void MindRegionDef::createFromXml( Xml xml ) {
// attributes are properties
id = xml.getAttribute( "id" );
Object::setInstance( id );
logger.logDebug( "define region id=" + id + "..." );
typeName = xml.getAttribute( "type" );
serviceName = xml.getAttribute( "service" );
size = xml.getIntAttribute( "size" , 0 );
String roleName = xml.getAttribute( "role" );
if( roleName.equals( "processor" ) )
role = MIND_REGION_ROLE_PROCESSOR;
else if( roleName.equals( "relay" ) )
role = MIND_REGION_ROLE_RELAY;
else if( roleName.equals( "sensory" ) )
role = MIND_REGION_ROLE_SENSORY;
else if( roleName.equals( "sympathetic" ) )
role = MIND_REGION_ROLE_SYMPATHETIC;
else if( roleName.equals( "parasympathetic" ) )
role = MIND_REGION_ROLE_PARASYMPATHETIC;
else if( roleName.equals( "flexor" ) )
role = MIND_REGION_ROLE_FLEXOR;
else if( roleName.equals( "extensor" ) )
role = MIND_REGION_ROLE_EXTENSOR;
else
ASSERTFAILED( "Invalid role of region id=" + id + ", role=" + roleName );
}
void MindLocalCircuitConnectionDef::createFromXml( Xml xml ) {
// attributes are properties
typeName = xml.getAttribute( "type" );
primary = xml.getBooleanAttribute( "primary" , false );
srcRegion = xml.getAttribute( "src" );
dstRegion = xml.getAttribute( "dst" );
Object::setInstance( srcRegion + "-" + dstRegion );
}
void MindRegionTypeDef::createFromXml( Xml xml ) {
if( !xml.exists() )
return;
// attributes
name = xml.getAttribute( "name" );
Object::setInstance( name );
implementation = xml.getAttribute( "implementation" );
// childs
createConnectorSetFromXml( xml );
}
void XmlSpinalCordLayout::load( Xml xmlDiv ) {
Xml layout = xmlDiv.getFirstChild( "layout" );
ASSERTMSG( layout.exists() , "layout is not found" );
imgSrc = layout.getAttribute( "imgsrc" , "" );
for( Xml xmlChild = layout.getFirstChild( "level" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "level" ) ) {
String id = xmlChild.getAttribute( "id" );
MapStringToClass<StringList>& levelData = data.getRef( id );
loadLevel( xmlChild , levelData );
}
}
void XmlBrainTractPath::load( Xml xml ) {
id = xml.getAttribute( "id" );
type = xml.getAttribute( "type" );
function = xml.getAttribute( "function" );
pathway = xml.getAttribute( "pathway" );
String src = xml.getAttribute( "src" );
String dst = xml.getAttribute( "dst" );
String mids = xml.getAttribute( "mids" , "" );
items.add( src );
StringList midlist;
mids.split( midlist , "," );
items.add( &midlist );
items.add( dst );
tract.addPath( this );
String fibersvalue = xml.getAttribute( "fibers" );
fibersvalue.split( fibers , "," );
String value = xml.getAttribute( "endings" );
value.split( endings , "," );
for( Xml xmlChild = xml.getFirstChild( "path" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "path" ) ) {
XmlBrainTractPath *path = new XmlBrainTractPath( tract , this );
path -> load( xmlChild );
childs.add( path -> id , path );
}
}
Xml AdminApiSocket::execute( Xml req ) {
ASSERTMSG( connected , "Not connected" );
// get request ID
String requestId = req.getAttribute( "requestId" , "" );
if( requestId.isEmpty() )
requestId = setXmlRequestId( req );
String request = req.serialize();
bool disconnected = false;
protocol.writeMessage( socket , request , disconnected );
if( disconnected )
connected = false;
ASSERTMSG( connected , "Connection is closed from server side while making request" );
String response;
if( !protocol.readMessage( socket , response , true , disconnected ) ) {
if( disconnected )
connected = false;
ASSERTMSG( connected , "Connection is closed from server side while reading response" );
ASSERTFAILED( "Timeout while waiting response for request=" + requestId );
return( Xml() );
}
Xml xml = Xml::read( response , "xmlcallresult" );
return( xml );
}
void MindAreaInfo::createFromXml( Xml xml )
{
// attributes are properties
areaId = xml.getAttribute( "id" );
int x , y , z;
x = xml.getIntProperty( "posX" );
y = xml.getIntProperty( "posY" );
z = xml.getIntProperty( "posZ" );
location.setPosition( x , y , z );
int dx , dy , dz;
dx = xml.getIntProperty( "sizeX" );
dy = xml.getIntProperty( "sizeY" );
dz = xml.getIntProperty( "sizeZ" );
location.setDimensions( dx , dy , dz );
size = location.getSize();
// child elements are MindLink
for( Xml xmlChild = xml.getFirstChild( "MindLink" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "MindLink" ) ) {
// construct MindArea from attributes
MindLinkInfo *info = new MindLinkInfo;
info -> createFromXml( xmlChild );
// add
links.add( info );
}
}
void TargetRegionDef::defineEffectorRegion( Xml xml ) {
MindRegionDef::id = xml.getAttribute( "id" );
MindRegionDef::target = true;
MindRegionDef::sensor = false;
Object::setInstance( MindRegionDef::id );
MindRegionDef::role = MIND_REGION_ROLE_TARGETEFFECTOR;
MindRegionDef::size = xml.getIntAttribute( "size" , 0 );
// region type for effector is the same as region itself
TargetRegionTypeDef *regionTypeInfo = new TargetRegionTypeDef();
regionTypeInfo -> defineEffectorRegionType( this , xml );
MindRegionDef::type = regionTypeInfo;
MindRegionDef::typeName = regionTypeInfo -> getName();
MindRegionDef::serviceName = xml.getAttribute( "service" );
}
void MindConnectionTypeDef::createFromXml( Xml xml ) {
// attributes
name = xml.getAttribute( "name" );
Object::setInstance( name );
srcRegionType = xml.getAttribute( "regionsrc" );
dstRegionType = xml.getAttribute( "regiondst" );
// links
for( Xml xmlChild = xml.getFirstChild( "link-type" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "link-type" ) ) {
// construct MindArea from attributes
MindConnectionLinkTypeDef *link = new MindConnectionLinkTypeDef( this );
link -> createFromXml( xmlChild );
links.add( link );
linkMap.add( link -> getName() , link );
}
}
void XmlSpinalCordLayout::loadLevel( Xml xmlLevel , MapStringToClass<StringList>& levelData ) {
for( Xml xmlChild = xmlLevel.getFirstChild( "lamina" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "lamina" ) ) {
String id = xmlChild.getAttribute( "id" );
String elements = xmlChild.getAttribute( "elements" );
StringList& items = levelData.getRef( id );
StringList parts;
elements.split( parts , "," );
for( int k = 0; k < parts.count(); k++ ) {
String element = parts.get( k );
ASSERTMSG( hmind -> getIndexedElement( element ) != NULL , "unknown element index=" + element );
if( items.find( element ) < 0 )
items.add( element );
}
}
}
void MindCircuitDef::createFromXml( Xml xml ) {
// attributes are properties
id = xml.getAttribute( "id" );
name = xml.getAttribute( "name" );
Object::setInstance( name );
enabled = xml.getBooleanAttribute( "enabled" , true );
if( !enabled )
return;
// read connections
for( Xml xmlChild = xml.getFirstChild( "connection" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "connection" ) ) {
// construct MindArea from attributes
MindCircuitConnectionDef *connection = new MindCircuitConnectionDef( this );
connection -> createFromXml( xmlChild );
connections.add( connection );
}
}
void MindAreaDef::createFromXml( Xml xml ) {
// attributes are properties
areaId = xml.getAttribute( "id" );
areaType = xml.getAttribute( "type" );
areaName = xml.getAttribute( "name" );
areaFunction = xml.getAttribute( "function" );
Object::setInstance( areaId );
enabled = xml.getBooleanAttribute( "enabled" , true );
if( !enabled )
return;
// read regions
for( Xml xmlChild = xml.getFirstChild( "region" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "region" ) ) {
// construct MindArea from attributes
MindRegionDef *region = new MindRegionDef( this );
region -> createFromXml( xmlChild );
regions.add( region );
regionMap.add( region -> getId() , region );
}
}
void AdminApiSocket::send( Xml req ) {
ASSERTMSG( connected , "Not connected" );
// get request ID
String requestId = req.getAttribute( "requestId" , "" );
if( requestId.isEmpty() )
requestId = setXmlRequestId( req );
String request = req.serialize();
bool disconnected = false;
protocol.writeMessage( socket , request , disconnected );
if( disconnected )
connected = false;
ASSERTMSG( connected , "Connection is closed from server side while making request" );
}
void MindMap::createCircuitDefSet( Xml xml ) {
if( !xml.exists() )
return;
// check using another file
EnvService *es = EnvService::getService();
String xmlFile = xml.getAttribute( "xmlfile" , "" );
if( !xmlFile.isEmpty() )
xml = es -> loadXml( xmlFile );
for( Xml xmlChild = xml.getFirstChild( "circuit" ); xmlChild.exists(); xmlChild = xmlChild.getNextChild( "circuit" ) ) {
// construct MindArea from attributes
MindCircuitDef *circuit = new MindCircuitDef;
circuit -> createFromXml( xmlChild );
mindCircuitSet.add( circuit );
mindCircuitMap.add( circuit -> getName() , circuit );
}
}
Xml Xml::findChildByPathAttr( String path , String attr , String value ) {
Xml xml = findChildByPath( path );
if( !xml.exists() )
return( xml );
String key;
int index = path.findLast( '/' );
if( index < 0 )
key = path;
else
key = path.getMid( index + 1 );
while( xml.exists() ) {
if( xml.getAttribute( attr , "" ).equals( value ) )
return( xml );
xml = xml.getNextChild( key );
}
return( xml );
}
void ScenarioPlayer::playSignal( Xml cmd ) {
// find target connector
MindService *ms = MindService::getService();
String name = cmd.getAttribute( "name" );
String component = cmd.getProperty( "component" );
String connector = cmd.getProperty( "connector" );
MindRegion *region = ms -> getMindRegion( component );
ASSERTMSG( region != NULL , "unknown region=" + component );
NeuroLinkTarget *target = region -> getNeuroLinkTarget( connector );
if( connector == NULL )
return;
NeuroSignal *signal = new NeuroSignal();
static int z = 0;
signal -> setId( String( "TM" ) + (++z) );
logger.logInfo( "send signal name=" + name + " to component=" + component + ", connector=" + connector + ", signal id=" + signal -> getId() + " ..." );
NeuroSignalSet *set = target -> execute( NULL , signal );
if( set == NULL ) {
logger.logDebug( signal -> getId() + ": there are no derived signals from signal id=" + signal -> getId() );
return;
}
// define IDs
ClassList<NeuroSignal>& signals = set -> getSignals();
for( int k = 0; k < signals.count(); k++ ) {
NeuroSignal *signalExecuted = signals.get( k );
signalExecuted -> setId( signal -> getId() + ".S" + (k+1) );
}
// follow links
MindArea *area = region -> getArea();
area -> followLinks( signal -> getId() , region , set );
set -> destroy();
}
void MindGlobalCircuitRegionDef::createFromXml( Xml xml ) {
id = xml.getAttribute( "id" );
role = xml.getAttribute( "role" );
}
