->Projection();
  } catch (iException &e) {
    proj = NULL;
    e.Clear();
  }

  if (proj != NULL) {
    string msg = "Can not initialize SPICE for a map projected cube";
    throw iException::Message(iException::User,msg,_FILEINFO_);
  }

  Pvl lab = *icube->Label();

  // if cube has existing polygon delete it
  if (icube->Label()->HasObject("Polygon")) {
    icube->Label()->DeleteObject("Polygon");
  }

  // Set up for getting the mission name
  // Get the directory where the system missions translation table is.
  string transFile = p.MissionData("base", "translations/MissionName2DataDir.trn");

  // Get the mission translation manager ready
  PvlTranslationManager missionXlater (lab, transFile);

  // Get the mission name so we can search the correct DB's for kernels
  string mission = missionXlater.Translate ("MissionName");

  // Get system base kernels
  unsigned int allowed = 0;
  unsigned int allowedCK = 0;
  unsigned int allowedSPK = 0;
  if (ui.GetBoolean("CKPREDICTED"))  allowedCK |= spiceInit::kernelTypeEnum("PREDICTED");
  if (ui.GetBoolean("CKRECON"))      allowedCK |= spiceInit::kernelTypeEnum("RECONSTRUCTED");
  if (ui.GetBoolean("CKSMITHED"))    allowedCK |= spiceInit::kernelTypeEnum("SMITHED");
  if (ui.GetBoolean("CKNADIR"))      allowedCK |= spiceInit::kernelTypeEnum("NADIR");
  if (ui.GetBoolean("SPKPREDICTED")) allowedSPK |= spiceInit::kernelTypeEnum("PREDICTED");
  if (ui.GetBoolean("SPKRECON"))     allowedSPK |= spiceInit::kernelTypeEnum("RECONSTRUCTED");
  if (ui.GetBoolean("SPKSMITHED"))   allowedSPK |= spiceInit::kernelTypeEnum("SMITHED");
  KernelDb baseKernels (allowed);
  KernelDb ckKernels (allowedCK);
  KernelDb spkKernels (allowedSPK);

  baseKernels.LoadSystemDb(mission);
  ckKernels.LoadSystemDb(mission);
  spkKernels.LoadSystemDb(mission);

  Kernel lk, pck, targetSpk, fk, ik, sclk, spk, iak, dem, exk;
  std::priority_queue< Kernel > ck;
  lk        = baseKernels.LeapSecond(lab);
  pck       = baseKernels.TargetAttitudeShape(lab);
  targetSpk = baseKernels.TargetPosition(lab);
  ik        = baseKernels.Instrument(lab);
  sclk      = baseKernels.SpacecraftClock(lab);
  iak       = baseKernels.InstrumentAddendum(lab);
  fk        = ckKernels.Frame(lab);
  ck        = ckKernels.SpacecraftPointing(lab);
  spk       = spkKernels.SpacecraftPosition(lab);

  if (ui.GetBoolean("CKNADIR")) {
    // Only add nadir if no spacecraft pointing found
    std::vector<std::string> kernels;
    kernels.push_back("Nadir");
    ck.push(Kernel((spiceInit::kernelTypes)0, kernels));
  }

  // Get user defined kernels and override ones already found
  GetUserEnteredKernel("LS", lk);
  GetUserEnteredKernel("PCK", pck);
  GetUserEnteredKernel("TSPK", targetSpk);
  GetUserEnteredKernel("FK", fk);
  GetUserEnteredKernel("IK", ik);
  GetUserEnteredKernel("SCLK", sclk);
  GetUserEnteredKernel("SPK", spk);
  GetUserEnteredKernel("IAK", iak);
  GetUserEnteredKernel("EXTRA", exk);

  // Get shape kernel
  if (ui.GetString ("SHAPE") == "USER") {
    GetUserEnteredKernel("MODEL", dem);
  } else if (ui.GetString("SHAPE") == "SYSTEM") {
    dem = baseKernels.Dem(lab);
  }

  bool kernelSuccess = false;

  if (ck.size() == 0 && !ui.WasEntered("CK")) {
    throw iException::Message(iException::Camera, 
                              "No Camera Kernel found for the image ["+ui.GetFilename("FROM")
                              +"]", 
                              _FILEINFO_);
  }
  else if(ui.WasEntered("CK")) {
    // ck needs to be array size 1 and empty kernel objects
    while(ck.size()) ck.pop();
    ck.push(Kernel());
  }

  while(ck.size() != 0 && !kernelSuccess) {
    Kernel realCkKernel = ck.top();
    ck.pop();

    if (ui.WasEntered("CK")) {
      ui.GetAsString("CK", realCkKernel.kernels);
    }

    // Merge SpacecraftPointing and Frame into ck
    for (int i = 0; i < fk.size(); i++) {
      realCkKernel.push_back(fk[i]);
    }

    kernelSuccess = TryKernels(icube, p, lk, pck, targetSpk,
                   realCkKernel, fk, ik, sclk, spk, iak, dem, exk);
  }

  if(!kernelSuccess) {
    throw iException::Message(iException::Camera, 
                              "Unable to initialize camera model", 
                              _FILEINFO_);
  }

  p.EndProcess();
}
Beispiel #7
0
void IsisMain() {
  Process p;

  // Get the list of names of input CCD cubes to stitch together
  FileList flist;
  UserInterface &ui = Application::GetUserInterface();
  flist.Read(ui.GetFilename("FROMLIST"));
  if (flist.size() < 1) {
    string msg = "The list file[" + ui.GetFilename("FROMLIST") +
    " does not contain any filenames";
    throw iException::Message(iException::User,msg,_FILEINFO_);
  }

  string projection("Equirectangular");
  if(ui.WasEntered("MAP")) {
      Pvl mapfile(ui.GetFilename("MAP"));
      projection = (string) mapfile.FindGroup("Mapping")["ProjectionName"];
  }

  if(ui.WasEntered("PROJECTION")) {
      projection = ui.GetString("PROJECTION");
  }

  // Gather other user inputs to projection
  string lattype = ui.GetString("LATTYPE");
  string londir  = ui.GetString("LONDIR");
  string londom  = ui.GetString("LONDOM");
  int digits = ui.GetInteger("PRECISION");

  // Fix them for mapping group
  lattype = (lattype == "PLANETOCENTRIC") ? "Planetocentric" : "Planetographic";
  londir = (londir == "POSITIVEEAST") ? "PositiveEast" : "PositiveWest";

  Progress prog;
  prog.SetMaximumSteps(flist.size());
  prog.CheckStatus();

  Statistics scaleStat;
  Statistics longitudeStat;
  Statistics latitudeStat;
  Statistics equiRadStat;
  Statistics poleRadStat;
  PvlObject fileset("FileSet");

  // Save major equitorial and polar radii for last occuring
  double eqRad; 
  double eq2Rad; 
  double poleRad;

  string target("Unknown");
  for (unsigned int i = 0 ; i < flist.size() ; i++) {
    // Set the input image, get the camera model, and a basic mapping
    // group
    Cube cube;
    cube.Open(flist[i]);

    int lines = cube.Lines();
    int samples = cube.Samples();


    PvlObject fmap("File");
    fmap += PvlKeyword("Name",flist[i]);
    fmap += PvlKeyword("Lines", lines);
    fmap += PvlKeyword("Samples", samples);

    Camera *cam = cube.Camera();
    Pvl mapping;
    cam->BasicMapping(mapping);
    PvlGroup &mapgrp = mapping.FindGroup("Mapping");
    mapgrp.AddKeyword(PvlKeyword("ProjectionName",projection),Pvl::Replace);    
    mapgrp.AddKeyword(PvlKeyword("LatitudeType",lattype),Pvl::Replace);    
    mapgrp.AddKeyword(PvlKeyword("LongitudeDirection",londir),Pvl::Replace);    
    mapgrp.AddKeyword(PvlKeyword("LongitudeDomain",londom),Pvl::Replace);    

    // Get the radii
    double radii[3];
    cam->Radii(radii);

    eqRad   = radii[0] * 1000.0;
    eq2Rad  = radii[1] * 1000.0;
    poleRad = radii[2] * 1000.0;

    target = cam->Target();
    equiRadStat.AddData(&eqRad, 1);
    poleRadStat.AddData(&poleRad, 1);

    // Get resolution
    double lowres = cam->LowestImageResolution();
    double hires = cam->HighestImageResolution();
    scaleStat.AddData(&lowres, 1);
    scaleStat.AddData(&hires, 1);

    double pixres = (lowres+hires)/2.0;
    double scale = Scale(pixres, poleRad, eqRad);
    mapgrp.AddKeyword(PvlKeyword("PixelResolution",pixres),Pvl::Replace);
    mapgrp.AddKeyword(PvlKeyword("Scale",scale,"pixels/degree"),Pvl::Replace);
    mapgrp += PvlKeyword("MinPixelResolution",lowres,"meters");
    mapgrp += PvlKeyword("MaxPixelResolution",hires,"meters");

    // Get the universal ground range
    double minlat,maxlat,minlon,maxlon;
    cam->GroundRange(minlat,maxlat,minlon,maxlon,mapping);
    mapgrp.AddKeyword(PvlKeyword("MinimumLatitude",minlat),Pvl::Replace);
    mapgrp.AddKeyword(PvlKeyword("MaximumLatitude",maxlat),Pvl::Replace);
    mapgrp.AddKeyword(PvlKeyword("MinimumLongitude",minlon),Pvl::Replace);
    mapgrp.AddKeyword(PvlKeyword("MaximumLongitude",maxlon),Pvl::Replace);

    fmap.AddGroup(mapgrp);
    fileset.AddObject(fmap);

    longitudeStat.AddData(&minlon, 1);
    longitudeStat.AddData(&maxlon, 1);
    latitudeStat.AddData(&minlat, 1);
    latitudeStat.AddData(&maxlat, 1);

    p.ClearInputCubes();
    prog.CheckStatus();
  }

//  Construct the output mapping group with statistics
  PvlGroup mapping("Mapping");
  double avgPixRes((scaleStat.Minimum()+scaleStat.Maximum())/2.0);
  double avgLat((latitudeStat.Minimum()+latitudeStat.Maximum())/2.0);
  double avgLon((longitudeStat.Minimum()+longitudeStat.Maximum())/2.0);
  double avgEqRad((equiRadStat.Minimum()+equiRadStat.Maximum())/2.0);
  double avgPoleRad((poleRadStat.Minimum()+poleRadStat.Maximum())/2.0);
  double scale  = Scale(avgPixRes, avgPoleRad, avgEqRad);

  mapping += PvlKeyword("ProjectionName",projection);
  mapping += PvlKeyword("TargetName", target);
  mapping += PvlKeyword("EquatorialRadius",eqRad,"meters");
  mapping += PvlKeyword("PolarRadius",poleRad,"meters");
  mapping += PvlKeyword("LatitudeType",lattype);
  mapping += PvlKeyword("LongitudeDirection",londir);
  mapping += PvlKeyword("LongitudeDomain",londom);
  mapping += PvlKeyword("PixelResolution", SetRound(avgPixRes, digits), "meters/pixel");
  mapping += PvlKeyword("Scale", SetRound(scale, digits), "pixels/degree");
  mapping += PvlKeyword("MinPixelResolution",scaleStat.Minimum(),"meters");
  mapping += PvlKeyword("MaxPixelResolution",scaleStat.Maximum(),"meters");
  mapping += PvlKeyword("CenterLongitude", SetRound(avgLon,digits));
  mapping += PvlKeyword("CenterLatitude",  SetRound(avgLat,digits));
  mapping += PvlKeyword("MinimumLatitude", MAX(SetFloor(latitudeStat.Minimum(),digits), -90.0));
  mapping += PvlKeyword("MaximumLatitude", MIN(SetCeil(latitudeStat.Maximum(),digits), 90.0));
  mapping += PvlKeyword("MinimumLongitude",MAX(SetFloor(longitudeStat.Minimum(),digits), -180.0));
  mapping += PvlKeyword("MaximumLongitude",MIN(SetCeil(longitudeStat.Maximum(),digits), 360.0));

  PvlKeyword clat("PreciseCenterLongitude", avgLon);
  clat.AddComment("Actual Parameters without precision applied");
  mapping += clat;
  mapping += PvlKeyword("PreciseCenterLatitude",  avgLat);
  mapping += PvlKeyword("PreciseMinimumLatitude", latitudeStat.Minimum());
  mapping += PvlKeyword("PreciseMaximumLatitude", latitudeStat.Maximum());
  mapping += PvlKeyword("PreciseMinimumLongitude",longitudeStat.Minimum());
  mapping += PvlKeyword("PreciseMaximumLongitude",longitudeStat.Maximum());

  
  Application::GuiLog(mapping);

  // Write the output file if requested
  if (ui.WasEntered("TO")) {
    Pvl temp;
    temp.AddGroup(mapping);
    temp.Write(ui.GetFilename("TO","map"));
  }

  if (ui.WasEntered("LOG")) {
    Pvl temp;
    temp.AddObject(fileset);
    temp.Write(ui.GetFilename("LOG","log"));
  }

  p.EndProcess();
}
Beispiel #8
0
void IsisMain() {
  Process p;
  Cube *icube = p.SetInputCube("FROM");

  // Setup the histogram
  UserInterface &ui = Application::GetUserInterface();
  Histogram hist(*icube,1,p.Progress());
  if (ui.WasEntered("MINIMUM")) {
    hist.SetValidRange(ui.GetDouble("MINIMUM"),ui.GetDouble("MAXIMUM"));
  }
  if (ui.WasEntered("NBINS")) {
    hist.SetBins(ui.GetInteger("NBINS"));
  }

  // Loop and accumulate histogram
  p.Progress()->SetText("Gathering Histogram");
  p.Progress()->SetMaximumSteps(icube->Lines());
  p.Progress()->CheckStatus();
  LineManager line(*icube);
  for (int i=1; i<=icube->Lines(); i++) {
    line.SetLine(i);
    icube->Read(line);
    hist.AddData(line.DoubleBuffer(),line.size());
    p.Progress()->CheckStatus();
  }

  if(!ui.IsInteractive() || ui.WasEntered("TO")) {
    // Write the results

    if (!ui.WasEntered("TO")) {
      string msg = "The [TO] parameter must be entered";
      throw iException::Message(iException::User,msg,_FILEINFO_);
    }
    string outfile = ui.GetFilename("TO");
    ofstream fout;
    fout.open (outfile.c_str());
   
    fout << "Cube:           " << ui.GetFilename("FROM") << endl;
    fout << "Band:           " << icube->Bands() << endl;
    fout << "Average:        " << hist.Average() << endl;
    fout << "Std Deviation:  " << hist.StandardDeviation() << endl;
    fout << "Variance:       " << hist.Variance() << endl;
    fout << "Median:         " << hist.Median() << endl;
    fout << "Mode:           " << hist.Mode() << endl;
    fout << "Skew:           " << hist.Skew() << endl;
    fout << "Minimum:        " << hist.Minimum() << endl;
    fout << "Maximum:        " << hist.Maximum() << endl;
    fout << endl;
    fout << "Total Pixels:    " << hist.TotalPixels() << endl;
    fout << "Valid Pixels:    " << hist.ValidPixels() << endl;
    fout << "Null Pixels:     " << hist.NullPixels() << endl;
    fout << "Lis Pixels:      " << hist.LisPixels() << endl;
    fout << "Lrs Pixels:      " << hist.LrsPixels() << endl;
    fout << "His Pixels:      " << hist.HisPixels() << endl;
    fout << "Hrs Pixels:      " << hist.HrsPixels() << endl;
   
    //  Write histogram in tabular format
    fout << endl;
    fout << endl;
    fout << "DN,Pixels,CumulativePixels,Percent,CumulativePercent" << endl;
   
    Isis::BigInt total = 0;
    double cumpct = 0.0;
   
    for (int i=0; i<hist.Bins(); i++) {
      if (hist.BinCount(i) > 0) {
        total += hist.BinCount(i);
        double pct = (double)hist.BinCount(i) / hist.ValidPixels() * 100.;
        cumpct += pct;
   
        fout << hist.BinMiddle(i) << ",";
        fout << hist.BinCount(i) << ",";
        fout << total << ",";
        fout << pct << ",";
        fout << cumpct << endl;
      }
    }
    fout.close();
  }
  // If we are in gui mode, create a histogram plot
  if (ui.IsInteractive()) {
    // Set the title for the dialog
    string title;
    if (ui.WasEntered("TITLE")) {
      title = ui.GetString("TITLE");
    }
    else {
      title = "Histogram Plot for " + Filename(ui.GetAsString("FROM")).Name();
    }

    // Create the QHistogram, set the title & load the Isis::Histogram into it

    Qisis::HistogramToolWindow *plot = new Qisis::HistogramToolWindow(title.c_str(), ui.TheGui());

    // Set the xaxis title if they entered one
    if (ui.WasEntered("XAXIS")) {
      string xaxis(ui.GetString("XAXIS"));
      plot->setAxisLabel(QwtPlot::xBottom,xaxis.c_str());
    }

    // Set the yLeft axis title if they entered one
    if (ui.WasEntered("Y1AXIS")) {
      string yaxis(ui.GetString("Y1AXIS"));
      plot->setAxisLabel(QwtPlot::yLeft,yaxis.c_str());
    }

    // Set the yRight axis title if they entered one
    if (ui.WasEntered("Y2AXIS")) {
      string y2axis(ui.GetString("Y2AXIS"));
      plot->setAxisLabel(QwtPlot::yRight,y2axis.c_str());
    }

    //Transfer data from histogram to the plotcurve
    std::vector<double> xarray,yarray,y2array;
    double cumpct = 0.0;
    for (int i=0; i<hist.Bins(); i++) {
      if (hist.BinCount(i) > 0) {
        xarray.push_back(hist.BinMiddle(i));
        yarray.push_back(hist.BinCount(i));

        double pct = (double)hist.BinCount(i) / hist.ValidPixels() * 100.;
        cumpct += pct;
        y2array.push_back(cumpct);
      }
    }

    Qisis::HistogramItem *histCurve = new Qisis::HistogramItem();
    histCurve->setColor(Qt::darkCyan);
    histCurve->setTitle("Frequency");

    Qisis::PlotToolCurve *cdfCurve = new Qisis::PlotToolCurve();
    cdfCurve->setStyle(QwtPlotCurve::Lines);
    cdfCurve->setTitle("Percentage");

    QPen *pen = new QPen(Qt::red);
    pen->setWidth(2);
    histCurve->setYAxis(QwtPlot::yLeft);
    cdfCurve->setYAxis(QwtPlot::yRight);
    cdfCurve->setPen(*pen);

    //These are all variables needed in the following for loop.
    //----------------------------------------------
    QwtArray<QwtDoubleInterval> intervals(xarray.size());
    QwtArray<double> values(yarray.size());
    double maxYValue = DBL_MIN;
    double minYValue = DBL_MAX;
    // --------------------------------------------- 

    for(unsigned int y = 0; y < yarray.size(); y++) {

      intervals[y] = QwtDoubleInterval(xarray[y], xarray[y] + hist.BinSize());
  
      values[y] = yarray[y];  
      if(values[y] > maxYValue) maxYValue = values[y]; 
      if(values[y] < minYValue) minYValue = values[y];
    }
    
    histCurve->setData(QwtIntervalData(intervals, values));
    cdfCurve->setData(&xarray[0],&y2array[0],xarray.size());

    plot->add(histCurve);
    plot->add(cdfCurve);
    plot->fillTable();

    plot->setScale(QwtPlot::yLeft,0,maxYValue);
    plot->setScale(QwtPlot::xBottom,hist.Minimum(),hist.Maximum());

    QLabel *label = new QLabel("  Average = " + QString::number(hist.Average()) + '\n' +
    "\n  Minimum = " + QString::number(hist.Minimum()) + '\n' +
    "\n  Maximum = " + QString::number(hist.Maximum()) + '\n' +
    "\n  Stand. Dev.= " + QString::number(hist.StandardDeviation()) + '\n' +
    "\n  Variance = " + QString::number(hist.Variance()) + '\n' +
    "\n  Median = " + QString::number(hist.Median()) + '\n' +
    "\n  Mode = " + QString::number(hist.Mode()) +'\n' +
    "\n  Skew = " + QString::number(hist.Skew()), plot);
    plot->getDockWidget()->setWidget(label);
 
    plot->showWindow();
  }
  p.EndProcess();
}
Beispiel #9
0
//Helper function to compute input range.
void ComputeInputRange () {
  Process p;
  Cube *latCub = p.SetInputCube("LATCUB");
  Cube *lonCub = p.SetInputCube("LONCUB");

  UserInterface &ui = Application::GetUserInterface();
  Pvl userMap;
  userMap.Read(ui.GetFilename("MAP"));
  PvlGroup &userGrp = userMap.FindGroup("Mapping",Pvl::Traverse);

  Statistics *latStats = latCub->Statistics();
  Statistics *lonStats = lonCub->Statistics();

  double minLat = latStats->Minimum();
  double maxLat = latStats->Maximum();

  int lonDomain = userGrp.HasKeyword("LongitudeDomain") ? (int)userGrp.FindKeyword("LongitudeDomain") : 360;
  double minLon = lonDomain == 360 ? Projection::To360Domain(lonStats->Minimum()) : Projection::To180Domain(lonStats->Minimum());
  double maxLon = lonDomain == 360 ? Projection::To360Domain(lonStats->Maximum()) : Projection::To180Domain(lonStats->Maximum());

  if(userGrp.HasKeyword("LatitudeType")) {
    bool isOcentric = ((std::string)userGrp.FindKeyword("LatitudeType")) == "Planetocentric";

    double equRadius;
    double polRadius;

    //If the user entered the equatorial and polar radii
    if(ui.WasEntered("EQURADIUS") && ui.WasEntered("POLRADIUS")) {
      equRadius = ui.GetDouble("EQURADIUS");
      polRadius = ui.GetDouble("POLRADIUS");
    }
    //Else read them from the pck
    else {
      Filename pckFile("$base/kernels/pck/pck?????.tpc");
      pckFile.HighestVersion();

      string pckFilename = pckFile.Expanded();

      furnsh_c(pckFilename.c_str());

      string target;

      //If user entered target 
      if(ui.WasEntered("TARGET")) {
        target = ui.GetString("TARGET");
      }
      //Else read the target name from the input cube
      else {
        Pvl fromFile;
        fromFile.Read(ui.GetFilename("FROM"));
        target = (string)fromFile.FindKeyword("TargetName", Pvl::Traverse);
      }

      SpiceInt code;
      SpiceBoolean found;

      bodn2c_c (target.c_str(), &code, &found);

      if (!found) {
        string msg = "Could not convert Target [" + target +
                     "] to NAIF code";
        throw Isis::iException::Message(Isis::iException::Io,msg,_FILEINFO_);
      }

      SpiceInt n;
      SpiceDouble radii[3];

      bodvar_c(code,"RADII",&n,radii);

      equRadius = radii[0] * 1000;
      polRadius = radii[2] * 1000;
    }

    if(isOcentric) {
      if(ui.GetString("LATTYPE") != "PLANETOCENTRIC") {
        minLat = Projection::ToPlanetocentric(minLat, (double)equRadius, (double)polRadius);
        maxLat = Projection::ToPlanetocentric(maxLat, (double)equRadius, (double)polRadius);
      }
    }
    else {
      if(ui.GetString("LATTYPE") == "PLANETOCENTRIC") {
        minLat = Projection::ToPlanetographic(minLat, (double)equRadius, (double)polRadius);
        maxLat = Projection::ToPlanetographic(maxLat, (double)equRadius, (double)polRadius);
      }
    }
  }

  if(userGrp.HasKeyword("LongitudeDirection")) {
    bool isPosEast = ((std::string)userGrp.FindKeyword("LongitudeDirection")) == "PositiveEast";

    if(isPosEast) {
      if(ui.GetString("LONDIR") != "POSITIVEEAST") {
        minLon = Projection::ToPositiveEast(minLon, lonDomain);
        maxLon = Projection::ToPositiveEast(maxLon, lonDomain);

        if(minLon > maxLon) {
          double temp = minLon;
          minLon = maxLon;
          maxLon = temp;
        }
      }
    }
    else {
      if(ui.GetString("LONDIR") == "POSITIVEEAST") {
        minLon = Projection::ToPositiveWest(minLon, lonDomain);
        maxLon = Projection::ToPositiveWest(maxLon, lonDomain);

        if(minLon > maxLon) {
          double temp = minLon;
          minLon = maxLon;
          maxLon = temp;
        }
      }
    }
  }

  // Set ground range parameters in UI
  ui.Clear("MINLAT");
  ui.PutDouble("MINLAT", minLat);
  ui.Clear("MAXLAT");
  ui.PutDouble("MAXLAT", maxLat);
  ui.Clear("MINLON");
  ui.PutDouble("MINLON", minLon);
  ui.Clear("MAXLON");
  ui.PutDouble("MAXLON", maxLon);

  p.EndProcess();

  // Set default ground range param to camera
  ui.Clear("DEFAULTRANGE");
  ui.PutAsString("DEFAULTRANGE","COMPUTE");
}
Beispiel #10
0
void IsisMain() {
  //Create a process to create the input cubes
  Process p;
  //Create the input cubes, matching sample/lines
  Cube *inCube = p.SetInputCube ("FROM");
  Cube *latCube = p.SetInputCube("LATCUB", SpatialMatch);
  Cube *lonCube = p.SetInputCube("LONCUB", SpatialMatch);

  //A 1x1 brick to read in the latitude and longitude DN values from
  //the specified cubes
  Brick latBrick(1,1,1, latCube->PixelType());
  Brick lonBrick(1,1,1, lonCube->PixelType());

  UserInterface &ui = Application::GetUserInterface();

  //Set the sample and line increments
  int sinc = (int)(inCube->Samples() * 0.10);
  if(ui.WasEntered("SINC")) {
    sinc = ui.GetInteger("SINC");
  }

  int linc = (int)(inCube->Lines() * 0.10);
  if(ui.WasEntered("LINC")) {
    linc = ui.GetInteger("LINC");
  }

  //Set the degree of the polynomial to use in our functions
  int degree = ui.GetInteger("DEGREE");

  //We are using a polynomial with two variables
  PolynomialBivariate sampFunct(degree); 
  PolynomialBivariate lineFunct(degree);

  //We will be solving the function using the least squares method
  LeastSquares sampSol(sampFunct);
  LeastSquares lineSol(lineFunct);

  //Setup the variables for solving the stereographic projection
  //x = cos(latitude) * sin(longitude - lon_center)
  //y = cos(lat_center) * sin(latitude) - sin(lat_center) * cos(latitude) * cos(longitude - lon_center)

  //Get the center lat and long from the input cubes
  double lat_center = latCube->Statistics()->Average() * PI/180.0;
  double lon_center = lonCube->Statistics()->Average() * PI/180.0;


  /**
   * Loop through lines and samples projecting the latitude and longitude at those
   * points to stereographic x and y and adding these points to the LeastSquares 
   * matrix. 
   */
  for(int i = 1; i <= inCube->Lines(); i+= linc) {
    for(int j = 1; j <= inCube->Samples(); j+= sinc) {
      latBrick.SetBasePosition(j, i, 1);
      latCube->Read(latBrick);
      if(IsSpecial(latBrick.at(0))) continue;
      double lat = latBrick.at(0) * PI/180.0;
      lonBrick.SetBasePosition(j, i, 1);
      lonCube->Read(lonBrick);
      if(IsSpecial(lonBrick.at(0))) continue;
      double lon = lonBrick.at(0) * PI/180.0;

      //Project lat and lon to x and y using a stereographic projection
      double k = 2/(1 + sin(lat_center) * sin(lat) + cos(lat_center)*cos(lat)*cos(lon - lon_center));
      double x = k * cos(lat) * sin(lon - lon_center);
      double y = k * (cos(lat_center) * sin(lat)) - (sin(lat_center) * cos(lat) * cos(lon - lon_center));

      //Add x and y to the least squares matrix
      vector<double> data;
      data.push_back(x);
      data.push_back(y);
      sampSol.AddKnown(data, j);
      lineSol.AddKnown(data, i);

      //If the sample increment goes past the last sample in the line, we want to
      //always read the last sample..
      if(j != inCube->Samples() && j + sinc > inCube->Samples()) {
        j = inCube->Samples() - sinc;
      }
    }
    //If the line increment goes past the last line in the cube, we want to
    //always read the last line..
    if(i != inCube->Lines() && i + linc > inCube->Lines()) {    
      i = inCube->Lines() - linc;
    }
  }

  //Solve the least squares functions using QR Decomposition
  sampSol.Solve(LeastSquares::QRD);
  lineSol.Solve(LeastSquares::QRD);

  //If the user wants to save the residuals to a file, create a file and write
  //the column titles to it.
  TextFile oFile;
  if(ui.WasEntered("RESIDUALS")) {
    oFile.Open(ui.GetFilename("RESIDUALS"), "overwrite");
    oFile.PutLine("Sample,\tLine,\tX,\tY,\tSample Error,\tLine Error\n");
  }

  //Gather the statistics for the residuals from the least squares solutions
  Statistics sampErr;
  Statistics lineErr;
  vector<double> sampResiduals = sampSol.Residuals();
  vector<double> lineResiduals = lineSol.Residuals();
  for(int i = 0; i < (int)sampResiduals.size(); i++) {
    sampErr.AddData(sampResiduals[i]);
    lineErr.AddData(lineResiduals[i]);
  }

  //If a residuals file was specified, write the previous data, and the errors to the file.
  if(ui.WasEntered("RESIDUALS")) {
    for(int i = 0; i < sampSol.Rows(); i++) {
      vector<double> data = sampSol.GetInput(i);
      iString tmp = "";
      tmp += iString(sampSol.GetExpected(i));
      tmp += ",\t";
      tmp += iString(lineSol.GetExpected(i));
      tmp += ",\t";
      tmp += iString(data[0]);
      tmp += ",\t";
      tmp += iString(data[1]);
      tmp += ",\t";
      tmp += iString(sampResiduals[i]);
      tmp += ",\t";
      tmp += iString(lineResiduals[i]);
      oFile.PutLine(tmp + "\n");
    }
  }
  oFile.Close();

  //Records the error to the log
  PvlGroup error( "Error" );
  error += PvlKeyword( "Degree", degree );
  error += PvlKeyword( "NumberOfPoints", (int)sampResiduals.size() );
  error += PvlKeyword( "SampleMinimumError", sampErr.Minimum() );
  error += PvlKeyword( "SampleAverageError", sampErr.Average() );
  error += PvlKeyword( "SampleMaximumError", sampErr.Maximum() );
  error += PvlKeyword( "SampleStdDeviationError", sampErr.StandardDeviation() );
  error += PvlKeyword( "LineMinimumError", lineErr.Minimum() );
  error += PvlKeyword( "LineAverageError", lineErr.Average() );
  error += PvlKeyword( "LineMaximumError", lineErr.Maximum() );
  error += PvlKeyword( "LineStdDeviationError", lineErr.StandardDeviation() );
  Application::Log( error );

  //Close the input cubes for cleanup
  p.EndProcess();

  //If we want to warp the image, then continue, otherwise return
  if(!ui.GetBoolean("NOWARP")) {
    //Creates the mapping group
    Pvl mapFile;
    mapFile.Read(ui.GetFilename("MAP"));
    PvlGroup &mapGrp = mapFile.FindGroup("Mapping",Pvl::Traverse);

    //Reopen the lat and long cubes
    latCube = new Cube();
    latCube->SetVirtualBands(ui.GetInputAttribute("LATCUB").Bands());
    latCube->Open(ui.GetFilename("LATCUB"));

    lonCube = new Cube();
    lonCube->SetVirtualBands(ui.GetInputAttribute("LONCUB").Bands());
    lonCube->Open(ui.GetFilename("LONCUB"));

    PvlKeyword targetName;

    //If the user entered the target name
    if(ui.WasEntered("TARGET")) {
      targetName = PvlKeyword("TargetName", ui.GetString("TARGET"));
    }
    //Else read the target name from the input cube
    else {
      Pvl fromFile;
      fromFile.Read(ui.GetFilename("FROM"));
      targetName = fromFile.FindKeyword("TargetName", Pvl::Traverse);
    }

    mapGrp.AddKeyword(targetName, Pvl::Replace);

    PvlKeyword equRadius;
    PvlKeyword polRadius;


    //If the user entered the equatorial and polar radii
    if(ui.WasEntered("EQURADIUS") && ui.WasEntered("POLRADIUS")) {
      equRadius = PvlKeyword("EquatorialRadius", ui.GetDouble("EQURADIUS"));
      polRadius = PvlKeyword("PolarRadius", ui.GetDouble("POLRADIUS"));
    }
    //Else read them from the pck
    else {
      Filename pckFile("$base/kernels/pck/pck?????.tpc");
      pckFile.HighestVersion();

      string pckFilename = pckFile.Expanded();

      furnsh_c(pckFilename.c_str());

      string target = targetName[0];
      SpiceInt code;
      SpiceBoolean found;

      bodn2c_c (target.c_str(), &code, &found);

      if (!found) {
        string msg = "Could not convert Target [" + target +
                     "] to NAIF code";
        throw Isis::iException::Message(Isis::iException::Io,msg,_FILEINFO_);
      }

      SpiceInt n;
      SpiceDouble radii[3];

      bodvar_c(code,"RADII",&n,radii);

      equRadius = PvlKeyword("EquatorialRadius", radii[0] * 1000);
      polRadius = PvlKeyword("PolarRadius", radii[2] * 1000);
    }

    mapGrp.AddKeyword(equRadius, Pvl::Replace);
    mapGrp.AddKeyword(polRadius, Pvl::Replace);


    //If the latitude type is not in the mapping group, copy it from the input
    if(!mapGrp.HasKeyword("LatitudeType")) {
      if(ui.GetString("LATTYPE") == "PLANETOCENTRIC") {
        mapGrp.AddKeyword(PvlKeyword("LatitudeType","Planetocentric"), Pvl::Replace);
      }
      else {
        mapGrp.AddKeyword(PvlKeyword("LatitudeType","Planetographic"), Pvl::Replace);
      }
    }

    //If the longitude direction is not in the mapping group, copy it from the input
    if(!mapGrp.HasKeyword("LongitudeDirection")) {
      if(ui.GetString("LONDIR") == "POSITIVEEAST") {
        mapGrp.AddKeyword(PvlKeyword("LongitudeDirection","PositiveEast"), Pvl::Replace);
      }
      else {
        mapGrp.AddKeyword(PvlKeyword("LongitudeDirection","PositiveWest"), Pvl::Replace);
      }
    }

    //If the longitude domain is not in the mapping group, assume it is 360
    if(!mapGrp.HasKeyword("LongitudeDomain")) {
      mapGrp.AddKeyword(PvlKeyword("LongitudeDomain","360"), Pvl::Replace);
    }

    //If the default range is to be computed, use the input lat/long cubes to determine the range
    if(ui.GetString("DEFAULTRANGE") == "COMPUTE") {
      //NOTE - When computing the min/max longitude this application does not account for the 
      //longitude seam if it exists. Since the min/max are calculated from the statistics of
      //the input longitude cube and then converted to the mapping group's domain they may be
      //invalid for cubes containing the longitude seam. 
    
      Statistics *latStats = latCube->Statistics();
      Statistics *lonStats = lonCube->Statistics();

      double minLat = latStats->Minimum();
      double maxLat = latStats->Maximum();

      bool isOcentric = ((std::string)mapGrp.FindKeyword("LatitudeType")) == "Planetocentric";
 
      if(isOcentric) {
        if(ui.GetString("LATTYPE") != "PLANETOCENTRIC") {
          minLat = Projection::ToPlanetocentric(minLat, (double)equRadius, (double)polRadius);
          maxLat = Projection::ToPlanetocentric(maxLat, (double)equRadius, (double)polRadius);
        }
      }
      else {
        if(ui.GetString("LATTYPE") == "PLANETOCENTRIC") {
          minLat = Projection::ToPlanetographic(minLat, (double)equRadius, (double)polRadius);
          maxLat = Projection::ToPlanetographic(maxLat, (double)equRadius, (double)polRadius);
        }
      }

      int lonDomain = (int)mapGrp.FindKeyword("LongitudeDomain");
      double minLon = lonDomain == 360 ? Projection::To360Domain(lonStats->Minimum()) : Projection::To180Domain(lonStats->Minimum());
      double maxLon = lonDomain == 360 ? Projection::To360Domain(lonStats->Maximum()) : Projection::To180Domain(lonStats->Maximum());

      bool isPosEast = ((std::string)mapGrp.FindKeyword("LongitudeDirection")) == "PositiveEast";
      
      if(isPosEast) {
        if(ui.GetString("LONDIR") != "POSITIVEEAST") {
          minLon = Projection::ToPositiveEast(minLon, lonDomain);
          maxLon = Projection::ToPositiveEast(maxLon, lonDomain);
        }
      }
      else {
        if(ui.GetString("LONDIR") == "POSITIVEEAST") {
          minLon = Projection::ToPositiveWest(minLon, lonDomain);
          maxLon = Projection::ToPositiveWest(maxLon, lonDomain);
        }
      }

      if(minLon > maxLon) {
        double temp = minLon;
        minLon = maxLon;
        maxLon = temp;
      }

      mapGrp.AddKeyword(PvlKeyword("MinimumLatitude", minLat),Pvl::Replace);
      mapGrp.AddKeyword(PvlKeyword("MaximumLatitude", maxLat),Pvl::Replace);
      mapGrp.AddKeyword(PvlKeyword("MinimumLongitude", minLon),Pvl::Replace);
      mapGrp.AddKeyword(PvlKeyword("MaximumLongitude", maxLon),Pvl::Replace);
    }

    //If the user decided to enter a ground range then override
    if (ui.WasEntered("MINLAT")) {
      mapGrp.AddKeyword(PvlKeyword("MinimumLatitude",
                                        ui.GetDouble("MINLAT")),Pvl::Replace);
    }
  
    if (ui.WasEntered("MAXLAT")) {
      mapGrp.AddKeyword(PvlKeyword("MaximumLatitude",
                                        ui.GetDouble("MAXLAT")),Pvl::Replace);
    }

    if (ui.WasEntered("MINLON")) {
      mapGrp.AddKeyword(PvlKeyword("MinimumLongitude",
                                        ui.GetDouble("MINLON")),Pvl::Replace);
    }
  
    if (ui.WasEntered("MAXLON")) {
      mapGrp.AddKeyword(PvlKeyword("MaximumLongitude",
                                        ui.GetDouble("MAXLON")),Pvl::Replace);
    }
  
    //If the pixel resolution is to be computed, compute the pixels/degree from the input
    if (ui.GetString("PIXRES") == "COMPUTE") {
      latBrick.SetBasePosition(1,1,1);
      latCube->Read(latBrick);

      lonBrick.SetBasePosition(1,1,1);
      lonCube->Read(lonBrick);

      //Read the lat and long at the upper left corner
      double a = latBrick.at(0) * PI/180.0;
      double c = lonBrick.at(0) * PI/180.0;
  
      latBrick.SetBasePosition(latCube->Samples(),latCube->Lines(),1);
      latCube->Read(latBrick);

      lonBrick.SetBasePosition(lonCube->Samples(),lonCube->Lines(),1);     
      lonCube->Read(lonBrick);

      //Read the lat and long at the lower right corner
      double b = latBrick.at(0) * PI/180.0;
      double d = lonBrick.at(0) * PI/180.0;

      //Determine the angle between the two points
      double angle = acos(cos(a) * cos(b) * cos(c - d) + sin(a) * sin(b));
      //double angle = acos((cos(a1) * cos(b1) * cos(b2)) + (cos(a1) * sin(b1) * cos(a2) * sin(b2)) + (sin(a1) * sin(a2)));
      angle *= 180/PI;

      //Determine the number of pixels between the two points
      double pixels = sqrt(pow(latCube->Samples() -1.0, 2.0) + pow(latCube->Lines() -1.0, 2.0));

      //Add the scale in pixels/degree to the mapping group
      mapGrp.AddKeyword(PvlKeyword("Scale",
                                        pixels/angle, "pixels/degree"),
                                        Pvl::Replace);
      if (mapGrp.HasKeyword("PixelResolution")) {
        mapGrp.DeleteKeyword("PixelResolution");
      }
    }


    // If the user decided to enter a resolution then override
    if (ui.GetString("PIXRES") == "MPP") {
      mapGrp.AddKeyword(PvlKeyword("PixelResolution",
                                        ui.GetDouble("RESOLUTION"), "meters/pixel"),
                                        Pvl::Replace);
      if (mapGrp.HasKeyword("Scale")) {
        mapGrp.DeleteKeyword("Scale");
      }
    }
    else if (ui.GetString("PIXRES") == "PPD") {
      mapGrp.AddKeyword(PvlKeyword("Scale",
                                        ui.GetDouble("RESOLUTION"), "pixels/degree"),
                                        Pvl::Replace);
      if (mapGrp.HasKeyword("PixelResolution")) {
        mapGrp.DeleteKeyword("PixelResolution");
      }
    }

    //Create a projection using the map file we created
    int samples,lines;
    Projection *outmap = ProjectionFactory::CreateForCube(mapFile,samples,lines,false);

    //Write the map file to the log
    Application::GuiLog(mapGrp);

    //Create a process rubber sheet
    ProcessRubberSheet r;

    //Set the input cube
    inCube = r.SetInputCube("FROM");

    double tolerance = ui.GetDouble("TOLERANCE") * outmap->Resolution();

    //Create a new transform object
    Transform *transform = new nocam2map (sampSol, lineSol, outmap,
                                          latCube, lonCube,
                                          ui.GetString("LATTYPE") == "PLANETOCENTRIC",
                                          ui.GetString("LONDIR") == "POSITIVEEAST",
                                          tolerance, ui.GetInteger("ITERATIONS"),
                                          inCube->Samples(), inCube->Lines(),
                                          samples, lines);
  
    //Allocate the output cube and add the mapping labels
    Cube *oCube = r.SetOutputCube ("TO", transform->OutputSamples(),
                                              transform->OutputLines(),
                                              inCube->Bands());
    oCube->PutGroup(mapGrp);

    //Determine which interpolation to use
    Interpolator *interp = NULL;
    if (ui.GetString("INTERP") == "NEARESTNEIGHBOR") {
      interp = new Interpolator(Interpolator::NearestNeighborType);
    }
    else if (ui.GetString("INTERP") == "BILINEAR") {
      interp = new Interpolator(Interpolator::BiLinearType);
    }
    else if (ui.GetString("INTERP") == "CUBICCONVOLUTION") {
      interp = new Interpolator(Interpolator::CubicConvolutionType);
    }
  
    //Warp the cube
    r.StartProcess(*transform, *interp);
    r.EndProcess();

    // add mapping to print.prt
    PvlGroup mapping = outmap->Mapping(); 
    Application::Log(mapping); 

    //Clean up
    delete latCube;
    delete lonCube;

    delete outmap;
    delete transform;
    delete interp;
  }
}
Beispiel #11
0
/** The ISIS smtk main application */
void IsisMain() {
  UserInterface &ui = Application::GetUserInterface();

  // Open the first cube.  It is the left hand image.
  Cube lhImage;
  CubeAttributeInput &attLeft = ui.GetInputAttribute("FROM");
  vector<QString> bandLeft = attLeft.bands();
  lhImage.setVirtualBands(bandLeft);
  lhImage.open(ui.GetFileName("FROM"),"r");

  // Open the second cube, it is geomertricallty altered.  We will be matching the
  // first to this one by attempting to compute a sample/line offsets
  Cube rhImage;
  CubeAttributeInput &attRight = ui.GetInputAttribute("MATCH");
  vector<QString> bandRight = attRight.bands();
  rhImage.setVirtualBands(bandRight);
  rhImage.open(ui.GetFileName("MATCH"),"r");

  // Ensure only single bands
  if (lhImage.bandCount() != 1 || rhImage.bandCount() != 1) {
    QString msg = "Input Cubes must have only one band!";
    throw IException(IException::User,msg,_FILEINFO_);
  }

  //  Both images must have a Camera and can also have a Projection.  We will
  //  only deal with a Camera, however as a projected, non-mosaicked image
  //  uses a Projection internal to the Camera object.
  Camera *lhCamera = NULL;
  Camera *rhCamera = NULL;
  try {
    lhCamera = lhImage.camera();
    rhCamera = rhImage.camera();
  }
  catch (IException &ie) {
    QString msg = "Both input images must have a camera";
    throw IException(ie, IException::User, msg, _FILEINFO_);
  }

  //  Since we are generating a DEM, we must turn off any existing
  //  DEM that may have been initialized with spiceinit.
  lhCamera->IgnoreElevationModel(true);
  rhCamera->IgnoreElevationModel(true);

  // Get serial number
  QString serialLeft = SerialNumber::Compose(lhImage, true);
  QString serialRight = SerialNumber::Compose(rhImage, true);

//  This still precludes band to band registrations.
  if (serialLeft == serialRight) {
    QString sLeft = FileName(lhImage.fileName()).name();
    QString sRight = FileName(rhImage.fileName()).name();
    if (sLeft == sRight) {
      QString msg = "Cube Serial Numbers must be unique - FROM=" + serialLeft +
                   ", MATCH=" + serialRight;
      throw IException(IException::User,msg,_FILEINFO_);
    }
    serialLeft = sLeft;
    serialRight = sRight;
  }

  Progress prog;
  prog.SetText("Finding Initial Seeds");

  int nl = lhImage.lineCount();
  int ns = lhImage.sampleCount();
  BigInt numAttemptedInitialPoints = 0;

  //  Declare Gruen matcher
  SmtkMatcher matcher(ui.GetFileName("REGDEF"), &lhImage, &rhImage);

  // Get line/sample linc/sinc parameters
  int space   = ui.GetInteger("SPACE");
  int linc (space), sinc(space);

  // Do we have a seed points from a control net file?
  bool useseed = ui.WasEntered("CNET");

  // Base points on an input cnet
  SmtkQStack gstack;
  double lastEigen(0.0);
  if (useseed) {
    ControlNet cnet(ui.GetFileName("CNET"));
    prog.SetMaximumSteps(cnet.GetNumPoints());
    prog.CheckStatus();

    gstack.reserve(cnet.GetNumPoints());

    for (int cpIndex = 0; cpIndex < cnet.GetNumPoints(); cpIndex ++) {
      ControlPoint *cp = cnet.GetPoint(cpIndex);

      if (!cp->IsIgnored()) {
        ControlMeasure *cmLeft(0), *cmRight(0);
        for(int cmIndex = 0; cmIndex < cp->GetNumMeasures(); cmIndex ++) {
          ControlMeasure *cm = cp->GetMeasure(cmIndex);
          if (!cm->IsIgnored()) {
            if (cm->GetCubeSerialNumber() == serialLeft)
              cmLeft = cp->GetMeasure(cmIndex);
            if (cm->GetCubeSerialNumber() == serialRight)
              cmRight = cp->GetMeasure(cmIndex);
          }
        }

        //  If we have both left and right images in the control point, save it
        if ( (cmLeft != 0) && (cmRight != 0) ) {
          Coordinate left = Coordinate(cmLeft->GetLine(), cmLeft->GetSample());
          Coordinate right = Coordinate(cmRight->GetLine(), cmRight->GetSample());
          SmtkPoint spnt = matcher.Create(left, right);

          // Insert the point (unregistered)
          if ( spnt.isValid() ) {
            int line = (int) cmLeft->GetLine();
            int samp = (int) cmLeft->GetSample();
            matcher.isValid(spnt);
            gstack.insert(qMakePair(line, samp), spnt);
            lastEigen = spnt.GoodnessOfFit();
          }
        }
      }

      prog.CheckStatus();
    }
  }
  else {
  // We want to create a grid of control points that is N rows by M columns.

    int rows = (lhImage.lineCount() + linc - 1)/linc;
    int cols = (lhImage.sampleCount() + sinc - 1)/sinc;

    prog.SetMaximumSteps(rows * cols);
    prog.CheckStatus();

    // First pass stack and eigen value statistics
    SmtkQStack fpass;
    fpass.reserve(rows * cols);
    Statistics temp_mev;

    // Loop through grid of points and get statistics to compute
    // initial set of points
    for (int line = linc / 2 + 1; line < nl; line += linc) {
      for (int samp = sinc / 2 + 1 ; samp < ns; samp += sinc) {
        numAttemptedInitialPoints ++;
        SmtkPoint spnt = matcher.Register(Coordinate(line,samp));
        if ( spnt.isValid() ) {
          matcher.isValid(spnt);
          fpass.insert(qMakePair(line, samp), spnt);
          temp_mev.AddData(spnt.GoodnessOfFit());
        }
        prog.CheckStatus();
      }
    }

    //  Now select a subset of fpass points as the seed points
    cout << "Number of Potential Seed Points: " << fpass.size() << "\n";
    cout << "Min / Max Eigenvalues Matched: " << temp_mev.Minimum() << ", "
         << temp_mev.Maximum() << "\n";

    // How many seed points are requested
    double nseed = ui.GetDouble("NSEED");
    int inseed;
    if (nseed >= 1.0) inseed = (int) nseed;
    else if (nseed > 0.0) inseed = (int) (nseed * (double) (fpass.size()));
    else inseed = (int) ((double) (fpass.size()) * 0.05);

    double seedsample = ui.GetDouble("SEEDSAMPLE");

    // Generate a new stack
    gstack.reserve(inseed);
    while ((gstack.size() < inseed) && (!fpass.isEmpty() )) {
      SmtkQStack::iterator bestm;
      if (seedsample <= 0.0) {
        bestm = matcher.FindSmallestEV(fpass);
      }
      else {
        bestm = matcher.FindExpDistEV(fpass, seedsample, temp_mev.Minimum(),
                                      temp_mev.Maximum());
      }

      //  Add point to stack
      if (bestm != fpass.end()) {
        Coordinate right = bestm.value().getRight();
        matcher.isValid(bestm.value());
        gstack.insert(bestm.key(), bestm.value());
        lastEigen = bestm.value().GoodnessOfFit();
        fpass.erase(bestm);
      }
    }

    // If a user wants to see the seed network, write it out here
    if (ui.WasEntered("OSEEDNET")) {
      WriteCnet(ui.GetFileName("OSEEDNET"), gstack,
                lhCamera->target()->name(), serialLeft, serialRight);
    }

  }

  ///////////////////////////////////////////////////////////////////////
  // All done with seed points.  Sanity check ensures we actually found
  // some.
  ///////////////////////////////////////////////////////////////////////
  if (gstack.size() <= 0) {
    QString msg = "No seed points found - may need to check Gruen parameters.";
    throw IException(IException::User, msg, _FILEINFO_);
  }

  //  Report seed point status
  if (!useseed) {
    cout << "Number of Seed Points used: " << gstack.size() << "\n";
    cout << "EV of last Seed Point:      " << lastEigen << "\n";
  }
  else {
    cout << "Number of Manual Seed Points:   " << gstack.size() << "\n";
  }

  // Use seed points (in stack) to grow
  SmtkQStack bmf;
  bmf.reserve(gstack.size());  // Probably need much more but for starters...

  BigInt numOrigPoints = gstack.size();
  BigInt passpix2 = 0;

  int subcbox = ui.GetInteger("SUBCBOX");
  int halfBox((subcbox-1)/2);
  while (!gstack.isEmpty()) {

    SmtkQStackIter cstack = matcher.FindSmallestEV(gstack);

    // Print number on stack
    if ((gstack.size() % 1000) == 0) {
      cout << "Number on Stack: " << gstack.size()
           << ". " << cstack.value().GoodnessOfFit() << "\n";
    }

    // Test to see if already determined
    SmtkQStackIter bmfPt = bmf.find(cstack.key());
    if (bmfPt == bmf.end()) {
      // Its not in the final stack, process it

      //  Retrieve the point
      SmtkPoint spnt = cstack.value();
      //  Register if its not already registered
      if (!spnt.isRegistered()) {
        spnt = matcher.Register(spnt, spnt.getAffine());
      }

      // Still must check for validity if the point was just registered,
      // otherwise should be good
      if ( spnt.isValid() ) {
        passpix2++;
        bmf.insert(cstack.key(), spnt);  // inserts (0,0) offset excluded below
        int line   = cstack.key().first;
        int sample = cstack.key().second;

        //  Determine match points
        double eigen(spnt.GoodnessOfFit());
        for (int sampBox = -halfBox ; sampBox <= halfBox ; sampBox++ ) {
          int csamp = sample + sampBox;
          for (int lineBox = -halfBox ; lineBox <= halfBox ; lineBox++) {
            int cline = line + lineBox;
            if ( !( (sampBox == 0) && (lineBox == 0)) ) {// Already added above
              SmtkQPair dupPair(cline, csamp);
              SmtkQStackIter temp = bmf.find(dupPair);
              SmtkPoint bmfpnt;
              if (temp != bmf.end()) {
                if (temp.value().GoodnessOfFit() > eigen) {
                  // Create cloned point with better fit
                  bmfpnt = matcher.Clone(spnt, Coordinate(cline,csamp));
                }
              }
              else {  // ISIS2 is BMF(SAMP,LINE,7) .EQ VALID_MAX4)
                // Clone new point for insert
                bmfpnt = matcher.Clone(spnt, Coordinate(cline,csamp));
              }

              //  Add if good point
              if (bmfpnt.isValid()) {
                bmf.insert(dupPair, bmfpnt);
              }
            }
          }
        }

        // Grow stack with spacing adding info to stack
        for (int i = -1 ; i <= 1 ; i ++) {  // Sample
          for (int j = -1 ; j <= 1 ; j ++) {  // Line
            // Don't re-add the original sample, line
            if ( !((i == 0) && (j == 0)) ) {
              //  Grow based upon spacing
              double ssamp = sample + (i * space);
              double sline = line   + (j * space);
              Coordinate pnt = Coordinate(sline, ssamp);
              SmtkPoint gpnt = matcher.Clone(spnt, pnt);

              if ( gpnt.isValid() ) {
                SmtkQPair growpt((int) sline, (int) ssamp);

                // double check we don't have a finalized result at this position
                SmtkQStackIter temp = bmf.find(growpt);
                if(temp == bmf.end()) {
                  gstack.insert(growpt, gpnt);
                }
              }
            }
          }
        }
      }
    }

    // Remove the current point from the grow stack (hole)
    gstack.erase(cstack);
  }

/////////////////////////////////////////////////////////////////////////
// All done with creating points.  Perform output options.
/////////////////////////////////////////////////////////////////////////

  // If a TO parameter was specified, create DEM with errors
  if (ui.WasEntered("TO")) {
    //  Create the output DEM
    cout << "\nCreating output DEM from " << bmf.size() << " points.\n";
    Process  p;
    Cube *icube = p.SetInputCube("FROM");
    Cube *ocube = p.SetOutputCube("TO", icube->sampleCount(),
                                  icube->lineCount(), 3);
    p.ClearInputCubes();

    int boxsize = ui.GetInteger("BOXSIZE");
    double plotdist = ui.GetDouble("PLOTDIST");

    TileManager dem(*ocube), eigen(*ocube), stErr(*ocube);
    dem.SetTile(1, 1);      //  DEM Data/elevation
    stErr.SetTile(1, 2);    //  Error in stereo computation
    eigen.SetTile(1, 3);    //  Eigenvalue of the solution

    int nBTiles(eigen.Tiles()/3);  // Total tiles / 3 bands

    prog.SetText("Creating DEM");
    prog.SetMaximumSteps(nBTiles);
    prog.CheckStatus();

    Statistics stAng;
    while ( !eigen.end() ) {   // Must use the last band for this!!
      PointPlot tm = for_each(bmf.begin(), bmf.end(), PointPlot(dem, plotdist));
      tm.FillPoints(*lhCamera, *rhCamera, boxsize, dem, stErr, eigen, &stAng);

      ocube->write(dem);
      ocube->write(stErr);
      ocube->write(eigen);

      dem.next();
      stErr.next();
      eigen.next();

      prog.CheckStatus();
    }

    //  Report Stereo separation angles
    PvlGroup stresultsPvl("StereoSeparationAngle");
    stresultsPvl += PvlKeyword("Minimum", toString(stAng.Minimum()), "deg");
    stresultsPvl += PvlKeyword("Average", toString(stAng.Average()), "deg");
    stresultsPvl += PvlKeyword("Maximum", toString(stAng.Maximum()), "deg");
    stresultsPvl += PvlKeyword("StandardDeviation", toString(stAng.StandardDeviation()), "deg");
    Application::Log(stresultsPvl);

    // Update the label with BandBin keywords
    PvlKeyword filter("FilterName", "Elevation", "meters");
    filter.addValue("ElevationError", "meters");
    filter.addValue("GoodnessOfFit", "unitless");
    PvlKeyword center("Center", "1.0");
    center.addValue("1.0");
    center.addValue("1.0");

    PvlGroup &bandbin = ocube->label()->findGroup("BandBin", PvlObject::Traverse);
    bandbin.addKeyword(filter, PvlContainer::Replace);
    bandbin.addKeyword(center, PvlContainer::Replace);
    center.setName("Width");
    bandbin.addKeyword(center, PvlContainer::Replace);


    p.EndProcess();
  }

  // If a cnet file was entered, write the ControlNet pvl to the file
  if (ui.WasEntered("ONET")) {
    WriteCnet(ui.GetFileName("ONET"), bmf, lhCamera->target()->name(), serialLeft,
              serialRight);
  }

  // Create output data
  PvlGroup totalPointsPvl("Totals");
  totalPointsPvl += PvlKeyword("AttemptedPoints", toString(numAttemptedInitialPoints));
  totalPointsPvl += PvlKeyword("InitialSuccesses", toString(numOrigPoints));
  totalPointsPvl += PvlKeyword("GrowSuccesses", toString(passpix2));
  totalPointsPvl += PvlKeyword("ResultingPoints", toString(bmf.size()));

  Application::Log(totalPointsPvl);

  Pvl arPvl = matcher.RegistrationStatistics();
  PvlGroup smtkresultsPvl("SmtkResults");
  smtkresultsPvl += PvlKeyword("SpiceOffImage", toString(matcher.OffImageErrorCount()));
  smtkresultsPvl += PvlKeyword("SpiceDistanceError", toString(matcher.SpiceErrorCount()));
  arPvl.addGroup(smtkresultsPvl);

  for(int i = 0; i < arPvl.groups(); i++) {
    Application::Log(arPvl.group(i));
  }

  // add the auto registration information to print.prt
  PvlGroup autoRegTemplate = matcher.RegTemplate();
  Application::Log(autoRegTemplate);

  // Don't need the cubes opened anymore
  lhImage.close();
  rhImage.close();
}