void InitializeFromSuffixArray(T_DNASequence &dnaSeq, DNALength saIndex[], int buildDebug=0) { useDebugData = buildDebug; InitializeBWTStringFromSuffixArray(dnaSeq, saIndex); InitializeDNACharacterCount(); // sequence, major, minor bin sizes. occ.Initialize(bwtSequence, 4096, 64, buildDebug); pos.InitializeFromSuffixArray(saIndex, dnaSeq.length); }