/**
* Return true if the two workspaces are compatible for this operation
* Virtual: will be overridden as needed.
* @param lhs :: left-hand workspace to check
* @param rhs :: right-hand workspace to check
* @return flag for the compatibility to the two workspaces
*/
bool BinaryOperation::checkCompatibility(
const API::MatrixWorkspace_const_sptr lhs,
const API::MatrixWorkspace_const_sptr rhs) const {
Unit_const_sptr lhs_unit;
Unit_const_sptr rhs_unit;
if (lhs->axes() && rhs->axes()) // If one of these is a WorkspaceSingleValue
// then we don't want to check units match
{
lhs_unit = lhs->getAxis(0)->unit();
rhs_unit = rhs->getAxis(0)->unit();
}
const std::string lhs_unitID = (lhs_unit ? lhs_unit->unitID() : "");
const std::string rhs_unitID = (rhs_unit ? rhs_unit->unitID() : "");
// Check the workspaces have the same units and distribution flag
if (lhs_unitID != rhs_unitID && lhs->blocksize() > 1 &&
rhs->blocksize() > 1) {
g_log.error("The two workspace are not compatible because they have "
"different units on the X axis.");
return false;
}
// Check the size compatibility
std::string checkSizeCompatibilityResult = checkSizeCompatibility(lhs, rhs);
if (!checkSizeCompatibilityResult.empty()) {
throw std::invalid_argument(checkSizeCompatibilityResult);
}
return true;
}
/**
* Return true if the two workspaces are compatible for this operation
* Virtual: will be overridden as needed.
* @param lhs :: left-hand workspace to check
* @param rhs :: right-hand workspace to check
* @return flag for the compatibility to the two workspaces
*/
bool BinaryOperation::checkCompatibility(const API::MatrixWorkspace_const_sptr lhs,const API::MatrixWorkspace_const_sptr rhs) const
{
Unit_const_sptr lhs_unit;
Unit_const_sptr rhs_unit;
if ( lhs->axes() && rhs->axes() ) // If one of these is a WorkspaceSingleValue then we don't want to check units match
{
lhs_unit = lhs->getAxis(0)->unit();
rhs_unit = rhs->getAxis(0)->unit();
}
const std::string lhs_unitID = ( lhs_unit ? lhs_unit->unitID() : "" );
const std::string rhs_unitID = ( rhs_unit ? rhs_unit->unitID() : "" );
// Check the workspaces have the same units and distribution flag
if ( lhs_unitID != rhs_unitID && lhs->blocksize() > 1 && rhs->blocksize() > 1 )
{
g_log.error("The two workspace are not compatible because they have different units on the X axis.");
return false;
}
// Check the size compatibility
if (!checkSizeCompatibility(lhs,rhs))
{
std::ostringstream ostr;
ostr<<"The sizes of the two workspaces " <<
"(" << lhs->getName() << ": " << lhs->getNumberHistograms() << " spectra, blocksize " << lhs->blocksize() << ")"
<< " and " <<
"(" << rhs->getName() << ": " << rhs->getNumberHistograms() << " spectra, blocksize " << rhs->blocksize() << ")"
<< " are not compatible for algorithm "<<this->name();
g_log.error() << ostr.str() << std::endl;
throw std::invalid_argument( ostr.str() );
}
return true;
}
/** Performs a simple check to see if the sizes of two workspaces are compatible
* for a binary operation
* In order to be size compatible then the larger workspace
* must divide be the size of the smaller workspace leaving no remainder
* @param lhs :: the first workspace to compare
* @param rhs :: the second workspace to compare
* @retval "" The two workspaces are size compatible
* @retval "<reason why not compatible>" The two workspaces are NOT size
* compatible
*/
std::string BinaryOperation::checkSizeCompatibility(
const API::MatrixWorkspace_const_sptr lhs,
const API::MatrixWorkspace_const_sptr rhs) const {
const size_t lhsSize = lhs->size();
const size_t rhsSize = rhs->size();
// A SingleValueWorkspace on the right matches anything
if (rhsSize == 1)
return "";
// The lhs must not be smaller than the rhs
if (lhsSize < rhsSize)
return "Left hand side smaller than right hand side.";
// Did checkRequirements() tell us that the X histogram size did not matter?
if (!m_matchXSize) {
// If so, only the vertical # needs to match
if (lhs->getNumberHistograms() == rhs->getNumberHistograms()) {
return "";
} else {
return "Number of histograms not identical.";
}
}
// Otherwise they must match both ways, or horizontally or vertically with the
// other rhs dimension=1
if (rhs->blocksize() == 1 &&
lhs->getNumberHistograms() == rhs->getNumberHistograms())
return "";
// Past this point, we require the X arrays to match. Note this only checks
// the first spectrum
if (!WorkspaceHelpers::matchingBins(*lhs, *rhs, true)) {
return "X arrays must match when performing this operation on a 2D "
"workspaces.";
}
const size_t rhsSpec = rhs->getNumberHistograms();
if (lhs->blocksize() == rhs->blocksize()) {
if (rhsSpec == 1 || lhs->getNumberHistograms() == rhsSpec) {
return "";
} else {
// can't be more specific as if this is reached both failed and only one
// or both are needed
return "Left and right sides should contain the same amount of spectra "
"or the right side should contian only one spectra.";
}
} else {
// blocksize check failed, but still check the number of spectra to see if
// that was wrong too
if (rhsSpec == 1 || lhs->getNumberHistograms() == rhsSpec) {
return "Number of y values not equal on left and right sides.";
} else {
// can't be more specific as if this is reached both failed and only one
// or both are needed
return "Number of y values not equal on left and right sides and the "
"right side contained neither only one spectra or the same amount "
"of spectra as the left.";
}
}
}
/** Calculates rebin parameters: the min and max bin boundaries and the
logarithmic step. The aim is to have approx.
the same number of bins as in the input workspace.
@param workspace :: The workspace being rebinned
@param min :: (return) The calculated frame starting point
@param max :: (return) The calculated frame ending point
@param step :: (return) The calculated bin width
*/
void DiffractionFocussing::calculateRebinParams(
const API::MatrixWorkspace_const_sptr &workspace, double &min, double &max,
double &step) {
min = std::numeric_limits<double>::max();
// for min and max we need to iterate over the data block and investigate each
// one
int64_t length = workspace->getNumberHistograms();
for (int64_t i = 0; i < length; i++) {
const MantidVec &xVec = workspace->readX(i);
const double &localMin = xVec[0];
const double &localMax = xVec[xVec.size() - 1];
if (localMin != std::numeric_limits<double>::infinity() &&
localMax != std::numeric_limits<double>::infinity()) {
if (localMin < min)
min = localMin;
if (localMax > max)
max = localMax;
}
}
if (min <= 0.)
min = 1e-6;
// step is easy
double n = static_cast<double>(workspace->blocksize());
step = (log(max) - log(min)) / n;
}
/** Do the initial copy of the data from the input to the output workspace for
* histogram workspaces.
* Takes out the bin width if necessary.
* @param inputWS The input workspace
* @param outputWS The output workspace
*/
void ConvertUnitsUsingDetectorTable::fillOutputHist(
const API::MatrixWorkspace_const_sptr inputWS,
const API::MatrixWorkspace_sptr outputWS) {
const int size = static_cast<int>(inputWS->blocksize());
// Loop over the histograms (detector spectra)
Progress prog(this, 0.0, 0.2, m_numberOfSpectra);
int64_t numberOfSpectra_i =
static_cast<int64_t>(m_numberOfSpectra); // cast to make openmp happy
PARALLEL_FOR2(inputWS, outputWS)
for (int64_t i = 0; i < numberOfSpectra_i; ++i) {
PARALLEL_START_INTERUPT_REGION
// Take the bin width dependency out of the Y & E data
if (m_distribution) {
for (int j = 0; j < size; ++j) {
const double width =
std::abs(inputWS->dataX(i)[j + 1] - inputWS->dataX(i)[j]);
outputWS->dataY(i)[j] = inputWS->dataY(i)[j] * width;
outputWS->dataE(i)[j] = inputWS->dataE(i)[j] * width;
}
} else {
// Just copy over
outputWS->dataY(i) = inputWS->readY(i);
outputWS->dataE(i) = inputWS->readE(i);
}
// Copy over the X data
outputWS->setX(i, inputWS->refX(i));
prog.report("Convert to " + m_outputUnit->unitID());
PARALLEL_END_INTERUPT_REGION
}
PARALLEL_CHECK_INTERUPT_REGION
}
/** Calculates rebin parameters: the min and max bin boundaries and the
logarithmic step. The aim is to have approx.
the same number of bins as in the input workspace.
@param workspace :: The workspace being rebinned
@param min :: (return) The calculated frame starting point
@param max :: (return) The calculated frame ending point
@param step :: (return) The calculated bin width
*/
void DiffractionFocussing::calculateRebinParams(
const API::MatrixWorkspace_const_sptr &workspace, double &min, double &max,
double &step) {
min = std::numeric_limits<double>::max();
// for min and max we need to iterate over the data block and investigate each
// one
int64_t length = workspace->getNumberHistograms();
for (int64_t i = 0; i < length; i++) {
auto &xVec = workspace->x(i);
const double &localMin = xVec.front();
const double &localMax = xVec.back();
if (std::isfinite(localMin) && std::isfinite(localMax)) {
min = std::min(min, localMin);
max = std::max(max, localMax);
}
}
if (min <= 0.)
min = 1e-6;
// step is easy
double n = static_cast<double>(workspace->blocksize());
step = (log(max) - log(min)) / n;
}
/**
* Creates the output workspace for this algorithm
* @param inputWorkspace A parent workspace to initialize from.
* @return A pointer to the output workspace.
*/
API::MatrixWorkspace_sptr Transpose::createOutputWorkspace(
API::MatrixWorkspace_const_sptr inputWorkspace) {
Mantid::API::Axis *yAxis = getVerticalAxis(inputWorkspace);
const size_t oldNhist = inputWorkspace->getNumberHistograms();
const auto &inX = inputWorkspace->x(0);
const size_t oldYlength = inputWorkspace->blocksize();
const size_t oldVerticalAxislength = yAxis->length();
// The input Y axis may be binned so the new X data should be too
size_t newNhist(oldYlength), newXsize(oldVerticalAxislength),
newYsize(oldNhist);
MatrixWorkspace_sptr outputWorkspace = inputWorkspace->cloneEmpty();
outputWorkspace->initialize(newNhist, newXsize, newYsize);
outputWorkspace->setTitle(inputWorkspace->getTitle());
outputWorkspace->setComment(inputWorkspace->getComment());
outputWorkspace->copyExperimentInfoFrom(inputWorkspace.get());
outputWorkspace->setYUnit(inputWorkspace->YUnit());
outputWorkspace->setYUnitLabel(inputWorkspace->YUnitLabel());
outputWorkspace->setDistribution(inputWorkspace->isDistribution());
// Create a new numeric axis for Y the same length as the old X array
// Values come from input X
API::NumericAxis *newYAxis(nullptr);
if (inputWorkspace->isHistogramData()) {
newYAxis = new API::BinEdgeAxis(inX.rawData());
} else {
newYAxis = new API::NumericAxis(inX.rawData());
}
newYAxis->unit() = inputWorkspace->getAxis(0)->unit();
outputWorkspace->getAxis(0)->unit() = inputWorkspace->getAxis(1)->unit();
outputWorkspace->replaceAxis(1, newYAxis);
setProperty("OutputWorkspace", outputWorkspace);
return outputWorkspace;
}
/**
* Creates the output workspace for this algorithm
* @param inputWorkspace A parent workspace to initialize from.
* @return A pointer to the output workspace.
*/
API::MatrixWorkspace_sptr Transpose::createOutputWorkspace(
API::MatrixWorkspace_const_sptr inputWorkspace) {
Mantid::API::Axis *yAxis = getVerticalAxis(inputWorkspace);
const size_t oldNhist = inputWorkspace->getNumberHistograms();
const MantidVec &inX = inputWorkspace->readX(0);
const size_t oldYlength = inputWorkspace->blocksize();
const size_t oldVerticalAxislength = yAxis->length();
// The input Y axis may be binned so the new X data should be too
size_t newNhist(oldYlength), newXsize(oldVerticalAxislength),
newYsize(oldNhist);
MatrixWorkspace_sptr outputWorkspace = WorkspaceFactory::Instance().create(
inputWorkspace, newNhist, newXsize, newYsize);
// Create a new numeric axis for Y the same length as the old X array
// Values come from input X
API::NumericAxis *newYAxis(nullptr);
if (inputWorkspace->isHistogramData()) {
newYAxis = new API::BinEdgeAxis(inX);
} else {
newYAxis = new API::NumericAxis(inX);
}
newYAxis->unit() = inputWorkspace->getAxis(0)->unit();
outputWorkspace->getAxis(0)->unit() = inputWorkspace->getAxis(1)->unit();
outputWorkspace->replaceAxis(1, newYAxis);
setProperty("OutputWorkspace", outputWorkspace);
return outputWorkspace;
}
/** Performs a simple check to see if the sizes of two workspaces are compatible
*for a binary operation
* In order to be size compatible then the larger workspace
* must divide be the size of the smaller workspace leaving no remainder
*
* @param lhs :: the first workspace to compare
* @param rhs :: the second workspace to compare
* @retval true The two workspaces are size compatible
* @retval false The two workspaces are NOT size compatible
*/
std::string Multiply::checkSizeCompatibility(
const API::MatrixWorkspace_const_sptr lhs,
const API::MatrixWorkspace_const_sptr rhs) const {
if (!m_keepEventWorkspace && !m_AllowDifferentNumberSpectra) {
// Fallback on the default checks
return CommutativeBinaryOperation::checkSizeCompatibility(lhs, rhs);
} else {
// A SingleValueWorkspace on the right, or matches anything
if (rhs->size() == 1)
return "";
// A SingleValueWorkspace on the left only matches if rhs was single value
// too. Why are you using mantid to do simple math?!?
if (lhs->size() == 1)
return "The left side cannot contain a single value if the right side "
"isn't also a single value.";
// RHS only has one value (1D vertical), so the number of histograms needs
// to match.
// Each lhs spectrum will be divided by that scalar
if (rhs->blocksize() == 1 &&
lhs->getNumberHistograms() == rhs->getNumberHistograms())
return "";
if (m_matchXSize) {
// Past this point, for a 2D WS operation, we require the X arrays to
// match. Note this only checks the first spectrum
if (!WorkspaceHelpers::matchingBins(*lhs, *rhs, true)) {
return "X arrays must match when multiplying 2D workspaces.";
}
}
// We don't need to check for matching bins for events. Yay events!
const size_t rhsSpec = rhs->getNumberHistograms();
// If the rhs has a single spectrum, then we can divide. The block size does
// NOT need to match,
if (rhsSpec == 1)
return "";
// Are we allowing the division by different # of spectra, using detector
// IDs to match up?
if (m_AllowDifferentNumberSpectra) {
return "";
}
// Otherwise, the number of histograms needs to match, but the block size of
// each does NOT need to match.
if (lhs->getNumberHistograms() == rhs->getNumberHistograms()) {
return "";
} else {
return "Number of histograms not identical.";
}
}
}
/** Performs a simple check to see if the sizes of two workspaces are compatible
*for a binary operation
* In order to be size compatible then the larger workspace
* must divide be the size of the smaller workspace leaving no remainder
*
* @param lhs :: the first workspace to compare
* @param rhs :: the second workspace to compare
* @retval "" The two workspaces are size compatible
* @retval "<reason why not compatible>" The two workspaces are NOT size
*compatible
*/
std::string Divide::checkSizeCompatibility(
const API::MatrixWorkspace_const_sptr lhs,
const API::MatrixWorkspace_const_sptr rhs) const {
// --- Check for event workspaces - different than workspaces 2D! ---
// A SingleValueWorkspace on the right matches anything
if (rhs->size() == 1)
return "";
// A SingleValueWorkspace on the left only matches if rhs was single value
// too. Why are you using mantid to do simple math?!?
if (lhs->size() == 1)
return "The left side cannot contain a single value if the right side "
"isn't also a single value.";
// If RHS only has one value (1D vertical), the number of histograms needs to
// match.
// Each lhs spectrum will be divided by that scalar
// std::cout << "rhs->blocksize() " << rhs->blocksize() << std::endl;
// Are we allowing the division by different # of spectra, using detector IDs
// to match up?
if (m_AllowDifferentNumberSpectra ||
(rhs->blocksize() == 1 &&
lhs->getNumberHistograms() == rhs->getNumberHistograms())) {
return "";
}
if (m_matchXSize) {
// Past this point, for a 2D WS operation, we require the X arrays to match.
// Note this only checks the first spectrum
if (!WorkspaceHelpers::matchingBins(lhs, rhs, true)) {
return "X arrays must match when dividing 2D workspaces.";
}
}
// We don't need to check for matching bins for events. Yay events!
const size_t rhsSpec = rhs->getNumberHistograms();
// If the rhs has a single spectrum, then we can divide. The block size does
// NOT need to match,
if (rhsSpec == 1)
return "";
// Otherwise, the number of histograms needs to match, but the block size of
// each does NOT need to match.
if (lhs->getNumberHistograms() == rhs->getNumberHistograms()) {
return "";
} else {
return "Number of histograms not identical.";
}
}
/** Performs a simple check to see if the sizes of two workspaces are compatible for a binary operation
* In order to be size compatible then the larger workspace
* must divide be the size of the smaller workspace leaving no remainder
* @param lhs :: the first workspace to compare
* @param rhs :: the second workspace to compare
* @retval true The two workspaces are size compatible
* @retval false The two workspaces are NOT size compatible
*/
bool BinaryOperation::checkSizeCompatibility(const API::MatrixWorkspace_const_sptr lhs,const API::MatrixWorkspace_const_sptr rhs) const
{
const size_t lhsSize = lhs->size();
const size_t rhsSize = rhs->size();
// A SingleValueWorkspace on the right matches anything
if ( rhsSize == 1 ) return true;
// The rhs must not be smaller than the lhs
if ( lhsSize < rhsSize ) return false;
//Did checkRequirements() tell us that the X histogram size did not matter?
if (!m_matchXSize)
//If so, only the vertical # needs to match
return (lhs->getNumberHistograms() == rhs->getNumberHistograms());
// Otherwise they must match both ways, or horizontally or vertically with the other rhs dimension=1
if ( rhs->blocksize() == 1 && lhs->getNumberHistograms() == rhs->getNumberHistograms() ) return true;
// Past this point, we require the X arrays to match. Note this only checks the first spectrum
if ( !WorkspaceHelpers::matchingBins(lhs,rhs,true) ) return false;
const size_t rhsSpec = rhs->getNumberHistograms();
return ( lhs->blocksize() == rhs->blocksize() && ( rhsSpec==1 || lhs->getNumberHistograms() == rhsSpec ) );
}
/** Checks if workspaces input to Q1D or Qxy are reasonable
@param dataWS data workspace
@param binWS (WavelengthAdj) workpace that will be checked to see if it has one spectrum and the same number of bins as dataWS
@param detectWS (PixelAdj) passing NULL for this wont raise an error, if set it will be checked this workspace has as many histograms as dataWS each with one bin
@throw invalid_argument if the workspaces are not mututially compatible
*/
void Qhelper::examineInput(API::MatrixWorkspace_const_sptr dataWS,
API::MatrixWorkspace_const_sptr binAdj, API::MatrixWorkspace_const_sptr detectAdj)
{
if ( dataWS->getNumberHistograms() < 1 )
{
throw std::invalid_argument("Empty data workspace passed, can not continue");
}
//it is not an error for these workspaces not to exist
if (binAdj)
{
if ( binAdj->getNumberHistograms() != 1 )
{
throw std::invalid_argument("The WavelengthAdj workspace must have one spectrum");
}
if ( binAdj->readY(0).size() != dataWS->readY(0).size() )
{
throw std::invalid_argument("The WavelengthAdj workspace's bins must match those of the detector bank workspace");
}
MantidVec::const_iterator reqX = dataWS->readX(0).begin();
MantidVec::const_iterator testX = binAdj->readX(0).begin();
for ( ; reqX != dataWS->readX(0).end(); ++reqX, ++testX)
{
if ( *reqX != *testX )
{
throw std::invalid_argument("The WavelengthAdj workspace must have matching bins with the detector bank workspace");
}
}
if ( binAdj->isDistribution() != dataWS->isDistribution() )
{
throw std::invalid_argument("The distrbution/raw counts status of the wavelengthAdj and DetBankWorkspace must be the same, use ConvertToDistribution");
}
}
else if( ! dataWS->isDistribution() )
{
//throw std::invalid_argument("The data workspace must be a distrbution if there is no Wavelength dependent adjustment");
}
if (detectAdj)
{
if ( detectAdj->blocksize() != 1 )
{
throw std::invalid_argument("The PixelAdj workspace must point to a workspace with single bin spectra, as only the first bin is used");
}
if ( detectAdj->getNumberHistograms() != dataWS->getNumberHistograms() )
{
throw std::invalid_argument("The PixelAdj workspace must have one spectrum for each spectrum in the detector bank workspace");
}
}
}
void Divide::setOutputUnits(const API::MatrixWorkspace_const_sptr lhs,const API::MatrixWorkspace_const_sptr rhs,API::MatrixWorkspace_sptr out)
{
if ( rhs->YUnit().empty() || !WorkspaceHelpers::matchingBins(lhs,rhs,true) )
{
// Do nothing
}
// If the Y units match, then the output will be a distribution and will be dimensionless
else if ( lhs->YUnit() == rhs->YUnit() && rhs->blocksize() > 1 )
{
out->setYUnit("");
out->isDistribution(true);
}
// Else we need to set the unit that results from the division
else
{
if ( ! lhs->YUnit().empty() ) out->setYUnit(lhs->YUnit() + "/" + rhs->YUnit());
else out->setYUnit("1/" + rhs->YUnit());
}
}
/** Checks if workspaces input to Q1D or Qxy are reasonable
@param dataWS data workspace
@param binAdj (WavelengthAdj) workpace that will be checked to see if it has
one spectrum and the same number of bins as dataWS
@param detectAdj (PixelAdj) passing NULL for this wont raise an error, if set
it will be checked this workspace has as many histograms as dataWS each with
one bin
@throw invalid_argument if the workspaces are not mututially compatible
*/
void Qhelper::examineInput(API::MatrixWorkspace_const_sptr dataWS,
API::MatrixWorkspace_const_sptr binAdj,
API::MatrixWorkspace_const_sptr detectAdj) {
if (dataWS->getNumberHistograms() < 1) {
throw std::invalid_argument(
"Empty data workspace passed, can not continue");
}
// it is not an error for these workspaces not to exist
if (binAdj) {
if (binAdj->getNumberHistograms() != 1) {
throw std::invalid_argument(
"The WavelengthAdj workspace must have one spectrum");
}
if (binAdj->readY(0).size() != dataWS->readY(0).size()) {
throw std::invalid_argument("The WavelengthAdj workspace's bins must "
"match those of the detector bank workspace");
}
MantidVec::const_iterator reqX = dataWS->readX(0).begin();
MantidVec::const_iterator testX = binAdj->readX(0).begin();
for (; reqX != dataWS->readX(0).end(); ++reqX, ++testX) {
if (*reqX != *testX) {
throw std::invalid_argument("The WavelengthAdj workspace must have "
"matching bins with the detector bank "
"workspace");
}
}
if (binAdj->isDistribution() != dataWS->isDistribution()) {
throw std::invalid_argument("The distrbution/raw counts status of the "
"wavelengthAdj and DetBankWorkspace must be "
"the same, use ConvertToDistribution");
}
} else if (!dataWS->isDistribution()) {
// throw std::invalid_argument("The data workspace must be a distrbution if
// there is no Wavelength dependent adjustment");
}
// Perform tests on detectAdj
if (detectAdj) {
if (detectAdj->blocksize() != 1) {
throw std::invalid_argument("The PixelAdj workspace must point to a "
"workspace with single bin spectra, as only "
"the first bin is used");
}
if (detectAdj->getNumberHistograms() != dataWS->getNumberHistograms()) {
throw std::invalid_argument("The PixelAdj workspace must have one "
"spectrum for each spectrum in the detector "
"bank workspace");
}
// test that when detector adjustment value less than or equal to zero that
// the corresponding detector
// in the workspace is masked
size_t num_histograms = dataWS->getNumberHistograms();
for (size_t i = 0; i < num_histograms; i++) {
double adj = (double)detectAdj->readY(i)[0];
if (adj <= 0.0) {
bool det_is_masked;
try {
det_is_masked = dataWS->getDetector(i)->isMasked();
} catch (...) {
// just ignore. There are times, when the detector is not masked
// because it does not exist at all.
det_is_masked = true;
}
if (!det_is_masked) {
throw std::invalid_argument(
"Every detector with non-positive PixelAdj value must be masked");
}
}
}
}
}
/**
* A map detector ID and Q ranges
* This method looks unnecessary as it could be calculated on the fly but
* the parallelization means that lazy instantation slows it down due to the
* necessary CRITICAL sections required to update the cache. The Q range
* values are required very frequently so the total time is more than
* offset by this precaching step
*/
void SofQW2::initQCache(API::MatrixWorkspace_const_sptr workspace)
{
Mantid::Kernel::Timer clock;
const size_t nhist(workspace->getNumberHistograms());
const size_t nxpoints = workspace->blocksize();
const MantidVec & X = workspace->readX(0);
m_qcached.clear();
PARALLEL_FOR1(workspace)
for(int64_t i = 0 ; i < (int64_t)nhist; ++i)
{
PARALLEL_START_INTERUPT_REGION
IDetector_const_sptr det;
try
{
det = workspace->getDetector(i);
if( det->isMonitor() ) det.reset();
}
catch(Kernel::Exception::NotFoundError&)
{
// Catch if no detector. Next line tests whether this happened - test placed
// outside here because Mac Intel compiler doesn't like 'continue' in a catch
// in an openmp block.
}
// If no detector found, skip onto the next spectrum
if ( !det ) continue;
std::vector<QValues> qvalues(nxpoints);
DetectorGroup_const_sptr detGroup = boost::dynamic_pointer_cast<const DetectorGroup>(det);
if( detGroup )
{
std::vector<IDetector_const_sptr> dets = detGroup->getDetectors();
const size_t ndets(dets.size());
for( size_t j = 0; j < ndets; ++j )
{
IDetector_const_sptr det_j = dets[j];
QRangeCache qrange(static_cast<size_t>(i), 1.0/(double)ndets);
for( size_t k = 0; k < nxpoints; ++k)
{
qvalues[k] = calculateQValues(det_j, X[k], X[k+1]);
}
qrange.qValues = qvalues;
PARALLEL_CRITICAL(qcache_a)
{
m_qcached.insert(m_qcached.end(), qrange);
}
}
}
else
{
QRangeCache qrange(static_cast<size_t>(i), 1.0);
for( size_t k = 0; k < nxpoints; ++k)
{
qvalues[k] = calculateQValues(det, X[k], X[k+1]);
}
qrange.qValues = qvalues;
PARALLEL_CRITICAL(qcache_b)
{
m_qcached.insert(m_qcached.end(), qrange);
}
}
PARALLEL_END_INTERUPT_REGION
}
/** Performs a simple check to see if the sizes of two workspaces are compatible for a binary operation
* In order to be size compatible then the larger workspace
* must divide be the size of the smaller workspace leaving no remainder
*
* @param lhs :: the first workspace to compare
* @param rhs :: the second workspace to compare
* @retval true The two workspaces are size compatible
* @retval false The two workspaces are NOT size compatible
*/
bool Multiply::checkSizeCompatibility(const API::MatrixWorkspace_const_sptr lhs,const API::MatrixWorkspace_const_sptr rhs) const
{
if (!m_keepEventWorkspace && !m_AllowDifferentNumberSpectra)
{
// Fallback on the default checks
return CommutativeBinaryOperation::checkSizeCompatibility(lhs, rhs);
}
else
{
// A SingleValueWorkspace on the right, or matches anything
if (rhs->size()==1) return true;
// A SingleValueWorkspace on the left only matches if rhs was single value too. Why are you using mantid to do simple math?!?
if (lhs->size()==1) return false;
// RHS only has one value (1D vertical), so the number of histograms needs to match.
// Each lhs spectrum will be divided by that scalar
if ( rhs->blocksize() == 1 && lhs->getNumberHistograms() == rhs->getNumberHistograms() ) return true;
if (m_matchXSize)
{
// Past this point, for a 2D WS operation, we require the X arrays to match. Note this only checks the first spectrum
if ( !WorkspaceHelpers::matchingBins(lhs,rhs,true) ) return false;
}
// We don't need to check for matching bins for events. Yay events!
const size_t rhsSpec = rhs->getNumberHistograms();
// If the rhs has a single spectrum, then we can divide. The block size does NOT need to match,
if (rhsSpec == 1) return true;
// Are we allowing the division by different # of spectra, using detector IDs to match up?
if (m_AllowDifferentNumberSpectra)
{
return true;
}
// Otherwise, the number of histograms needs to match, but the block size of each does NOT need to match.
return ( lhs->getNumberHistograms() == rhs->getNumberHistograms() );
//
//
// // --- Check for event workspaces - different than workspaces 2D! ---
//
// // A SingleValueWorkspace on the right matches anything
// WorkspaceSingleValue_const_sptr rhs_single = boost::dynamic_pointer_cast<const WorkspaceSingleValue>(rhs);
// if (rhs_single) return true;
//
// // A SingleValueWorkspace on the left only matches if rhs was single value too. Why are you using mantid to do simple math?!?
// WorkspaceSingleValue_const_sptr lhs_single = boost::dynamic_pointer_cast<const WorkspaceSingleValue>(lhs);
// if (lhs_single) return false;
//
// // RHS only has one value (1D vertical), so the number of histograms needs to match.
// // Each lhs spectrum will be divided by that scalar
// if ( rhs->blocksize() == 1 && lhs->getNumberHistograms() == rhs->getNumberHistograms() ) return true;
//
// // We don't need to check for matching bins. Yay events!
//
// const size_t rhsSpec = rhs->getNumberHistograms();
//
// // If the rhs has a single spectrum, then we can divide. The block size does NOT need to match,
// if (rhsSpec == 1) return true;
//
//
// // Are we allowing the division by different # of spectra, using detector IDs to match up?
// if (m_AllowDifferentNumberSpectra)
// {
// return true;
// }
//
// // Otherwise, the number of histograms needs to match, but the block size of each does NOT need to match.
// return ( lhs->getNumberHistograms() == rhs->getNumberHistograms() );
}
}
/** Executes the algorithm
*
*/
void MuonRemoveExpDecay::exec()
{
std::vector<int> spectra = getProperty("Spectra");
//Get original workspace
API::MatrixWorkspace_const_sptr inputWS = getProperty("InputWorkspace");
int numSpectra = static_cast<int>(inputWS->size() / inputWS->blocksize());
//Create output workspace with same dimensions as input
API::MatrixWorkspace_sptr outputWS = getProperty("OutputWorkspace");
if ( inputWS != outputWS )
{
outputWS = API::WorkspaceFactory::Instance().create(inputWS);
}
//Copy over the X vaules to avoid a race-condition in main the loop
PARALLEL_FOR2(inputWS,outputWS)
for (int i = 0; i < numSpectra; ++i)
{
PARALLEL_START_INTERUPT_REGION
outputWS->dataX(i) = inputWS->readX(i);
PARALLEL_END_INTERUPT_REGION
}
PARALLEL_CHECK_INTERUPT_REGION
if (spectra.empty())
{
Progress prog(this, 0.0, 1.0, numSpectra);
//Do all the spectra
PARALLEL_FOR2(inputWS,outputWS)
for (int i = 0; i < numSpectra; ++i)
{
PARALLEL_START_INTERUPT_REGION
// Make sure reference to input X vector is obtained after output one because in the case
// where the input & output workspaces are the same, it might move if the vectors were shared.
const MantidVec& xIn = inputWS->readX(i);
MantidVec& yOut = outputWS->dataY(i);
MantidVec& eOut = outputWS->dataE(i);
removeDecayData(xIn, inputWS->readY(i), yOut);
removeDecayError(xIn, inputWS->readE(i), eOut);
double normConst = calNormalisationConst(outputWS, i);
// do scaling and substract by minus 1.0
const size_t nbins = outputWS->dataY(i).size();
for (size_t j = 0; j < nbins; j++)
{
yOut[j] /= normConst;
yOut[j] -= 1.0;
eOut[j] /= normConst;
}
prog.report();
PARALLEL_END_INTERUPT_REGION
}
PARALLEL_CHECK_INTERUPT_REGION
}