void ChemoPopComposer::setupAgentHierarchy() {
// set children of maestro
if (this->number_of_cells > 0) {
for (int i=1;i<=this->number_of_cells; i++) {
Agent *cell = orchestra.at(i);
maestro->addChild(cell->getAgentId());
cell->setParent(maestro->getAgentId());
cell->addSpecialAgent(this->special_agents[0]->getAgentId());
}
}
maestro->addSpecialAgent(this->special_agents[0]->getAgentId());
}
Creator::Creator()
{
//composing the world hierarchy(i havent figured out the composer yet)
WorldFactory *WF = new WorldFactory();
Agent *W = WF->createAgent();
BacteriumFactory *BF = new BacteriumFactory();
Agent *B = BF->createAgent();
W->addChild(B->getAgentId());
B->setParent(W->getAgentId());
//dvorak could do better, I suppose
//initializing the position, ligand_level,ligand and phosphorylation level
srand(time(NULL));
int position = rand()%3;
int ligand_level = rand()%3;
double phosph = 0;
double ligand;
switch (ligand_level) {
case 0: ligand = 10; break;
case 1: ligand = 1000; break;
case 2: ligand = 100000; break;
}
cout << endl<<endl<<endl;
cout << "Bacterium is in box "<<position<<endl;
cout << "The ligand level is "<<ligand_level<<endl;
cout << "The ligand conc is "<<ligand<<endl;
cout << "The phosph conc is "<<phosph <<endl;
//Initializing the Databases
IntegerData *data1 = new IntegerData("Ligand Level",ligand_level);
DoubleData *data2 = new DoubleData("Phosph Conc", phosph);
W->getDatabase()->addData(data1->getName(),data1);
W->getDatabase()->addData(data2->getName(),data2);
DoubleData *data3 = new DoubleData("Ligand Conc",ligand);
DoubleData *data4 = new DoubleData("Phosph Conc", phosph);
B->getDatabase()->addData(data3->getName(),data3);
B->getDatabase()->addData(data4->getName(),data4);
}
void BlindAgentNotifyWorldThatNewAgentIsBorn::placeMessage(int destID) {
//check if I have to give birth or not
if(birthFlag->getBool())
{
birthFlag->setBool(false);
// if the death simulator determined death, then do not create the birth message
if(deathFlag->getBool()) return;
//get the agentfactory, and use it to create an agent
AgentFactory *af = Registrar::getSystemRegistrar()->getAgentFactory(1);
Agent *a = af->createAgent();
// has the same parent
// NOTE: the parent is the top level agent in the hierarchy of agents,
// not the agent that gave birth!
a->setParent(source->getParentId());
// has the same special agents
for(unsigned int s=0; s<source->getNumOfSpecialAgents(); s++)
a->addSpecialAgent(source->getSpecialAgentId(s));
// needs the same communicator, of course, of course
a->addCommunicator(source->getCommunicator());
// set the other properties of agent 'a' based on the source exactly...
a->copyDatabaseInformationFromExistingAgent(this->source);
// CLEARLY A HACK!! CHANGE THIS AT SOME POINT TO DUPLICATE SIMULATORS
// replace the movement simulator with the correct one
if (((BoolData*) a->getDatabase()->getDataItem("is_levy"))->getBool()) {
LevyRunLengthSimulator *levy = new LevyRunLengthSimulator();
a->replaceSimulator(0,levy);
} else {
ExponentialRunLengthSimulator *expo = new ExponentialRunLengthSimulator();
a->replaceSimulator(0,expo);
}
// ANOTHER HACK !! TIME TO NEXT OUTPUT IS OFF WHEN WE GET HERE, SO WE MUST UPDATE
DoubleData *t = (DoubleData *) a->getDatabase()->getDataItem("celltime");
//DoubleData *oi = (DoubleData *) a->getDatabase()->getDataItem("outputinterval");
//DoubleData *no = (DoubleData*) a->getDatabase()->getDataItem("nextOutputTime");
DoubleData *dt = (DoubleData *) a->getDatabase()->getDataItem("dt");
t->setDouble(t->getDouble()-dt->getDouble());
//register agent a
Message *specialMssg = new Message();
specialMssg->setAction(ChemoPopActionIDs::SPECIAL_AGENT_UPDATE_BLIND_AGENT_COUNT_ACTION_ID);
specialMssg->setArgument(new IntegerData("ChangeInBlindAgentNumber",1));
Registrar::getSystemRegistrar()->registerNewAgentAndSendMessageToSpecialAgent(a,specialMssg);
// Now, send the message to the world!!
Message *msg = new Message();
msg->setAction(ChemoPopActionIDs::UPDATE_WORLD_BLIND_AGENT_BIRTH_ACTION_ID);
msg->setDestinationID(destID);
//pass my agentID (the mother) and the new agent ID (the baby)
TVectorData<int> *info = new TVectorData<int>("new_cell_info","tvectordata_int");
info->addElementToEnd(this->source->getAgentId());
info->addElementToEnd(a->getAgentId()); // get new AgentID !!!
msg->setArgument(info);
source->placeMessageInOutbox(msg);
}
}
